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Search of human proteins with 4758876
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
(306 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 625 e-179
gi|122937418 similar to poly(A)binding protein nuclear-like 1 [H... 179 4e-45
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 67 2e-11
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 61 1e-09
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 60 3e-09
gi|55956788 nucleolin [Homo sapiens] 59 4e-09
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 58 1e-08
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 58 1e-08
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 57 2e-08
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 57 2e-08
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 57 2e-08
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 57 3e-08
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 53 3e-07
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 53 4e-07
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 52 5e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 52 5e-07
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 52 5e-07
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 52 5e-07
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 52 5e-07
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 52 9e-07
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 51 1e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 50 2e-06
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 50 2e-06
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 50 2e-06
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 50 2e-06
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 50 2e-06
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 50 2e-06
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 50 2e-06
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 50 2e-06
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 50 2e-06
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 625 bits (1611), Expect = e-179
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEEL 60
MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEEL
Sbjct: 1 MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEEL 60
Query: 61 LLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELE 120
LLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELE
Sbjct: 61 LLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELE 120
Query: 121 AIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVD 180
AIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVD
Sbjct: 121 AIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVD 180
Query: 181 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGR 240
YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGR
Sbjct: 181 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGR 240
Query: 241 QIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARAT 300
QIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARAT
Sbjct: 241 QIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARAT 300
Query: 301 SWYSPY 306
SWYSPY
Sbjct: 301 SWYSPY 306
>gi|122937418 similar to poly(A)binding protein nuclear-like 1 [Homo
sapiens]
Length = 289
Score = 179 bits (453), Expect = 4e-45
Identities = 111/240 (46%), Positives = 144/240 (60%), Gaps = 26/240 (10%)
Query: 85 GPGPGSGAPGSQEEEEEPGLVEGDPG------------DGAIEDPELEAIKARVREME-- 130
GP G G +EEE+ +GD G + + D ELEAIK +V ME
Sbjct: 41 GPEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQA 100
Query: 131 EEAEKLKELQNEVEKQMNMSP----PPGNAG-PVIMSIEEKMEADARSIYVGNVDYGATA 185
E + +Q + E++ + P G P+ + EEK+EAD RS+YVGNVDYG +A
Sbjct: 101 EGTPRPPGVQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSA 160
Query: 186 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI 245
EELEAHF CG V+RVTILCDKFSGHPKG+AYIEF+ K SV+ ++ LD+SLFRGR IKV+
Sbjct: 161 EELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVL 220
Query: 246 PKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSP 305
PKRTN PGIS+TDRG R +R + +SG RPR R +G+ R + +P
Sbjct: 221 PKRTNFPGISSTDRGGLRGHPGSRGAPFP------HSGLQGRPRLRP-QGQNRTPAALTP 273
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 67.0 bits (162), Expect = 2e-11
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
E D RS++VGN+ Y +E HF CGS+ V I+ DK +G KGF Y+ F + +
Sbjct: 280 ETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD 339
Query: 225 SVRTSLALDESLFRGRQIKVI 245
SV +L L+ S GR+++V+
Sbjct: 340 SVHLALKLNNSELMGRKLRVM 360
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 60.8 bits (146), Expect = 1e-09
Identities = 70/321 (21%), Positives = 116/321 (36%), Gaps = 56/321 (17%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEP 64
AAAAA A G G G GA AG GA G G G E E E ++
Sbjct: 11 AAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDA 70
Query: 65 EPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIED-------- 116
E E G P + + EE + G D +D
Sbjct: 71 SKNEEDE----------GHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 117 -------PELEAIKARVR----EMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEE 165
+L+ I R R + +E+E + ++ ++ E ++N G +
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN-----GKVIDPKRAKAM 175
Query: 166 KMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKES 225
K + + I+VG + E++ +F G G V + + D + +GF +I F ++E
Sbjct: 176 KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP 235
Query: 226 VRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFN 285
V+ K++ K+ + G+S + ++ + + SR GF
Sbjct: 236 VK---------------KIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR----GGFA 276
Query: 286 SRPRGRVYRGRARATSWYSPY 306
R RG RG + +W Y
Sbjct: 277 GRARG---RGGGPSQNWNQGY 294
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 59.7 bits (143), Expect = 3e-09
Identities = 67/306 (21%), Positives = 111/306 (36%), Gaps = 53/306 (17%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEP 64
AAAAA A G G G GA AG GA G G G E E E ++
Sbjct: 11 AAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDA 70
Query: 65 EPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIED-------- 116
E E G P + + EE + G D +D
Sbjct: 71 SKNEEDE----------GHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 117 -------PELEAIKARVR----EMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEE 165
+L+ I R R + +E+E + ++ ++ E ++N G +
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN-----GKVIDPKRAKAM 175
Query: 166 KMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKES 225
K + + I+VG + E++ +F G G V + + D + +GF +I F ++E
Sbjct: 176 KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP 235
Query: 226 VRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFN 285
V+ K++ K+ + G+S + ++ + + SR GF
Sbjct: 236 VK---------------KIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR----GGFA 276
Query: 286 SRPRGR 291
R RGR
Sbjct: 277 GRARGR 282
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 59.3 bits (142), Expect = 4e-09
Identities = 69/286 (24%), Positives = 107/286 (37%), Gaps = 51/286 (17%)
Query: 2 AAAAAAAAAAGAAGGRG--SGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEE 59
A A GA G+ + PG++ +P G + G+ A D +SEE E ++
Sbjct: 101 AKAVTTPGKKGATPGKALVATPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDD 160
Query: 60 LLLEPEPEPEPEEEPPRPRAPPGAPG-------------------------------PGP 88
E E E E E EP +A AP P
Sbjct: 161 ---EDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAK 217
Query: 89 GSGAP----------GSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKE 138
G A E+EEE E D D ED + E + E EEE E +KE
Sbjct: 218 GKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEE--EEEEEEEPVKE 275
Query: 139 LQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSV 198
+ +K+M A +E A +++VGN+++ +A EL+ +
Sbjct: 276 APGKRKKEMAKQKAAPEAKK--QKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAK 333
Query: 199 NRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 244
N + ++ D G + F Y++F E + +L L G +IK+
Sbjct: 334 NDLAVV-DVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378
Score = 37.0 bits (84), Expect = 0.022
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 128 EMEEEAEKLKELQN--EVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATA 185
E E+ EK EL ++ + P G + K E DAR++ N+ Y T
Sbjct: 355 ESAEDLEKALELTGLKVFGNEIKLEKPKGK--------DSKKERDARTLLAKNLPYKVTQ 406
Query: 186 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
+EL+ F + V+ G KG AYIEF
Sbjct: 407 DELKEVFEDAAEIRLVS-----KDGKSKGIAYIEF 436
Score = 35.0 bits (79), Expect = 0.083
Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 170 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTS 229
+++++ + N+ Y AT E L+ F + + +G KG+A+IEF+ E + +
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEA 539
Query: 230 L-ALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRP 288
L + ++ GR I++ P S R P + + +++ F+
Sbjct: 540 LNSCNKREIEGRAIRL---ELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV 596
Query: 289 RGRVYRGRARATS 301
R R+ R +S
Sbjct: 597 RARIVTDRETGSS 609
Score = 33.1 bits (74), Expect = 0.32
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 171 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 230
+++++V + T E L+ F G SV R I+ D+ +G KGF +++F+ +E + +
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFDG--SV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAK 627
Query: 231 -ALDESLFRGRQI 242
A+++ G ++
Sbjct: 628 EAMEDGEIDGNKV 640
>gi|5730079 FUS interacting protein (serine-arginine rich) 1 isoform
1 [Homo sapiens]
Length = 183
Score = 57.8 bits (138), Expect = 1e-08
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
Query: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A 231
S++V NV +E+L F G + V + D ++ P+GFAY++F D +L
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 232 LDESLFRGRQIKV------------IPKRTNRPGISTT------------DRGFPRARYR 267
LD GRQI++ + + R S++ R + R R R
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSR 130
Query: 268 ARTTNYNSSRSRFYSGFNSRPRGRVYRGRARA------TSWYSPY 306
+R+ +YN RS YS NSRP GR R R+ + SW + Y
Sbjct: 131 SRSFDYNYRRS--YSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQY 173
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 57.8 bits (138), Expect = 1e-08
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
Query: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A 231
S+ V N+ Y + + L F G V V I D+++ +GFA++ F DK ++ A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 232 LDESLFRGRQIKVIPKRTNRPGISTTDR-----------GF------PRARYRARTTNYN 274
+D ++ GR+++V R RP S R G+ PR R R+R+ + +
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRS 134
Query: 275 SSRSRFYSGFN-SRPRGRVYRGRARATS 301
SRSR S ++ S+ R R R R+R+TS
Sbjct: 135 RSRSRSRSRYSRSKSRSRT-RSRSRSTS 161
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 57.0 bits (136), Expect = 2e-08
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 27/152 (17%)
Query: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A 231
S++V NV +E+L F G + V + D ++ P+GFAY++F D +L
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 232 LDESLFRGRQIKV------------IPKRTNRPGISTT------------DRGFPRARYR 267
LD GRQI++ + + R S++ R + R R R
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSR 130
Query: 268 ARTTNYNSSRSRFYSGFNSRPRGRVYRGRARA 299
+R+ +YN RS YS NSRP GR R R+ +
Sbjct: 131 SRSFDYNYRRS--YSPRNSRPTGRPRRSRSHS 160
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 57.0 bits (136), Expect = 2e-08
Identities = 53/177 (29%), Positives = 68/177 (38%), Gaps = 25/177 (14%)
Query: 3 AAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLL 62
AAAAAAAAA AA G +GPG G+ A G + G G E
Sbjct: 7 AAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGER-------- 58
Query: 63 EPEPEPEPEEEPPRPRA-PPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEA 121
P + P PP A PPG+ GP G E G+ E G +
Sbjct: 59 TPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR---RTSRRKR 115
Query: 122 IKARVREMEEEAEKL--------KELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEAD 170
K REM+E L +E + EK+ + PPP A P EE+ E++
Sbjct: 116 AKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPP-----EEENESE 167
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 57.0 bits (136), Expect = 2e-08
Identities = 53/177 (29%), Positives = 68/177 (38%), Gaps = 25/177 (14%)
Query: 3 AAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLL 62
AAAAAAAAA AA G +GPG G+ A G + G G E
Sbjct: 7 AAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGER-------- 58
Query: 63 EPEPEPEPEEEPPRPRA-PPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEA 121
P + P PP A PPG+ GP G E G+ E G +
Sbjct: 59 TPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR---RTSRRKR 115
Query: 122 IKARVREMEEEAEKL--------KELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEAD 170
K REM+E L +E + EK+ + PPP A P EE+ E++
Sbjct: 116 AKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPP-----EEENESE 167
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 56.6 bits (135), Expect = 3e-08
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 167 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESV 226
M+ RS++VGN+ Y AT E+L+ F GSV ++ D+ +G PKG+ + E+ D+E+
Sbjct: 11 MDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 227 RTSLA-LDESLFRGRQIKV 244
+++ L+ F GR ++V
Sbjct: 71 LSAMRNLNGREFSGRALRV 89
Score = 28.5 bits (62), Expect = 7.8
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 21 PGRRRHL-VPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRA 79
PG+ + + V G G G G G N +P+ L P + P + P
Sbjct: 202 PGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGG 261
Query: 80 -------PPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
P PG GPGS PG + + G PG G +
Sbjct: 262 IPAPGPIPAAVPGAGPGSLTPGGAMQPQ-----LGMPGVGPV 298
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 53.1 bits (126), Expect = 3e-07
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 167 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESV 226
++ RS++VGN+ Y AT E+L+ F G V ++ D+ +G PKG+ + E+ D+E+
Sbjct: 11 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 227 RTSLA-LDESLFRGRQIKV 244
+++ L+ F GR ++V
Sbjct: 71 LSAMRNLNGREFSGRALRV 89
Score = 35.4 bits (80), Expect = 0.064
Identities = 39/120 (32%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 49 GLESEELEPEELLLEPEPEPEPEEEPPR-----PRAPP--GAPGPGP-GSGAPGSQEEE- 99
G ES P EL P PEP P PR R PP G G P G A G +
Sbjct: 361 GHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAM 420
Query: 100 EEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV 159
E GL A+E +EA R ME A +++ + E P PG GP+
Sbjct: 421 EARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGM--EARGMDTRGPVPGPRGPI 478
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 52.8 bits (125), Expect = 4e-07
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 24/197 (12%)
Query: 55 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSG-APGSQEEEEEPGLVEGDPGDGA 113
L P L L +P P PP + P P G AP +E E DP D
Sbjct: 5 LPPNLLALFAPRDPIPYL-PPLEKLPHEKHHNQPYCGIAPYIREFE--------DPRDAP 55
Query: 114 IEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADA-R 172
P A R + EK++ Q EVE ++ M P + + DA +
Sbjct: 56 ---PPTRAETREERMERKRREKIERRQQEVETELKMWDPHN---------DPNAQGDAFK 103
Query: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA- 231
+++V V+Y T +L F G + R+ ++ K SG P+G+A+IE+ + + ++
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 232 LDESLFRGRQIKVIPKR 248
D GR++ V +R
Sbjct: 164 ADGKKIDGRRVLVDVER 180
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 52.4 bits (124), Expect = 5e-07
Identities = 43/110 (39%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
GAAG G R GA GEAG EG PG G G + + PE L P P E
Sbjct: 1378 GAAGAEG------RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ 1431
Query: 71 -------EEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVE--GDPGD 111
++ PP P PPG PG G PGS+ E+ PGL+ G PG+
Sbjct: 1432 GLPGAAGQDGPPGPMGPPGLPGL---KGDPGSKGEKGHPGLIGLIGPPGE 1478
Score = 45.8 bits (107), Expect = 5e-05
Identities = 47/134 (35%), Positives = 54/134 (40%), Gaps = 38/134 (28%)
Query: 12 GAAGGRG--SGPGRRRHL-------VPGAGGEAGE----GAPGGAGDYGNGLESEELEPE 58
GA GGRG PG + +PG G GE G PG GD G E E+ P
Sbjct: 595 GADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPR 654
Query: 59 ELLLEPEPEPEPEEEPPR----PRAPPGAPG----------PGPGSGAPGSQEEEEEPGL 104
L P E PR PR PGAPG PGP G G Q E PG
Sbjct: 655 GL---------PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP-KGNMGPQGEPGPPG- 703
Query: 105 VEGDPGDGAIEDPE 118
+G+PG + P+
Sbjct: 704 QQGNPGPQGLPGPQ 717
Score = 44.7 bits (104), Expect = 1e-04
Identities = 46/159 (28%), Positives = 59/159 (37%), Gaps = 36/159 (22%)
Query: 10 AAGAAGGRGS-GPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEP 68
A G AGG G GP ++ + G E G PG G G L+ L P
Sbjct: 1172 APGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIG--LQG---------LPGPPGE 1220
Query: 69 EPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLV--------EGDPGDGAIEDPELE 120
+ E P PPG PGP G G+ + PG V +G+PG+ P E
Sbjct: 1221 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1280
Query: 121 A-IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
A + E E+ E + PPG AGP
Sbjct: 1281 AGVGGPKGERGEKGE---------------AGPPGAAGP 1304
Score = 44.7 bits (104), Expect = 1e-04
Identities = 37/118 (31%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Query: 8 AAAAGAAGGRGSGPGRRRHLVPGAGGEAGE-GAPGGAGDYGN-GLESEELEPEELLLEPE 65
A G G +G + PG GEAG G PG G G G E + E
Sbjct: 1338 AGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGA 1397
Query: 66 PEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIK 123
P + P P+ P G PGP G PG E+ PG D G + P L +K
Sbjct: 1398 EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK 1455
Score = 43.1 bits (100), Expect = 3e-04
Identities = 35/105 (33%), Positives = 43/105 (40%), Gaps = 23/105 (21%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
G AG RG R PG G AG +G PG G+ G P+ EP P
Sbjct: 658 GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMG----------------PQGEPGP 701
Query: 71 EEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL-----VEGDPG 110
+ P P G PGP G PG + + +PGL +G PG
Sbjct: 702 PGQQGNP-GPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 745
Score = 43.1 bits (100), Expect = 3e-04
Identities = 46/162 (28%), Positives = 61/162 (37%), Gaps = 22/162 (13%)
Query: 10 AAGAAGGRGSG--PGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPE 67
+ G+ GG G PG + PG GEAG G P G E E P P +
Sbjct: 1256 SVGSVGGVGEKGEPGEAGN--PGPPGEAGVGGPKGERG-----EKGEAGPPGAAGPPGAK 1308
Query: 68 PEPEEEPPRPR----------APPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDP 117
P ++ P+ PPG PGP G G + E+ +PG G PG P
Sbjct: 1309 GPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPG-QPGPPGPSGEAGP 1367
Query: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV 159
K R AE ++ + + + PPG GPV
Sbjct: 1368 PGPPGK-RGPPGAAGAEG-RQGEKGAKGEAGAEGPPGKTGPV 1407
Score = 40.8 bits (94), Expect = 0.002
Identities = 51/162 (31%), Positives = 62/162 (38%), Gaps = 38/162 (23%)
Query: 12 GAAGGRGSGPGRRRHLVPGA-------GGEAGEGAPGGAGDYGNGLESEELEPEELLLEP 64
G AG RG PG R +PGA GGE +G PG G G + P L
Sbjct: 1033 GPAGLRGF-PGERG--LPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL---- 1085
Query: 65 EPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--VEGDPG----DGAIEDPE 118
P RP P G PGP GAPG + + G V+G G G P
Sbjct: 1086 ---------PGRP-GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPG 1135
Query: 119 LEAIKARVREMEEEAEKLKELQNEVEKQMNMSP-PPGNAGPV 159
+ K + E ++ K +K N P PPG GPV
Sbjct: 1136 EDGDKGEIGEPGQKGSK-------GDKGENGPPGPPGLQGPV 1170
Score = 40.0 bits (92), Expect = 0.003
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAP--------GGAGDYGNGLESEELEPEELLLE 63
G G RG PGR +PGA G G GG G G + ++E + + +L +
Sbjct: 478 GDPGDRGP-PGRPG--LPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQ 534
Query: 64 PEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL-----VEGDPG 110
PP P G PGP G G+ G++ E +PG V+G PG
Sbjct: 535 ARIALRG---PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPG 583
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/104 (35%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 11 AGAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYGNGLESEELEPEELLLEPEP 66
+G AG G PG+R PGA G G +GA G AG G ++ + P+ +P
Sbjct: 1362 SGEAGPPGP-PGKRGP--PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPA--GKP 1416
Query: 67 EPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
PE P P G PG G PG PGL +GDPG
Sbjct: 1417 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGL-KGDPG 1459
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/124 (29%), Positives = 43/124 (34%), Gaps = 29/124 (23%)
Query: 4 AAAAAAAAGAAGGRG-SGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLL 62
A A G G RG +GP R GA G G+ P G G+G
Sbjct: 881 ARGVAGKPGPRGQRGPTGPRGSR----GARGPTGKPGPKGTSG-GDG------------- 922
Query: 63 EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--------VEGDPGDGAI 114
P P E P P+ P G PGP G PG PG G PG G +
Sbjct: 923 --PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV 980
Query: 115 EDPE 118
P+
Sbjct: 981 VGPQ 984
Score = 38.5 bits (88), Expect = 0.008
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 8 AAAAGAAGGRG-SGPGRRRHL-----VPGAGGEAGEGAPGGAGDYGNGLESEELEPEELL 61
A GA G +G GP R + +PG G AG +PG GD G E EP +
Sbjct: 1098 AGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAG--SPGEDGDKG-----EIGEPGQKG 1150
Query: 62 LEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDP 117
+ + PP + P GAPG G G PG + ++ G +GD G P
Sbjct: 1151 SKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFG-QKGDEGARGFPGP 1205
Score = 35.8 bits (81), Expect = 0.049
Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYGN-GLESEELEPEELLLEPEP 66
G G RG + PG G G +G PG G G G + + P +
Sbjct: 925 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQ 984
Query: 67 EPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
P E P R PG PGP G PG+ +E +GDPG I
Sbjct: 985 GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG----AKGDPGPQGI 1028
Score = 35.8 bits (81), Expect = 0.049
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 29 PGAGGEAGE-------GAPGGAGDYGN-GLESEELEPEELLLEPEPEPEPEEEPPRPRAP 80
PG+ GE G G PG G+ G+ GL + P P P PP P
Sbjct: 1458 PGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL 1517
Query: 81 PGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
PG GP G+ G ++ + GL G PG
Sbjct: 1518 PGPQGPKGNKGSTGPAGQKGDSGL-PGPPG 1546
Score = 35.4 bits (80), Expect = 0.064
Identities = 38/101 (37%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
GA G RG + G+ GE GE G PG GD G L+ + E ++ P E
Sbjct: 778 GADGVRG---------LKGSKGEKGEDGFPGFKGDMG--LKGDRGEVGQI----GPRGED 822
Query: 71 EEEPPRPRA-PPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
E P+ RA P G PGP SG G + + PGL G PG
Sbjct: 823 GPEGPKGRAGPTGDPGP---SGQAGEKGKLGVPGL-PGYPG 859
Score = 32.7 bits (73), Expect = 0.41
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 36 GEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGS 95
G GA G G G E +EP +L+E P P P PPG GP G PG
Sbjct: 430 GHGAYGEKGQKG---EPAVVEPG-MLVEGPPGPAG---PAGIMGPPGLQGPTGPPGDPGD 482
Query: 96 QEEEEEPGL--VEGDPG 110
+ PGL +G PG
Sbjct: 483 RGPPGRPGLPGADGLPG 499
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/127 (26%), Positives = 44/127 (34%), Gaps = 8/127 (6%)
Query: 7 AAAAAGAAGGRGSGPGRRRHLVPGAGGEAGE----GAPGGAGDYG----NGLESEELEPE 58
A G G +G+ G PG G G G PG G G +GL +
Sbjct: 905 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG 964
Query: 59 ELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
E + + P P+ P G GP G PG E GL +GA DP
Sbjct: 965 ETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1024
Query: 119 LEAIKAR 125
+ I +
Sbjct: 1025 PQGISGK 1031
Score = 32.0 bits (71), Expect = 0.70
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
Query: 16 GRGSGPGRRRHLVP-GAGGEAGE-GAPGGAGDYGN----GLESEELEPEELLLEPEPEPE 69
G PG++ + P G G G G PG G G GL + P E + +
Sbjct: 697 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEK 756
Query: 70 PEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREM 129
PP P+ P G PGP GA G + + G D G D L+ + V ++
Sbjct: 757 GALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQI 816
Query: 130 EEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
E + E + P G+ GP
Sbjct: 817 GPRGE------DGPEGPKGRAGPTGDPGP 839
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 29 PGAGGEAGEGAP-GGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG G G P GG G G ES + P P+ P P G PG
Sbjct: 543 PGPMGLTGRPGPVGGPGSSGAKGESGD-----------PGPQGPRGVQGPPGPTGKPGKR 591
Query: 88 PGSGAPGSQEEEEEPGLVEGDPG 110
GA G + EPG +GD G
Sbjct: 592 GRPGADGGRGMPGEPG-AKGDRG 613
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 52.4 bits (124), Expect = 5e-07
Identities = 43/110 (39%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
GAAG G R GA GEAG EG PG G G + + PE L P P E
Sbjct: 1327 GAAGAEG------RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ 1380
Query: 71 -------EEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVE--GDPGD 111
++ PP P PPG PG G PGS+ E+ PGL+ G PG+
Sbjct: 1381 GLPGAAGQDGPPGPMGPPGLPGL---KGDPGSKGEKGHPGLIGLIGPPGE 1427
Score = 45.8 bits (107), Expect = 5e-05
Identities = 47/134 (35%), Positives = 54/134 (40%), Gaps = 38/134 (28%)
Query: 12 GAAGGRG--SGPGRRRHL-------VPGAGGEAGE----GAPGGAGDYGNGLESEELEPE 58
GA GGRG PG + +PG G GE G PG GD G E E+ P
Sbjct: 544 GADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPR 603
Query: 59 ELLLEPEPEPEPEEEPPR----PRAPPGAPG----------PGPGSGAPGSQEEEEEPGL 104
L P E PR PR PGAPG PGP G G Q E PG
Sbjct: 604 GL---------PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP-KGNMGPQGEPGPPG- 652
Query: 105 VEGDPGDGAIEDPE 118
+G+PG + P+
Sbjct: 653 QQGNPGPQGLPGPQ 666
Score = 44.7 bits (104), Expect = 1e-04
Identities = 46/159 (28%), Positives = 59/159 (37%), Gaps = 36/159 (22%)
Query: 10 AAGAAGGRGS-GPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEP 68
A G AGG G GP ++ + G E G PG G G L+ L P
Sbjct: 1121 APGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIG--LQG---------LPGPPGE 1169
Query: 69 EPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLV--------EGDPGDGAIEDPELE 120
+ E P PPG PGP G G+ + PG V +G+PG+ P E
Sbjct: 1170 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1229
Query: 121 A-IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
A + E E+ E + PPG AGP
Sbjct: 1230 AGVGGPKGERGEKGE---------------AGPPGAAGP 1253
Score = 44.7 bits (104), Expect = 1e-04
Identities = 37/118 (31%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Query: 8 AAAAGAAGGRGSGPGRRRHLVPGAGGEAGE-GAPGGAGDYGN-GLESEELEPEELLLEPE 65
A G G +G + PG GEAG G PG G G G E + E
Sbjct: 1287 AGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGA 1346
Query: 66 PEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIK 123
P + P P+ P G PGP G PG E+ PG D G + P L +K
Sbjct: 1347 EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK 1404
Score = 43.1 bits (100), Expect = 3e-04
Identities = 35/105 (33%), Positives = 43/105 (40%), Gaps = 23/105 (21%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
G AG RG R PG G AG +G PG G+ G P+ EP P
Sbjct: 607 GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMG----------------PQGEPGP 650
Query: 71 EEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL-----VEGDPG 110
+ P P G PGP G PG + + +PGL +G PG
Sbjct: 651 PGQQGNP-GPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 694
Score = 43.1 bits (100), Expect = 3e-04
Identities = 46/162 (28%), Positives = 61/162 (37%), Gaps = 22/162 (13%)
Query: 10 AAGAAGGRGSG--PGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPE 67
+ G+ GG G PG + PG GEAG G P G E E P P +
Sbjct: 1205 SVGSVGGVGEKGEPGEAGN--PGPPGEAGVGGPKGERG-----EKGEAGPPGAAGPPGAK 1257
Query: 68 PEPEEEPPRPR----------APPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDP 117
P ++ P+ PPG PGP G G + E+ +PG G PG P
Sbjct: 1258 GPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPG-QPGPPGPSGEAGP 1316
Query: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV 159
K R AE ++ + + + PPG GPV
Sbjct: 1317 PGPPGK-RGPPGAAGAEG-RQGEKGAKGEAGAEGPPGKTGPV 1356
Score = 40.8 bits (94), Expect = 0.002
Identities = 51/162 (31%), Positives = 62/162 (38%), Gaps = 38/162 (23%)
Query: 12 GAAGGRGSGPGRRRHLVPGA-------GGEAGEGAPGGAGDYGNGLESEELEPEELLLEP 64
G AG RG PG R +PGA GGE +G PG G G + P L
Sbjct: 982 GPAGLRGF-PGERG--LPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL---- 1034
Query: 65 EPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--VEGDPG----DGAIEDPE 118
P RP P G PGP GAPG + + G V+G G G P
Sbjct: 1035 ---------PGRP-GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPG 1084
Query: 119 LEAIKARVREMEEEAEKLKELQNEVEKQMNMSP-PPGNAGPV 159
+ K + E ++ K +K N P PPG GPV
Sbjct: 1085 EDGDKGEIGEPGQKGSK-------GDKGENGPPGPPGLQGPV 1119
Score = 40.0 bits (92), Expect = 0.003
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAP--------GGAGDYGNGLESEELEPEELLLE 63
G G RG PGR +PGA G G GG G G + ++E + + +L +
Sbjct: 427 GDPGDRGP-PGRPG--LPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQ 483
Query: 64 PEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL-----VEGDPG 110
PP P G PGP G G+ G++ E +PG V+G PG
Sbjct: 484 ARIALRG---PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPG 532
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/104 (35%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 11 AGAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYGNGLESEELEPEELLLEPEP 66
+G AG G PG+R PGA G G +GA G AG G ++ + P+ +P
Sbjct: 1311 SGEAGPPGP-PGKRGP--PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPA--GKP 1365
Query: 67 EPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
PE P P G PG G PG PGL +GDPG
Sbjct: 1366 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGL-KGDPG 1408
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/124 (29%), Positives = 43/124 (34%), Gaps = 29/124 (23%)
Query: 4 AAAAAAAAGAAGGRG-SGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLL 62
A A G G RG +GP R GA G G+ P G G+G
Sbjct: 830 ARGVAGKPGPRGQRGPTGPRGSR----GARGPTGKPGPKGTSG-GDG------------- 871
Query: 63 EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--------VEGDPGDGAI 114
P P E P P+ P G PGP G PG PG G PG G +
Sbjct: 872 --PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV 929
Query: 115 EDPE 118
P+
Sbjct: 930 VGPQ 933
Score = 38.5 bits (88), Expect = 0.008
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 8 AAAAGAAGGRG-SGPGRRRHL-----VPGAGGEAGEGAPGGAGDYGNGLESEELEPEELL 61
A GA G +G GP R + +PG G AG +PG GD G E EP +
Sbjct: 1047 AGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAG--SPGEDGDKG-----EIGEPGQKG 1099
Query: 62 LEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDP 117
+ + PP + P GAPG G G PG + ++ G +GD G P
Sbjct: 1100 SKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFG-QKGDEGARGFPGP 1154
Score = 35.8 bits (81), Expect = 0.049
Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYGN-GLESEELEPEELLLEPEP 66
G G RG + PG G G +G PG G G G + + P +
Sbjct: 874 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQ 933
Query: 67 EPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
P E P R PG PGP G PG+ +E +GDPG I
Sbjct: 934 GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG----AKGDPGPQGI 977
Score = 35.8 bits (81), Expect = 0.049
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 29 PGAGGEAGE-------GAPGGAGDYGN-GLESEELEPEELLLEPEPEPEPEEEPPRPRAP 80
PG+ GE G G PG G+ G+ GL + P P P PP P
Sbjct: 1407 PGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL 1466
Query: 81 PGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
PG GP G+ G ++ + GL G PG
Sbjct: 1467 PGPQGPKGNKGSTGPAGQKGDSGL-PGPPG 1495
Score = 35.4 bits (80), Expect = 0.064
Identities = 38/101 (37%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
GA G RG + G+ GE GE G PG GD G L+ + E ++ P E
Sbjct: 727 GADGVRG---------LKGSKGEKGEDGFPGFKGDMG--LKGDRGEVGQI----GPRGED 771
Query: 71 EEEPPRPRA-PPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
E P+ RA P G PGP SG G + + PGL G PG
Sbjct: 772 GPEGPKGRAGPTGDPGP---SGQAGEKGKLGVPGL-PGYPG 808
Score = 32.7 bits (73), Expect = 0.41
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 36 GEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGS 95
G GA G G G E +EP +L+E P P P PPG GP G PG
Sbjct: 379 GHGAYGEKGQKG---EPAVVEPG-MLVEGPPGPAG---PAGIMGPPGLQGPTGPPGDPGD 431
Query: 96 QEEEEEPGL--VEGDPG 110
+ PGL +G PG
Sbjct: 432 RGPPGRPGLPGADGLPG 448
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/127 (26%), Positives = 44/127 (34%), Gaps = 8/127 (6%)
Query: 7 AAAAAGAAGGRGSGPGRRRHLVPGAGGEAGE----GAPGGAGDYG----NGLESEELEPE 58
A G G +G+ G PG G G G PG G G +GL +
Sbjct: 854 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG 913
Query: 59 ELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
E + + P P+ P G GP G PG E GL +GA DP
Sbjct: 914 ETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 973
Query: 119 LEAIKAR 125
+ I +
Sbjct: 974 PQGISGK 980
Score = 32.0 bits (71), Expect = 0.70
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
Query: 16 GRGSGPGRRRHLVP-GAGGEAGE-GAPGGAGDYGN----GLESEELEPEELLLEPEPEPE 69
G PG++ + P G G G G PG G G GL + P E + +
Sbjct: 646 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEK 705
Query: 70 PEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREM 129
PP P+ P G PGP GA G + + G D G D L+ + V ++
Sbjct: 706 GALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQI 765
Query: 130 EEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
E + E + P G+ GP
Sbjct: 766 GPRGE------DGPEGPKGRAGPTGDPGP 788
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 29 PGAGGEAGEGAP-GGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG G G P GG G G ES + P P+ P P G PG
Sbjct: 492 PGPMGLTGRPGPVGGPGSSGAKGESGD-----------PGPQGPRGVQGPPGPTGKPGKR 540
Query: 88 PGSGAPGSQEEEEEPGLVEGDPG 110
GA G + EPG +GD G
Sbjct: 541 GRPGADGGRGMPGEPG-AKGDRG 562
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 52.4 bits (124), Expect = 5e-07
Identities = 43/110 (39%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
GAAG G R GA GEAG EG PG G G + + PE L P P E
Sbjct: 1366 GAAGAEG------RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ 1419
Query: 71 -------EEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVE--GDPGD 111
++ PP P PPG PG G PGS+ E+ PGL+ G PG+
Sbjct: 1420 GLPGAAGQDGPPGPMGPPGLPGL---KGDPGSKGEKGHPGLIGLIGPPGE 1466
Score = 45.8 bits (107), Expect = 5e-05
Identities = 47/134 (35%), Positives = 54/134 (40%), Gaps = 38/134 (28%)
Query: 12 GAAGGRG--SGPGRRRHL-------VPGAGGEAGE----GAPGGAGDYGNGLESEELEPE 58
GA GGRG PG + +PG G GE G PG GD G E E+ P
Sbjct: 583 GADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPR 642
Query: 59 ELLLEPEPEPEPEEEPPR----PRAPPGAPG----------PGPGSGAPGSQEEEEEPGL 104
L P E PR PR PGAPG PGP G G Q E PG
Sbjct: 643 GL---------PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP-KGNMGPQGEPGPPG- 691
Query: 105 VEGDPGDGAIEDPE 118
+G+PG + P+
Sbjct: 692 QQGNPGPQGLPGPQ 705
Score = 44.7 bits (104), Expect = 1e-04
Identities = 46/159 (28%), Positives = 59/159 (37%), Gaps = 36/159 (22%)
Query: 10 AAGAAGGRGS-GPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEP 68
A G AGG G GP ++ + G E G PG G G L+ L P
Sbjct: 1160 APGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIG--LQG---------LPGPPGE 1208
Query: 69 EPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLV--------EGDPGDGAIEDPELE 120
+ E P PPG PGP G G+ + PG V +G+PG+ P E
Sbjct: 1209 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1268
Query: 121 A-IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
A + E E+ E + PPG AGP
Sbjct: 1269 AGVGGPKGERGEKGE---------------AGPPGAAGP 1292
Score = 44.7 bits (104), Expect = 1e-04
Identities = 37/118 (31%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Query: 8 AAAAGAAGGRGSGPGRRRHLVPGAGGEAGE-GAPGGAGDYGN-GLESEELEPEELLLEPE 65
A G G +G + PG GEAG G PG G G G E + E
Sbjct: 1326 AGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGA 1385
Query: 66 PEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIK 123
P + P P+ P G PGP G PG E+ PG D G + P L +K
Sbjct: 1386 EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK 1443
Score = 43.1 bits (100), Expect = 3e-04
Identities = 35/105 (33%), Positives = 43/105 (40%), Gaps = 23/105 (21%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
G AG RG R PG G AG +G PG G+ G P+ EP P
Sbjct: 646 GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMG----------------PQGEPGP 689
Query: 71 EEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL-----VEGDPG 110
+ P P G PGP G PG + + +PGL +G PG
Sbjct: 690 PGQQGNP-GPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 733
Score = 43.1 bits (100), Expect = 3e-04
Identities = 46/162 (28%), Positives = 61/162 (37%), Gaps = 22/162 (13%)
Query: 10 AAGAAGGRGSG--PGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPE 67
+ G+ GG G PG + PG GEAG G P G E E P P +
Sbjct: 1244 SVGSVGGVGEKGEPGEAGN--PGPPGEAGVGGPKGERG-----EKGEAGPPGAAGPPGAK 1296
Query: 68 PEPEEEPPRPR----------APPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDP 117
P ++ P+ PPG PGP G G + E+ +PG G PG P
Sbjct: 1297 GPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPG-QPGPPGPSGEAGP 1355
Query: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV 159
K R AE ++ + + + PPG GPV
Sbjct: 1356 PGPPGK-RGPPGAAGAEG-RQGEKGAKGEAGAEGPPGKTGPV 1395
Score = 40.8 bits (94), Expect = 0.002
Identities = 51/162 (31%), Positives = 62/162 (38%), Gaps = 38/162 (23%)
Query: 12 GAAGGRGSGPGRRRHLVPGA-------GGEAGEGAPGGAGDYGNGLESEELEPEELLLEP 64
G AG RG PG R +PGA GGE +G PG G G + P L
Sbjct: 1021 GPAGLRGF-PGERG--LPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL---- 1073
Query: 65 EPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--VEGDPG----DGAIEDPE 118
P RP P G PGP GAPG + + G V+G G G P
Sbjct: 1074 ---------PGRP-GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPG 1123
Query: 119 LEAIKARVREMEEEAEKLKELQNEVEKQMNMSP-PPGNAGPV 159
+ K + E ++ K +K N P PPG GPV
Sbjct: 1124 EDGDKGEIGEPGQKGSK-------GDKGENGPPGPPGLQGPV 1158
Score = 40.0 bits (92), Expect = 0.003
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAP--------GGAGDYGNGLESEELEPEELLLE 63
G G RG PGR +PGA G G GG G G + ++E + + +L +
Sbjct: 466 GDPGDRGP-PGRPG--LPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQ 522
Query: 64 PEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL-----VEGDPG 110
PP P G PGP G G+ G++ E +PG V+G PG
Sbjct: 523 ARIALRG---PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPG 571
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/104 (35%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 11 AGAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYGNGLESEELEPEELLLEPEP 66
+G AG G PG+R PGA G G +GA G AG G ++ + P+ +P
Sbjct: 1350 SGEAGPPGP-PGKRGP--PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPA--GKP 1404
Query: 67 EPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
PE P P G PG G PG PGL +GDPG
Sbjct: 1405 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGL-KGDPG 1447
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/124 (29%), Positives = 43/124 (34%), Gaps = 29/124 (23%)
Query: 4 AAAAAAAAGAAGGRG-SGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLL 62
A A G G RG +GP R GA G G+ P G G+G
Sbjct: 869 ARGVAGKPGPRGQRGPTGPRGSR----GARGPTGKPGPKGTSG-GDG------------- 910
Query: 63 EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--------VEGDPGDGAI 114
P P E P P+ P G PGP G PG PG G PG G +
Sbjct: 911 --PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV 968
Query: 115 EDPE 118
P+
Sbjct: 969 VGPQ 972
Score = 38.5 bits (88), Expect = 0.008
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 8 AAAAGAAGGRG-SGPGRRRHL-----VPGAGGEAGEGAPGGAGDYGNGLESEELEPEELL 61
A GA G +G GP R + +PG G AG +PG GD G E EP +
Sbjct: 1086 AGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAG--SPGEDGDKG-----EIGEPGQKG 1138
Query: 62 LEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDP 117
+ + PP + P GAPG G G PG + ++ G +GD G P
Sbjct: 1139 SKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFG-QKGDEGARGFPGP 1193
Score = 35.8 bits (81), Expect = 0.049
Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYGN-GLESEELEPEELLLEPEP 66
G G RG + PG G G +G PG G G G + + P +
Sbjct: 913 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQ 972
Query: 67 EPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
P E P R PG PGP G PG+ +E +GDPG I
Sbjct: 973 GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG----AKGDPGPQGI 1016
Score = 35.8 bits (81), Expect = 0.049
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 29 PGAGGEAGE-------GAPGGAGDYGN-GLESEELEPEELLLEPEPEPEPEEEPPRPRAP 80
PG+ GE G G PG G+ G+ GL + P P P PP P
Sbjct: 1446 PGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL 1505
Query: 81 PGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
PG GP G+ G ++ + GL G PG
Sbjct: 1506 PGPQGPKGNKGSTGPAGQKGDSGL-PGPPG 1534
Score = 35.4 bits (80), Expect = 0.064
Identities = 38/101 (37%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
GA G RG + G+ GE GE G PG GD G L+ + E ++ P E
Sbjct: 766 GADGVRG---------LKGSKGEKGEDGFPGFKGDMG--LKGDRGEVGQI----GPRGED 810
Query: 71 EEEPPRPRA-PPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
E P+ RA P G PGP SG G + + PGL G PG
Sbjct: 811 GPEGPKGRAGPTGDPGP---SGQAGEKGKLGVPGL-PGYPG 847
Score = 32.7 bits (73), Expect = 0.41
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 36 GEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGS 95
G GA G G G E +EP +L+E P P P PPG GP G PG
Sbjct: 418 GHGAYGEKGQKG---EPAVVEPG-MLVEGPPGPAG---PAGIMGPPGLQGPTGPPGDPGD 470
Query: 96 QEEEEEPGL--VEGDPG 110
+ PGL +G PG
Sbjct: 471 RGPPGRPGLPGADGLPG 487
Score = 32.3 bits (72), Expect = 0.54
Identities = 34/127 (26%), Positives = 44/127 (34%), Gaps = 8/127 (6%)
Query: 7 AAAAAGAAGGRGSGPGRRRHLVPGAGGEAGE----GAPGGAGDYG----NGLESEELEPE 58
A G G +G+ G PG G G G PG G G +GL +
Sbjct: 893 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG 952
Query: 59 ELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
E + + P P+ P G GP G PG E GL +GA DP
Sbjct: 953 ETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1012
Query: 119 LEAIKAR 125
+ I +
Sbjct: 1013 PQGISGK 1019
Score = 32.0 bits (71), Expect = 0.70
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
Query: 16 GRGSGPGRRRHLVP-GAGGEAGE-GAPGGAGDYGN----GLESEELEPEELLLEPEPEPE 69
G PG++ + P G G G G PG G G GL + P E + +
Sbjct: 685 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEK 744
Query: 70 PEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREM 129
PP P+ P G PGP GA G + + G D G D L+ + V ++
Sbjct: 745 GALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQI 804
Query: 130 EEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
E + E + P G+ GP
Sbjct: 805 GPRGE------DGPEGPKGRAGPTGDPGP 827
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 29 PGAGGEAGEGAP-GGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG G G P GG G G ES + P P+ P P G PG
Sbjct: 531 PGPMGLTGRPGPVGGPGSSGAKGESGD-----------PGPQGPRGVQGPPGPTGKPGKR 579
Query: 88 PGSGAPGSQEEEEEPGLVEGDPG 110
GA G + EPG +GD G
Sbjct: 580 GRPGADGGRGMPGEPG-AKGDRG 601
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 52.4 bits (124), Expect = 5e-07
Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 8/155 (5%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYG-NGLESEELEPEELLL 62
A G GG G +PG G G EG PG G+ G G+ ++ + E
Sbjct: 336 AGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGP 395
Query: 63 EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAI 122
+P P+ + P + PPG PGP G PG + ++ PG G + DP + +
Sbjct: 396 VGQPGPQGRQGPKGEQGPPGIPGP---QGLPGVKGDKGSPGKT---GPRGKVGDPGVAGL 449
Query: 123 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAG 157
E E E + Q V + P G+AG
Sbjct: 450 PGEKGEKGESGEPGPKGQQGVRGEPGYPGPSGDAG 484
Score = 47.0 bits (110), Expect = 2e-05
Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 28 VPGAGGEAGE----GAPGGAGDYG-NGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPG 82
+PG G+ G G G GD G GL E+ E E EP P+ ++ R PG
Sbjct: 422 LPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGE---SGEPGPKGQQGV---RGEPG 475
Query: 83 APGPGPGSGAPGSQEEEEEPGL--------VEGDPGDGAIED---PELEAIKARVREMEE 131
PGP +GAPG Q PG V G PG +E + + ++ ++E
Sbjct: 476 YPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPGRQGVEGRDATDQHIVDVALKMLQE 535
Query: 132 E-AEKLKELQNEVEKQMNMSPPPGNAGP 158
+ AE + E + M PPG GP
Sbjct: 536 QLAEVAVSAKREALGAVGMMGPPGPPGP 563
Score = 35.4 bits (80), Expect = 0.064
Identities = 30/84 (35%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 30 GAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRP--RAPPGAPGP 86
GA GE G G PG G GL P P P P P R P G PGP
Sbjct: 87 GAKGEPGPMGIPGVKGQ--PGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGIRGPKGDPGP 144
Query: 87 GPGSGAPGSQEEEEEPGLVEGDPG 110
SG PG + PG ++G G
Sbjct: 145 DGPSGPPGPPGKPGRPGTIQGLEG 168
Score = 34.3 bits (77), Expect = 0.14
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 68 PEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
P E PP P PPG PG G G + PG +G+PG + P+
Sbjct: 28 PPGERGPPGPPGPPGVPGSDGIDGDNGPPGKAGPPG-PKGEPGKAGPDGPD 77
Score = 32.7 bits (73), Expect = 0.41
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 1 MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYG-NGLESEELEPE 58
M A A G G RG PG GE G EG+PG G G G + P
Sbjct: 254 MVGAIGATGPPGEEGPRGP---------PGRAGEKGDEGSPGIRGPQGITGPKGATGPPG 304
Query: 59 ELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
+ P + PG+PG +G PG + PG +G+PG
Sbjct: 305 INGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPG-DQGEPG 355
Score = 32.3 bits (72), Expect = 0.54
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 30/99 (30%)
Query: 12 GAAGGRG-SGPGRRRHLVP--GAGGEAGE----GAPGGAGDYGNGLESEELEPEELLLEP 64
G AG +G +GP + +V GA G GE G PG AG+ G
Sbjct: 238 GMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKG----------------- 280
Query: 65 EPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPG 103
+E P R P G GP +G PG ++ PG
Sbjct: 281 ------DEGSPGIRGPQGITGPKGATGPPGINGKDGTPG 313
Score = 31.6 bits (70), Expect = 0.92
Identities = 39/136 (28%), Positives = 47/136 (34%), Gaps = 39/136 (28%)
Query: 11 AGAAGGRG-SGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPE 69
AGA G +G GP R L AG G PG G G + + L + E E
Sbjct: 483 AGAPGVQGYPGPPGPRGL---AGNRGVPGQPGRQGVEGRDATDQHIVDVALKMLQEQLAE 539
Query: 70 PEEE-------------PPRPRAPPGAPG-------PGP--------------GSGAPGS 95
PP P PPG PG PGP +G G
Sbjct: 540 VAVSAKREALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGK 599
Query: 96 QEEEEEPGLV-EGDPG 110
+ E+ +PG V G PG
Sbjct: 600 RGEKGDPGEVGRGHPG 615
Score = 30.4 bits (67), Expect = 2.0
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 23/91 (25%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG G G G PG G G ++ + P + PP P+ PG GP
Sbjct: 29 PGERGPPGPPGPPGVPGSDG--------------IDGDNGPPGKAGPPGPKGEPGKAGPD 74
Query: 88 PGSGAPGSQ---EEEEEPGL-----VEGDPG 110
G PG + EPG V+G PG
Sbjct: 75 GPDGKPGIDGLTGAKGEPGPMGIPGVKGQPG 105
Score = 29.6 bits (65), Expect = 3.5
Identities = 36/116 (31%), Positives = 43/116 (37%), Gaps = 24/116 (20%)
Query: 3 AAAAAAAAAGAAGGRGSG--------PGRRR-HLVPGAGGEAG-EGAPGGAGDYG-NGLE 51
A +A A GA G G PG++ H PG G G GA G G+ G G
Sbjct: 541 AVSAKREALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKR 600
Query: 52 SEELEPEELLLEPEPEPEPEEEPPRPRAP-------------PGAPGPGPGSGAPG 94
E+ +P E+ P P P P P PGAPG G PG
Sbjct: 601 GEKGDPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGLPG 656
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 52.4 bits (124), Expect = 5e-07
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 19/152 (12%)
Query: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVR-TSLA 231
++ V N+ Y + + L F G V V I + + P+GFA++ F D+ + A
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 232 LDESLFRGRQIKVIPKRTNRPGISTTDRGFPRAR-----YRARTTNY----------NSS 276
+D + GR+++V R R + + +G PR R Y R+ +Y + S
Sbjct: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS 134
Query: 277 RSRFYSGFNSRPRGRVYRGRARATSWY--SPY 306
RSR S SR R R YRG + S Y SPY
Sbjct: 135 RSRGPSCSRSRSRSR-YRGSRYSRSPYSRSPY 165
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 51.6 bits (122), Expect = 9e-07
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 34/165 (20%)
Query: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A 231
S++V NV +E+L F G + V + D ++ P+GFAY++F D +L
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 232 LDESLFRGRQIKV------------IPKRTNRPGISTT------------DRGFPRARYR 267
LD GRQI++ + + R S++ R + R R R
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSR 130
Query: 268 ARTTNYNSSRSRFYSGFNSRPRGRVYRGRARA------TSWYSPY 306
+R+ +YN RS YS N RP GR R R+ + SW + Y
Sbjct: 131 SRSFDYNYRRS--YSPRN-RPTGRPRRSRSHSDNDRPNCSWNTQY 172
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 51.2 bits (121), Expect = 1e-06
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 167 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESV 226
M ++ ++VG +++ + LE HF G ++ V ++ D+ + +GF +I F++ E
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 227 RTSL-ALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSG-- 283
++ A++ GRQI+V + T GF A R R+ + + SG
Sbjct: 61 SVAMRAMNGESLDGRQIRV--DHAGKSARGTRGGGF-GAHGRGRSYSRGGGDQGYGSGRY 117
Query: 284 FNSRPRGRVY-RGRAR 298
++SRP G Y GR+R
Sbjct: 118 YDSRPGGYGYGYGRSR 133
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 50.4 bits (119), Expect = 2e-06
Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 14/169 (8%)
Query: 2 AAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGA-GDYGNGLESEELEPEEL 60
+ A A G GG G+ PG GE G GG G G E E P
Sbjct: 1260 SGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGA 1319
Query: 61 LLEPEPEPEPEEEPPRPR----------APPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
P P+ P ++ P+ PPG PGP G PG + ++ EPG G PG
Sbjct: 1320 AGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQT-GSPG 1378
Query: 111 DGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV 159
+P + + ++ + + + + PPG GP+
Sbjct: 1379 PTG--EPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPI 1425
Score = 47.4 bits (111), Expect = 2e-05
Identities = 44/128 (34%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 11 AGAAGGRG----SGPGRRRHL-----VPGAGGEAGE----GAPGGAGDYGNGLESEELEP 57
AG+ G RG +GP R +PG G G+ G PG GD G + E+ P
Sbjct: 612 AGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGP 671
Query: 58 EELLLEPEPEPEPEEEPPRPRAPPGAPG-------PGPGSGAPGSQEEEEEPGLVEGDPG 110
L EP P P P PPG PG PGP G G Q E PG +G+PG
Sbjct: 672 RGL--PGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGP-KGNVGPQGEPGPPG-QQGNPG 727
Query: 111 DGAIEDPE 118
+ P+
Sbjct: 728 AQGLPGPQ 735
Score = 45.4 bits (106), Expect = 6e-05
Identities = 43/128 (33%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 11 AGAAGGRG----SGPGRRRHLVPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPE 65
+G G RG +GP R+ GA GEAG EG PG G G + P+ L P
Sbjct: 1386 SGPPGKRGPPGPAGPEGRQG-EKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPG 1444
Query: 66 PEPEP-------EEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLV--------EGDPG 110
P E + PP P PPG PG SG G E+ PGL+ +G+ G
Sbjct: 1445 PVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKG---EKGHPGLIGLIGPPGEQGEKG 1501
Query: 111 DGAIEDPE 118
D + P+
Sbjct: 1502 DRGLPGPQ 1509
Score = 42.4 bits (98), Expect = 5e-04
Identities = 43/156 (27%), Positives = 58/156 (37%), Gaps = 22/156 (14%)
Query: 12 GAAGGRGS-GPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
G +G G GP ++ L G E G PG G G L+ L P +
Sbjct: 1192 GPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVG--LQG---------LPGPPGEKG 1240
Query: 71 EEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLV--------EGDPGDGAIEDPELEAI 122
E PPG PGP SGAPG+ + PG + +G+PG+ +P L
Sbjct: 1241 ETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAG--EPGLPGE 1298
Query: 123 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
E EK + + PPG+ GP
Sbjct: 1299 GGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGP 1334
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/121 (31%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 8 AAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYG----NGLESEELEPEELLL 62
A G G +G + PG GE G G PG G G G + E+ E L
Sbjct: 1356 AGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGL 1415
Query: 63 EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAI 122
E P + P P+ PG PGP G PG E+ PG D G + P L +
Sbjct: 1416 EGPPG---KTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGL 1472
Query: 123 K 123
K
Sbjct: 1473 K 1473
Score = 39.7 bits (91), Expect = 0.003
Identities = 47/159 (29%), Positives = 60/159 (37%), Gaps = 23/159 (14%)
Query: 8 AAAAGAAGGRG-SGPGRRRHLVPGAG--GEAGE-GAPGGAGDYGNGLESEELEPEELLLE 63
A GA G +G GP R L G G AG G PG GD G E EP + +
Sbjct: 1116 AGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKG-----EIGEPGQKGSK 1170
Query: 64 PEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE----L 119
+ + P P+ P G PGP G PG + ++ G +GD G P L
Sbjct: 1171 GDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFG-QKGDEGPRGFPGPPGPVGL 1229
Query: 120 EAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
+ + E E + QM PPG GP
Sbjct: 1230 QGLPGPPGEKGETGD---------VGQMGPPGPPGPRGP 1259
Score = 39.3 bits (90), Expect = 0.004
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 29 PGAGGEAG----EGAPGGAGDYGNGLESEELEPEELLLEPEPE----------PEPEEEP 74
PGA GE G G PG G G E P + +P P+ P E P
Sbjct: 891 PGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGP 950
Query: 75 PRPRAPPGAPGPGPGSGAPGSQEEEEEPG 103
P+ P G PGP G PG PG
Sbjct: 951 NGPQGPTGFPGPKGPPGPPGKDGLPGHPG 979
Score = 38.9 bits (89), Expect = 0.006
Identities = 39/116 (33%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 10 AAGAAGGRGSG--PGRRRHLVP-GAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPE 65
A G GGRG+ PG R P G GE G G G G GN P E
Sbjct: 893 ANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPG-----E 947
Query: 66 PEPEPEEEP---PRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
P + P P P+ PPG PG G PG + E G G PG + P+
Sbjct: 948 RGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT-GPPGPPGVVGPQ 1002
Score = 38.1 bits (87), Expect = 0.010
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 9/109 (8%)
Query: 11 AGAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYGN-GLESEELEPEELLLEPE 65
AG G RG + PG G G +G PG G G G + + P +
Sbjct: 942 AGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGP 1001
Query: 66 PEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
P E P R PG PGP G PG +E +GDPG +
Sbjct: 1002 QGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEG----TKGDPGPAGL 1046
Score = 37.4 bits (85), Expect = 0.017
Identities = 37/103 (35%), Positives = 44/103 (42%), Gaps = 25/103 (24%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
GA G RG + G GE GE G PG GD G + E+ P P P
Sbjct: 796 GADGIRG---------LKGTKGEKGEDGFPGFKGDMGIKGDRGEIGP--------PGPRG 838
Query: 71 EEEPPRPR---APPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG 110
E+ P P+ P G PGP G PG + + PGL G PG
Sbjct: 839 EDGPEGPKGRGGPNGDPGP---LGPPGEKGKLGVPGL-PGYPG 877
Score = 36.6 bits (83), Expect = 0.029
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 25/100 (25%)
Query: 20 GPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRA 79
GPG +P EG G G+ G E +EP L+ E PP P
Sbjct: 431 GPG-----MPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLI----------EGPPGPEG 475
Query: 80 PPGAPGPGPGS-------GAPGSQEEEEEPGL--VEGDPG 110
P G PGP PG+ G PG + PGL +G PG
Sbjct: 476 PAGLPGP-PGTMGPTGQVGDPGERGPPGRPGLPGADGLPG 514
Score = 34.7 bits (78), Expect = 0.11
Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 18/102 (17%)
Query: 29 PGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAP---PGAP 84
PG G G +G PG G GN P L P P+ PP + P PG P
Sbjct: 705 PGPKGNVGPQGEPGPPGQQGN--------PGAQGL---PGPQGAIGPPGEKGPLGKPGLP 753
Query: 85 GPGPGSGAPGSQEEEEEPGLV--EGDPG-DGAIEDPELEAIK 123
G G PG +E PG +G PG G I P +K
Sbjct: 754 GMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVK 795
Score = 34.7 bits (78), Expect = 0.11
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 16 GRGSGPGRRRHLVPGAGGEAGE----GAPGGAGDYGN----GLESEELEPEELLLEPEPE 67
G PG++ + PGA G G G PG G G G+ + P E P
Sbjct: 715 GEPGPPGQQGN--PGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPG 772
Query: 68 PEPEEEPPRPRAPPGAPGPGPGSGAPG 94
+ + PP P+ P G PGP GA G
Sbjct: 773 EKGGQGPPGPQGPIGYPGPRGVKGADG 799
Score = 34.3 bits (77), Expect = 0.14
Identities = 47/170 (27%), Positives = 59/170 (34%), Gaps = 39/170 (22%)
Query: 11 AGAAGGRGS-GPGRRRHLVPGAGGEAG-EGAPGGAGDYGN----GLESEELEPEELLLEP 64
AG G +G GP +PG G G G PG G G GL+ E P P
Sbjct: 1032 AGKEGTKGDPGPAG----LPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGP----P 1083
Query: 65 EPEPEPEEEPPRPRA----------PPGAPGPGPGSGAPGSQEEEEEPGL--VEGDPG-- 110
P P E P A P G PGP GAPG + + G ++G G
Sbjct: 1084 GPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLP 1143
Query: 111 --DGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
G + P + K + E ++ K PPG GP
Sbjct: 1144 GPAGPVGPPGEDGDKGEIGEPGQKGSK---------GDKGEQGPPGPTGP 1184
Score = 33.5 bits (75), Expect = 0.24
Identities = 34/108 (31%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 28 VPGAGGEAG----EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEE--------PP 75
+PG G++G +G PG G G E E + + L P+ P+ E P
Sbjct: 1469 LPGLKGDSGPKGEKGHPGLIGLIGPPGEQGE-KGDRGLPGPQGSSGPKGEQGITGPSGPI 1527
Query: 76 RPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIK 123
P PPG PGP GA GS G G PG P E I+
Sbjct: 1528 GPPGPPGLPGPPGPKGAKGSSGPTGPKG-EAGHPGPPGPPGPPGEVIQ 1574
Score = 33.1 bits (74), Expect = 0.32
Identities = 40/121 (33%), Positives = 49/121 (40%), Gaps = 25/121 (20%)
Query: 12 GAAGGRG----SGP-GRRRHLVPGAGGEAGE-GAPGGAGDYGN-------GLESEELEPE 58
G G +G +GP G R H PG G GE G PG AG G GL ++ P
Sbjct: 997 GVVGPQGPTGETGPMGERGH--PGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPG 1054
Query: 59 ELLLEPE---PEP------EPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDP 109
+ P P + E PP P P G+PG +GA G PG +G P
Sbjct: 1055 LRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPG-PQGPP 1113
Query: 110 G 110
G
Sbjct: 1114 G 1114
Score = 32.3 bits (72), Expect = 0.54
Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 10 AAGAAGGRGS-GPGRRRHLVPGAGGEAGE-GAPGGAGDYGN-GLESEELEPEELLLEPEP 66
A G G +G+ GP PG G G+ G PG G G G +E P E + P
Sbjct: 728 AQGLPGPQGAIGP-------PGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPP 780
Query: 67 EPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL-----VEGDPGD 111
P+ P PR GA G G G + E+ PG ++GD G+
Sbjct: 781 GPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGE 830
Score = 31.6 bits (70), Expect = 0.92
Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGE-----------GAPGGAGDYGNGLESEELEPEEL 60
G G RG PGR +PGA G G G G AG G + ++E + + +
Sbjct: 493 GDPGERGP-PGRPG--LPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAI 549
Query: 61 LLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDP 117
L + P P G PGP G PGS + EPG V G G ++ P
Sbjct: 550 LQQARLALRG---PAGPMGLTGRPGP---VGPPGSGGLKGEPGDV-GPQGPRGVQGP 599
Score = 30.8 bits (68), Expect = 1.6
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
G G +G+ + PG G G +G PG G G E L L P + P
Sbjct: 703 GQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPP 762
Query: 71 ----EEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--VEGDPGD 111
+E PP + G PGP G PG + + G+ ++G G+
Sbjct: 763 GHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGE 809
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 50.4 bits (119), Expect = 2e-06
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 37/156 (23%)
Query: 174 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 232
+YVGN+ GA ELE F G + V I + +P GFA++EF D ++ L
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDAVRGL 67
Query: 233 DESLFRGRQIKV-----IPKRTN------RPGISTTDRGFP----------------RAR 265
D + G +++V +P+R+ R DR + R R
Sbjct: 68 DGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRR 127
Query: 266 YRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATS 301
R+R+ +++ SR R YS SR RGR R+R+ S
Sbjct: 128 SRSRSRSHSRSRGRRYSRSRSRSRGR----RSRSAS 159
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/166 (30%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPG---------GAGDYGNGLESEE 54
A A AG +G PG +PG GE G EG+PG GD GN +
Sbjct: 331 AKGAPGIAVAGMKGE-PG-----IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 384
Query: 55 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
EP L P P+ E PPG PG GA G Q + G +G+PG G
Sbjct: 385 GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKG-SKGEPGKG-- 441
Query: 115 EDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPP--PGNAGP 158
EM + + E E+ M PP PG GP
Sbjct: 442 -------------EMVDYNGNINEALQEIRTLALMGPPGLPGQIGP 474
Score = 38.5 bits (88), Expect = 0.008
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 28 VPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGP 86
+PG GE G G PG G+ G + ++ P P P+ PP PPG G
Sbjct: 480 IPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP----------PGPQG-PPGKDGPPGVKGE 528
Query: 87 GPGSGAPGSQEEEEEPGLVEGDPGD 111
G+PG + E+ E G G PG+
Sbjct: 529 NGHPGSPGEKGEKGETGQA-GSPGE 552
Score = 37.4 bits (85), Expect = 0.017
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYG-------NGLESE 53
A + G AG +G+ PG +PG G G +G PG G+ G G + E
Sbjct: 547 AGSPGEKGEAGEKGN-PGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGE 605
Query: 54 ELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--------- 104
+ + L L + PP P G PGP +G G + + +PG+
Sbjct: 606 KGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGP---AGPKGERGSKGDPGMTGPTGAAGL 662
Query: 105 --VEGDPGD 111
+ G PGD
Sbjct: 663 PGLHGPPGD 671
Score = 35.8 bits (81), Expect = 0.049
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG+ GE GE G G AG G E+ E + P PE PP P G PGP
Sbjct: 532 PGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG---PPGPPGLQGVPGPK 588
Query: 88 PGSGAPGSQEEEEEPGLVEGDPG 110
+G G++ E+ G +GD G
Sbjct: 589 GEAGLDGAKGEKGFQG-EKGDRG 610
Score = 34.7 bits (78), Expect = 0.11
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 54 ELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGA 113
+L E+ L E + P PPG PGP G PG + PG V G PGD
Sbjct: 94 QLLDEKWKLHSRRRREAPKTSPGCNCPPGPPGPTGRPGLPGDKGAIGMPGRV-GSPGDAG 152
Query: 114 I 114
+
Sbjct: 153 L 153
Score = 34.3 bits (77), Expect = 0.14
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPE 71
GAAG +G G G GE G DY + E L L P +
Sbjct: 421 GAAGEQGPD---------GPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQ 471
Query: 72 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
PP PG PG G PG + E G G PGD P+
Sbjct: 472 IGPP---GAPGIPGQKGEIGLPGPPGHDGEKG-PRGKPGDMGPPGPQ 514
Score = 32.0 bits (71), Expect = 0.70
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 32/140 (22%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG G+ G G PG G G+ S ++ P P P R PG PGP
Sbjct: 130 PGLPGDKGAIGMPGRVGSPGDAGLS--------IIGPRGPPGQ----PGTRGFPGFPGPI 177
Query: 88 PGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE--------------LEAIKARVREMEEEA 133
G PG + + GL G PG + + L ++ A +R + A
Sbjct: 178 GLDGKPGHPGPKGDMGLT-GPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIA 236
Query: 134 EKLKELQNEVEKQMNMSPPP 153
KL L N V ++PPP
Sbjct: 237 LKLLPLLNSV----RLAPPP 252
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 56 EPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL 104
E + ++ P P P P PG PGP G PG + +PG+
Sbjct: 262 EQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGI 310
Score = 30.4 bits (67), Expect = 2.0
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 38 GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPR----PRAPPGAPGPGPGSGAP 93
G PG +G G+ + P L P P+ +P + R PG PG GAP
Sbjct: 276 GPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAP 335
Query: 94 GSQEE--EEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP 151
G + EPG+ GA P L + + ++ EK + N +
Sbjct: 336 GIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL------LGQKGEK-GDAGNSIGGGRGEPG 388
Query: 152 PPGNAGP 158
PPG GP
Sbjct: 389 PPGLPGP 395
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/166 (30%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPG---------GAGDYGNGLESEE 54
A A AG +G PG +PG GE G EG+PG GD GN +
Sbjct: 280 AKGAPGIAVAGMKGE-PG-----IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 333
Query: 55 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
EP L P P+ E PPG PG GA G Q + G +G+PG G
Sbjct: 334 GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKG-SKGEPGKG-- 390
Query: 115 EDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPP--PGNAGP 158
EM + + E E+ M PP PG GP
Sbjct: 391 -------------EMVDYNGNINEALQEIRTLALMGPPGLPGQIGP 423
Score = 38.1 bits (87), Expect = 0.010
Identities = 43/146 (29%), Positives = 59/146 (40%), Gaps = 26/146 (17%)
Query: 28 VPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGP 86
+PG GE G G PG G+ G + ++ P P P+ PP PPG G
Sbjct: 429 IPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP----------PGPQG-PPGKDGPPGVKGE 477
Query: 87 GPGSGAPGSQEEEEEPGL----VEGDPG-DGAIEDPELEAIKARVREME-EEAEKLKELQ 140
G+PG + E+ E G V G PG +G P L+ + E + A+ K Q
Sbjct: 478 NGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQ 537
Query: 141 NEVEKQMNMSPP--------PGNAGP 158
E + + P PG AGP
Sbjct: 538 GEKGDRGPLGLPGTPGPIGVPGPAGP 563
Score = 34.3 bits (77), Expect = 0.14
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 29 PGAGGEAGEGAPGGAGDYGN---------GLESEEL-----EPEELLLEPEPEPEPEEEP 74
PG G+ GE G G+Y + L S ++ E + ++ P P P
Sbjct: 172 PGPQGQKGE--KGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGP 229
Query: 75 PRPRAPPGAPGPGPGSGAPGSQEEEEEPGL 104
P PG PGP G PG + +PG+
Sbjct: 230 SGPLGHPGLPGPMGPPGLPGPPGPKGDPGI 259
Score = 34.3 bits (77), Expect = 0.14
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPE 71
GAAG +G G G GE G DY + E L L P +
Sbjct: 370 GAAGEQGPD---------GPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQ 420
Query: 72 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
PP PG PG G PG + E G G PGD P+
Sbjct: 421 IGPP---GAPGIPGQKGEIGLPGPPGHDGEKG-PRGKPGDMGPPGPQ 463
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 75 PRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE--------------LE 120
P R PG PGP G PG + + GL G PG + + L
Sbjct: 136 PGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-GPPGQPGPQGQKGEKGQCGEYPHRECLS 194
Query: 121 AIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV 159
++ A +R + A K ++ Q ++ PPG +GP+
Sbjct: 195 SMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPL 233
Score = 30.4 bits (67), Expect = 2.0
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 38 GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPR----PRAPPGAPGPGPGSGAP 93
G PG +G G+ + P L P P+ +P + R PG PG GAP
Sbjct: 225 GPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAP 284
Query: 94 GSQEE--EEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP 151
G + EPG+ GA P L + + ++ EK + N +
Sbjct: 285 GIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL------LGQKGEK-GDAGNSIGGGRGEPG 337
Query: 152 PPGNAGP 158
PPG GP
Sbjct: 338 PPGLPGP 344
Score = 28.9 bits (63), Expect = 6.0
Identities = 32/116 (27%), Positives = 41/116 (35%), Gaps = 36/116 (31%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEP------------- 74
PG+ GE GE G G AG GL E P L+ P P+ E
Sbjct: 481 PGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEK 540
Query: 75 --------PRPRAPPGAPGPGPGSGAPGSQEEEEEPGL-----------VEGDPGD 111
P P G PGP +G G + + +PG+ + G PGD
Sbjct: 541 GDRGPLGLPGTPGPIGVPGP---AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGD 593
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/166 (30%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPG---------GAGDYGNGLESEE 54
A A AG +G PG +PG GE G EG+PG GD GN +
Sbjct: 269 AKGAPGIAVAGMKGE-PG-----IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 322
Query: 55 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
EP L P P+ E PPG PG GA G Q + G +G+PG G
Sbjct: 323 GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKG-SKGEPGKG-- 379
Query: 115 EDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPP--PGNAGP 158
EM + + E E+ M PP PG GP
Sbjct: 380 -------------EMVDYNGNINEALQEIRTLALMGPPGLPGQIGP 412
Score = 38.5 bits (88), Expect = 0.008
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 28 VPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGP 86
+PG GE G G PG G+ G + ++ P P P+ PP PPG G
Sbjct: 418 IPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP----------PGPQG-PPGKDGPPGVKGE 466
Query: 87 GPGSGAPGSQEEEEEPGLVEGDPGD 111
G+PG + E+ E G G PG+
Sbjct: 467 NGHPGSPGEKGEKGETGQA-GSPGE 490
Score = 37.4 bits (85), Expect = 0.017
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYG-------NGLESE 53
A + G AG +G+ PG +PG G G +G PG G+ G G + E
Sbjct: 485 AGSPGEKGEAGEKGN-PGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGE 543
Query: 54 ELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--------- 104
+ + L L + PP P G PGP +G G + + +PG+
Sbjct: 544 KGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGP---AGPKGERGSKGDPGMTGPTGAAGL 600
Query: 105 --VEGDPGD 111
+ G PGD
Sbjct: 601 PGLHGPPGD 609
Score = 37.0 bits (84), Expect = 0.022
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 29 PGAGGEAG-EGAPGGAGDYGNGLESEEL-------EPEELLLEPEPEPEPEEEPPRPRAP 80
PG G+ G G PG G G E + E + ++ P P P P
Sbjct: 165 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGH 224
Query: 81 PGAPGPGPGSGAPGSQEEEEEPGL 104
PG PGP G PG + +PG+
Sbjct: 225 PGLPGPMGPPGLPGPPGPKGDPGI 248
Score = 35.8 bits (81), Expect = 0.049
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG+ GE GE G G AG G E+ E + P PE PP P G PGP
Sbjct: 470 PGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG---PPGPPGLQGVPGPK 526
Query: 88 PGSGAPGSQEEEEEPGLVEGDPG 110
+G G++ E+ G +GD G
Sbjct: 527 GEAGLDGAKGEKGFQG-EKGDRG 548
Score = 34.3 bits (77), Expect = 0.14
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPE 71
GAAG +G G G GE G DY + E L L P +
Sbjct: 359 GAAGEQGPD---------GPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQ 409
Query: 72 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
PP PG PG G PG + E G G PGD P+
Sbjct: 410 IGPP---GAPGIPGQKGEIGLPGPPGHDGEKG-PRGKPGDMGPPGPQ 452
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 77 PRAPPGAPGPGPGSGAPGSQEEEEEPGL--VEGDPG-DGAIEDPELEAIKARVREMEEEA 133
PR PPG PG G PG + +PG +GD G G P + K + E
Sbjct: 137 PRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYP 196
Query: 134 EKLKELQNEVEKQMNMSPPPGNAGPV 159
+ ++ Q ++ PPG +GP+
Sbjct: 197 HRGEQSQASIQGPPGPPGPPGPSGPL 222
Score = 32.3 bits (72), Expect = 0.54
Identities = 41/154 (26%), Positives = 55/154 (35%), Gaps = 14/154 (9%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
G G G P R G G G PG +G G+ + P L P P+ +P
Sbjct: 187 GEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDP 246
Query: 71 EEEPPR----PRAPPGAPGPGPGSGAPGSQEE--EEEPGLVEGDPGDGAIEDPELEAIKA 124
+ R PG PG GAPG + EPG+ GA P L +
Sbjct: 247 GIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL-- 304
Query: 125 RVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
+ ++ EK + N + PPG GP
Sbjct: 305 ----LGQKGEK-GDAGNSIGGGRGEPGPPGLPGP 333
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/166 (30%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPG---------GAGDYGNGLESEE 54
A A AG +G PG +PG GE G EG+PG GD GN +
Sbjct: 271 AKGAPGIAVAGMKGE-PG-----IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 324
Query: 55 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
EP L P P+ E PPG PG GA G Q + G +G+PG G
Sbjct: 325 GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKG-SKGEPGKG-- 381
Query: 115 EDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPP--PGNAGP 158
EM + + E E+ M PP PG GP
Sbjct: 382 -------------EMVDYNGNINEALQEIRTLALMGPPGLPGQIGP 414
Score = 38.5 bits (88), Expect = 0.008
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 28 VPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGP 86
+PG GE G G PG G+ G + ++ P P P+ PP PPG G
Sbjct: 420 IPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP----------PGPQG-PPGKDGPPGVKGE 468
Query: 87 GPGSGAPGSQEEEEEPGLVEGDPGD 111
G+PG + E+ E G G PG+
Sbjct: 469 NGHPGSPGEKGEKGETGQA-GSPGE 492
Score = 37.4 bits (85), Expect = 0.017
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYG-------NGLESE 53
A + G AG +G+ PG +PG G G +G PG G+ G G + E
Sbjct: 487 AGSPGEKGEAGEKGN-PGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGE 545
Query: 54 ELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--------- 104
+ + L L + PP P G PGP +G G + + +PG+
Sbjct: 546 KGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGP---AGPKGERGSKGDPGMTGPTGAAGL 602
Query: 105 --VEGDPGD 111
+ G PGD
Sbjct: 603 PGLHGPPGD 611
Score = 35.8 bits (81), Expect = 0.049
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG+ GE GE G G AG G E+ E + P PE PP P G PGP
Sbjct: 472 PGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG---PPGPPGLQGVPGPK 528
Query: 88 PGSGAPGSQEEEEEPGLVEGDPG 110
+G G++ E+ G +GD G
Sbjct: 529 GEAGLDGAKGEKGFQG-EKGDRG 550
Score = 34.3 bits (77), Expect = 0.14
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 29 PGAGGEAGEGAPGGAGDYGN---------GLESEEL-----EPEELLLEPEPEPEPEEEP 74
PG G+ GE G G+Y + L S ++ E + ++ P P P
Sbjct: 163 PGPQGQKGE--KGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGP 220
Query: 75 PRPRAPPGAPGPGPGSGAPGSQEEEEEPGL 104
P PG PGP G PG + +PG+
Sbjct: 221 SGPLGHPGLPGPMGPPGLPGPPGPKGDPGI 250
Score = 34.3 bits (77), Expect = 0.14
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPE 71
GAAG +G G G GE G DY + E L L P +
Sbjct: 361 GAAGEQGPD---------GPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQ 411
Query: 72 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
PP PG PG G PG + E G G PGD P+
Sbjct: 412 IGPP---GAPGIPGQKGEIGLPGPPGHDGEKG-PRGKPGDMGPPGPQ 454
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 75 PRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE--------------LE 120
P R PG PGP G PG + + GL G PG + + L
Sbjct: 127 PGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-GPPGQPGPQGQKGEKGQCGEYPHRECLS 185
Query: 121 AIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV 159
++ A +R + A K ++ Q ++ PPG +GP+
Sbjct: 186 SMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPL 224
Score = 30.4 bits (67), Expect = 2.0
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 38 GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPR----PRAPPGAPGPGPGSGAP 93
G PG +G G+ + P L P P+ +P + R PG PG GAP
Sbjct: 216 GPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAP 275
Query: 94 GSQEE--EEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP 151
G + EPG+ GA P L + + ++ EK + N +
Sbjct: 276 GIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL------LGQKGEK-GDAGNSIGGGRGEPG 328
Query: 152 PPGNAGP 158
PPG GP
Sbjct: 329 PPGLPGP 335
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/166 (30%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPG---------GAGDYGNGLESEE 54
A A AG +G PG +PG GE G EG+PG GD GN +
Sbjct: 274 AKGAPGIAVAGMKGE-PG-----IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 327
Query: 55 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
EP L P P+ E PPG PG GA G Q + G +G+PG G
Sbjct: 328 GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKG-SKGEPGKG-- 384
Query: 115 EDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPP--PGNAGP 158
EM + + E E+ M PP PG GP
Sbjct: 385 -------------EMVDYNGNINEALQEIRTLALMGPPGLPGQIGP 417
Score = 38.5 bits (88), Expect = 0.008
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 28 VPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGP 86
+PG GE G G PG G+ G + ++ P P P+ PP PPG G
Sbjct: 423 IPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP----------PGPQG-PPGKDGPPGVKGE 471
Query: 87 GPGSGAPGSQEEEEEPGLVEGDPGD 111
G+PG + E+ E G G PG+
Sbjct: 472 NGHPGSPGEKGEKGETGQA-GSPGE 495
Score = 37.4 bits (85), Expect = 0.017
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYG-------NGLESE 53
A + G AG +G+ PG +PG G G +G PG G+ G G + E
Sbjct: 490 AGSPGEKGEAGEKGN-PGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGE 548
Query: 54 ELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--------- 104
+ + L L + PP P G PGP +G G + + +PG+
Sbjct: 549 KGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGP---AGPKGERGSKGDPGMTGPTGAAGL 605
Query: 105 --VEGDPGD 111
+ G PGD
Sbjct: 606 PGLHGPPGD 614
Score = 35.8 bits (81), Expect = 0.049
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG+ GE GE G G AG G E+ E + P PE PP P G PGP
Sbjct: 475 PGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG---PPGPPGLQGVPGPK 531
Query: 88 PGSGAPGSQEEEEEPGLVEGDPG 110
+G G++ E+ G +GD G
Sbjct: 532 GEAGLDGAKGEKGFQG-EKGDRG 553
Score = 34.3 bits (77), Expect = 0.14
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPE 71
GAAG +G G G GE G DY + E L L P +
Sbjct: 364 GAAGEQGPD---------GPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQ 414
Query: 72 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
PP PG PG G PG + E G G PGD P+
Sbjct: 415 IGPP---GAPGIPGQKGEIGLPGPPGHDGEKG-PRGKPGDMGPPGPQ 457
Score = 33.1 bits (74), Expect = 0.32
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 19/93 (20%)
Query: 29 PGAGGEAGEGAPGGAGDYGNGL----ESEELEPEELL-------------LEPEPEPEPE 71
PG G+ GE G G+Y + L S L P ++ ++ P P
Sbjct: 163 PGPQGQKGE--KGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGP 220
Query: 72 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL 104
P P PG PGP G PG + +PG+
Sbjct: 221 PGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGI 253
Score = 30.4 bits (67), Expect = 2.0
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 38 GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPR----PRAPPGAPGPGPGSGAP 93
G PG +G G+ + P L P P+ +P + R PG PG GAP
Sbjct: 219 GPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAP 278
Query: 94 GSQEE--EEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP 151
G + EPG+ GA P L + + ++ EK + N +
Sbjct: 279 GIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL------LGQKGEK-GDAGNSIGGGRGEPG 331
Query: 152 PPGNAGP 158
PPG GP
Sbjct: 332 PPGLPGP 338
Score = 29.6 bits (65), Expect = 3.5
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 75 PRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAE 134
P R PG PGP G PG + + GL G PG P + K + E
Sbjct: 127 PGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-GPPG-----QPGPQGQKGEKGQCGEYPH 180
Query: 135 KLKELQNEVEKQMNMSPPP 153
+L L N V ++PPP
Sbjct: 181 RLLPLLNSV----RLAPPP 195
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/166 (30%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPG---------GAGDYGNGLESEE 54
A A AG +G PG +PG GE G EG+PG GD GN +
Sbjct: 309 AKGAPGIAVAGMKGE-PG-----IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 362
Query: 55 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
EP L P P+ E PPG PG GA G Q + G +G+PG G
Sbjct: 363 GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKG-SKGEPGKG-- 419
Query: 115 EDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPP--PGNAGP 158
EM + + E E+ M PP PG GP
Sbjct: 420 -------------EMVDYNGNINEALQEIRTLALMGPPGLPGQIGP 452
Score = 38.1 bits (87), Expect = 0.010
Identities = 43/146 (29%), Positives = 59/146 (40%), Gaps = 26/146 (17%)
Query: 28 VPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGP 86
+PG GE G G PG G+ G + ++ P P P+ PP PPG G
Sbjct: 458 IPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP----------PGPQG-PPGKDGPPGVKGE 506
Query: 87 GPGSGAPGSQEEEEEPGL----VEGDPG-DGAIEDPELEAIKARVREME-EEAEKLKELQ 140
G+PG + E+ E G V G PG +G P L+ + E + A+ K Q
Sbjct: 507 NGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQ 566
Query: 141 NEVEKQMNMSPP--------PGNAGP 158
E + + P PG AGP
Sbjct: 567 GEKGDRGPLGLPGTPGPIGVPGPAGP 592
Score = 34.3 bits (77), Expect = 0.14
Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 28/146 (19%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG G+ G G PG G G+ S ++ P P P R PG PGP
Sbjct: 130 PGLPGDKGAIGMPGRVGSPGDAGLS--------IIGPRGPPGQ----PGTRGFPGFPGPI 177
Query: 88 PGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE--------------LEAIKARVREMEEEA 133
G PG + + GL G PG + + L ++ A +R + A
Sbjct: 178 GLDGKPGHPGPKGDMGLT-GPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIA 236
Query: 134 EKLKELQNEVEKQMNMSPPPGNAGPV 159
K ++ Q ++ PPG +GP+
Sbjct: 237 LKGEQSQASIQGPPGPPGPPGPSGPL 262
Score = 34.3 bits (77), Expect = 0.14
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 29 PGAGGEAGEGAPGGAGDYGN---------GLESEEL-----EPEELLLEPEPEPEPEEEP 74
PG G+ GE G G+Y + L S ++ E + ++ P P P
Sbjct: 201 PGPQGQKGE--KGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGP 258
Query: 75 PRPRAPPGAPGPGPGSGAPGSQEEEEEPGL 104
P PG PGP G PG + +PG+
Sbjct: 259 SGPLGHPGLPGPMGPPGLPGPPGPKGDPGI 288
Score = 34.3 bits (77), Expect = 0.14
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPE 71
GAAG +G G G GE G DY + E L L P +
Sbjct: 399 GAAGEQGPD---------GPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQ 449
Query: 72 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
PP PG PG G PG + E G G PGD P+
Sbjct: 450 IGPP---GAPGIPGQKGEIGLPGPPGHDGEKG-PRGKPGDMGPPGPQ 492
Score = 30.4 bits (67), Expect = 2.0
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 38 GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPR----PRAPPGAPGPGPGSGAP 93
G PG +G G+ + P L P P+ +P + R PG PG GAP
Sbjct: 254 GPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAP 313
Query: 94 GSQEE--EEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP 151
G + EPG+ GA P L + + ++ EK + N +
Sbjct: 314 GIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL------LGQKGEK-GDAGNSIGGGRGEPG 366
Query: 152 PPGNAGP 158
PPG GP
Sbjct: 367 PPGLPGP 373
Score = 28.9 bits (63), Expect = 6.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 54 ELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGA 113
+L E+ L E + P PP GP G PG + PG V G PGD
Sbjct: 94 QLLDEKWKLHSRRRREAPKTSPGCNCPPAFQGPTGRPGLPGDKGAIGMPGRV-GSPGDAG 152
Query: 114 I 114
+
Sbjct: 153 L 153
Score = 28.9 bits (63), Expect = 6.0
Identities = 32/116 (27%), Positives = 41/116 (35%), Gaps = 36/116 (31%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEP------------- 74
PG+ GE GE G G AG GL E P L+ P P+ E
Sbjct: 510 PGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEK 569
Query: 75 --------PRPRAPPGAPGPGPGSGAPGSQEEEEEPGL-----------VEGDPGD 111
P P G PGP +G G + + +PG+ + G PGD
Sbjct: 570 GDRGPLGLPGTPGPIGVPGP---AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGD 622
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/166 (30%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG-EGAPG---------GAGDYGNGLESEE 54
A A AG +G PG +PG GE G EG+PG GD GN +
Sbjct: 278 AKGAPGIAVAGMKGE-PG-----IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 331
Query: 55 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAI 114
EP L P P+ E PPG PG GA G Q + G +G+PG G
Sbjct: 332 GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKG-SKGEPGKG-- 388
Query: 115 EDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPP--PGNAGP 158
EM + + E E+ M PP PG GP
Sbjct: 389 -------------EMVDYNGNINEALQEIRTLALMGPPGLPGQIGP 421
Score = 38.5 bits (88), Expect = 0.008
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 28 VPGAGGEAG-EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGP 86
+PG GE G G PG G+ G + ++ P P P+ PP PPG G
Sbjct: 427 IPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP----------PGPQG-PPGKDGPPGVKGE 475
Query: 87 GPGSGAPGSQEEEEEPGLVEGDPGD 111
G+PG + E+ E G G PG+
Sbjct: 476 NGHPGSPGEKGEKGETGQA-GSPGE 499
Score = 37.4 bits (85), Expect = 0.017
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAG----EGAPGGAGDYG-------NGLESE 53
A + G AG +G+ PG +PG G G +G PG G+ G G + E
Sbjct: 494 AGSPGEKGEAGEKGN-PGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGE 552
Query: 54 ELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGL--------- 104
+ + L L + PP P G PGP +G G + + +PG+
Sbjct: 553 KGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGP---AGPKGERGSKGDPGMTGPTGAAGL 609
Query: 105 --VEGDPGD 111
+ G PGD
Sbjct: 610 PGLHGPPGD 618
Score = 37.0 bits (84), Expect = 0.022
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 29 PGAGGEAG-EGAPGGAGDYGNGLESEEL-------EPEELLLEPEPEPEPEEEPPRPRAP 80
PG G+ G G PG G G E + E + ++ P P P P
Sbjct: 174 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGH 233
Query: 81 PGAPGPGPGSGAPGSQEEEEEPGL 104
PG PGP G PG + +PG+
Sbjct: 234 PGLPGPMGPPGLPGPPGPKGDPGI 257
Score = 35.8 bits (81), Expect = 0.049
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
PG+ GE GE G G AG G E+ E + P PE PP P G PGP
Sbjct: 479 PGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG---PPGPPGLQGVPGPK 535
Query: 88 PGSGAPGSQEEEEEPGLVEGDPG 110
+G G++ E+ G +GD G
Sbjct: 536 GEAGLDGAKGEKGFQG-EKGDRG 557
Score = 34.3 bits (77), Expect = 0.14
Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 22/132 (16%)
Query: 29 PGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG 87
P G G G PG GD G + P + P R PG PGP
Sbjct: 121 PAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQ---------------PGTRGFPGFPGPI 165
Query: 88 PGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQM 147
G PG + + GL G PG P + K + E + ++ Q ++
Sbjct: 166 GLDGKPGHPGPKGDMGLT-GPPG-----QPGPQGQKGEKGQCGEYPHRGEQSQASIQGPP 219
Query: 148 NMSPPPGNAGPV 159
PPG +GP+
Sbjct: 220 GPPGPPGPSGPL 231
Score = 34.3 bits (77), Expect = 0.14
Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPE 71
GAAG +G G G GE G DY + E L L P +
Sbjct: 368 GAAGEQGPD---------GPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQ 418
Query: 72 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPE 118
PP PG PG G PG + E G G PGD P+
Sbjct: 419 IGPP---GAPGIPGQKGEIGLPGPPGHDGEKG-PRGKPGDMGPPGPQ 461
Score = 32.3 bits (72), Expect = 0.54
Identities = 41/154 (26%), Positives = 55/154 (35%), Gaps = 14/154 (9%)
Query: 12 GAAGGRGSGPGRRRHLVPGAGGEAGE-GAPGGAGDYGNGLESEELEPEELLLEPEPEPEP 70
G G G P R G G G PG +G G+ + P L P P+ +P
Sbjct: 196 GEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDP 255
Query: 71 EEEPPR----PRAPPGAPGPGPGSGAPGSQEE--EEEPGLVEGDPGDGAIEDPELEAIKA 124
+ R PG PG GAPG + EPG+ GA P L +
Sbjct: 256 GIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL-- 313
Query: 125 RVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGP 158
+ ++ EK + N + PPG GP
Sbjct: 314 ----LGQKGEK-GDAGNSIGGGRGEPGPPGLPGP 342
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,057,300
Number of Sequences: 37866
Number of extensions: 1274789
Number of successful extensions: 30863
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 1484
Number of HSP's that attempted gapping in prelim test: 13441
Number of HSP's gapped (non-prelim): 11245
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.