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Search of human proteins with 4758610
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758610 interferon regulatory factor 7 isoform a [Homo
sapiens]
(503 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 1055 0.0
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 1043 0.0
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens] 977 0.0
gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens] 166 6e-41
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 164 1e-40
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi... 163 3e-40
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens] 163 3e-40
gi|148833515 interferon regulatory factor 5 isoform c [Homo sapi... 163 4e-40
gi|148833492 interferon regulatory factor 5 isoform c [Homo sapi... 163 4e-40
gi|148833488 interferon regulatory factor 5 isoform c [Homo sapi... 163 4e-40
gi|4504725 interferon regulatory factor 3 [Homo sapiens] 153 4e-37
gi|5453700 interferon regulatory factor 6 [Homo sapiens] 149 8e-36
gi|167555104 interferon regulatory factor 4 [Homo sapiens] 121 1e-27
gi|25282407 interferon-stimulated transcription factor 3, gamma ... 107 2e-23
gi|4504567 interferon regulatory factor 8 [Homo sapiens] 89 9e-18
gi|153082752 interferon regulatory factor 2 [Homo sapiens] 66 8e-11
gi|4504721 interferon regulatory factor 1 [Homo sapiens] 64 4e-10
gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens] 54 3e-07
gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens] 54 3e-07
gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo ... 54 3e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 46 9e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 45 1e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 3e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 44 3e-04
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 44 3e-04
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 44 3e-04
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 44 3e-04
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 44 3e-04
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 44 3e-04
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 44 3e-04
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 1055 bits (2727), Expect = 0.0
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
Sbjct: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
Query: 61 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK 120
KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
Sbjct: 61 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK 120
Query: 121 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG 180
VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
Sbjct: 121 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG 180
Query: 181 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV 240
DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV
Sbjct: 181 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV 240
Query: 241 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV 300
ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
Sbjct: 241 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV 300
Query: 301 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE 360
LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
Sbjct: 301 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE 360
Query: 361 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR 420
LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
Sbjct: 361 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR 420
Query: 421 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 480
QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
Sbjct: 421 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 480
Query: 481 CLSSANSLYDDIECFLMELEQPA 503
CLSSANSLYDDIECFLMELEQPA
Sbjct: 481 CLSSANSLYDDIECFLMELEQPA 503
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 1043 bits (2698), Expect = 0.0
Identities = 497/497 (100%), Positives = 497/497 (100%)
Query: 7 RAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVA 66
RAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVA
Sbjct: 20 RAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVA 79
Query: 67 RGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVYALSR 126
RGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVYALSR
Sbjct: 80 RGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVYALSR 139
Query: 127 ELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQA 186
ELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQA
Sbjct: 140 ELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQA 199
Query: 187 VQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSP 246
VQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSP
Sbjct: 200 VQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSP 259
Query: 247 GPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG 306
GPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG
Sbjct: 260 GPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG 319
Query: 307 HPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQL 366
HPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQL
Sbjct: 320 HPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQL 379
Query: 367 WARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSP 426
WARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSP
Sbjct: 380 WARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSP 439
Query: 427 RYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSAN 486
RYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSAN
Sbjct: 440 RYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSAN 499
Query: 487 SLYDDIECFLMELEQPA 503
SLYDDIECFLMELEQPA
Sbjct: 500 SLYDDIECFLMELEQPA 516
>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
Length = 474
Score = 977 bits (2526), Expect = 0.0
Identities = 474/503 (94%), Positives = 474/503 (94%), Gaps = 29/503 (5%)
Query: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
Sbjct: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
Query: 61 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK 120
KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
Sbjct: 61 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK 120
Query: 121 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG 180
VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
Sbjct: 121 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG 180
Query: 181 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV 240
DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
Sbjct: 181 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG------------- 227
Query: 241 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV 300
EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
Sbjct: 228 ----------------EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV 271
Query: 301 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE 360
LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
Sbjct: 272 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE 331
Query: 361 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR 420
LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
Sbjct: 332 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR 391
Query: 421 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 480
QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
Sbjct: 392 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 451
Query: 481 CLSSANSLYDDIECFLMELEQPA 503
CLSSANSLYDDIECFLMELEQPA
Sbjct: 452 CLSSANSLYDDIECFLMELEQPA 474
>gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens]
Length = 504
Score = 166 bits (419), Expect = 6e-41
Identities = 146/496 (29%), Positives = 208/496 (41%), Gaps = 84/496 (16%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 CWREGPGTDQTEAEAPAAVPPPQGGPPG---------------PFLAHTHAGLQAPGPLP 173
C GP AP PP+ G P L+ T A P P
Sbjct: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTP 171
Query: 174 APAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAG 233
+ +Q L ++ DP P P PG PAG
Sbjct: 172 YSLLKEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPP----------------PGNPAG 215
Query: 234 --ELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDV 291
EL +E PGP PA+L P + Q P L SP L++
Sbjct: 216 FRELLSEVLE----PGPLPASL-------PPAGEQLLPDLLISPHMLPLTD------LEI 258
Query: 292 TIMYKGRTVLQKVVGHP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLR 344
Y+GR + +P C Y + + +QV FPSP ++P KQ
Sbjct: 259 KFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRF 318
Query: 345 YTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPI 404
YT +LL + GL L+L+G L+A R+ +CKV+W GP SA S P + R T +
Sbjct: 319 YTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKL 375
Query: 405 FDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEG 464
F F EL+ F+ Q P + I+ FG++ +P+EK L+ V++ P R+ LE
Sbjct: 376 FSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEM 435
Query: 465 TQREGVSSLDSSSLSL 480
E S DS L +
Sbjct: 436 FSGELSWSADSIRLQI 451
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 164 bits (416), Expect = 1e-40
Identities = 148/496 (29%), Positives = 208/496 (41%), Gaps = 74/496 (14%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 CWREGPGTDQTEAEAPAAVPPPQGGPPG---------------PFLAHTHAGLQAPGPLP 173
C GP AP PP+ G P L+ T A P P
Sbjct: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTP 171
Query: 174 APAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAG 233
+ +Q L L PV P P A PG PAG
Sbjct: 172 YSLLKEDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGPPA------PDPSPLAPPPGNPAG 225
Query: 234 --ELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDV 291
EL +E PGP PA+L P + Q P L SP L++
Sbjct: 226 FRELLSEVLE----PGPLPASL-------PPAGEQLLPDLLISPHMLPLTD------LEI 268
Query: 292 TIMYKGRTVLQKVVGHP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLR 344
Y+GR + +P C Y + + +QV FPSP ++P KQ
Sbjct: 269 KFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRF 328
Query: 345 YTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPI 404
YT +LL + GL L+L+G L+A R+ +CKV+W GP SA S P + R T +
Sbjct: 329 YTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKL 385
Query: 405 FDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEG 464
F F EL+ F+ Q P + I+ FG++ +P+EK L+ V++ P R+ LE
Sbjct: 386 FSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEM 445
Query: 465 TQREGVSSLDSSSLSL 480
E S DS L +
Sbjct: 446 FSGELSWSADSIRLQI 461
>gi|148833496 interferon regulatory factor 5 isoform b [Homo
sapiens]
Length = 498
Score = 163 bits (413), Expect = 3e-40
Identities = 147/496 (29%), Positives = 210/496 (42%), Gaps = 90/496 (18%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 CWREGPGTDQTEAEAPAAVPPPQGGPPG---------------PFLAHTHAGLQAPGPLP 173
C GP AP PP+ G P L+ T ++ P L
Sbjct: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTE-DVKWPPTLQ 170
Query: 174 APAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAG 233
P L +Q L ++ DP P P PG PAG
Sbjct: 171 PPT-----LRPPTLQPPTLQPPVVLGPPAPDPSPLAPP----------------PGNPAG 209
Query: 234 --ELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDV 291
EL +E PGP PA+L P + Q P L SP L++
Sbjct: 210 FRELLSEVLE----PGPLPASL-------PPAGEQLLPDLLISPHMLPLTD------LEI 252
Query: 292 TIMYKGRTVLQKVVGHP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLR 344
Y+GR + +P C Y + + +QV FPSP ++P KQ
Sbjct: 253 KFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRF 312
Query: 345 YTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPI 404
YT +LL + GL L+L+G L+A R+ +CKV+W GP SA S P + R T +
Sbjct: 313 YTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKL 369
Query: 405 FDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEG 464
F F EL+ F+ Q P + I+ FG++ +P+EK L+ V++ P R+ LE
Sbjct: 370 FSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEM 429
Query: 465 TQREGVSSLDSSSLSL 480
E S DS L +
Sbjct: 430 FSGELSWSADSIRLQI 445
>gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]
Length = 498
Score = 163 bits (413), Expect = 3e-40
Identities = 147/496 (29%), Positives = 210/496 (42%), Gaps = 90/496 (18%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 CWREGPGTDQTEAEAPAAVPPPQGGPPG---------------PFLAHTHAGLQAPGPLP 173
C GP AP PP+ G P L+ T ++ P L
Sbjct: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTE-DVKWPPTLQ 170
Query: 174 APAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAG 233
P L +Q L ++ DP P P PG PAG
Sbjct: 171 PPT-----LRPPTLQPPTLQPPVVLGPPAPDPSPLAPP----------------PGNPAG 209
Query: 234 --ELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDV 291
EL +E PGP PA+L P + Q P L SP L++
Sbjct: 210 FRELLSEVLE----PGPLPASL-------PPAGEQLLPDLLISPHMLPLTD------LEI 252
Query: 292 TIMYKGRTVLQKVVGHP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLR 344
Y+GR + +P C Y + + +QV FPSP ++P KQ
Sbjct: 253 KFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRF 312
Query: 345 YTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPI 404
YT +LL + GL L+L+G L+A R+ +CKV+W GP SA S P + R T +
Sbjct: 313 YTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKL 369
Query: 405 FDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEG 464
F F EL+ F+ Q P + I+ FG++ +P+EK L+ V++ P R+ LE
Sbjct: 370 FSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEM 429
Query: 465 TQREGVSSLDSSSLSL 480
E S DS L +
Sbjct: 430 FSGELSWSADSIRLQI 445
>gi|148833515 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 163 bits (412), Expect = 4e-40
Identities = 142/481 (29%), Positives = 206/481 (42%), Gaps = 70/481 (14%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 CWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQ 188
C GP AP PP+ G + LP+ + + +Q
Sbjct: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEE-ELQRMLPSLSLTEDVKWPPTLQ 170
Query: 189 QSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAG--ELYGWAVETTPSP 246
L ++ DP P P PG PAG EL +E P
Sbjct: 171 PPTLQPPVVLGPPAPDPSPLAPP----------------PGNPAGFRELLSEVLE----P 210
Query: 247 GPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG 306
GP PA+L P + Q P L SP L++ Y+GR +
Sbjct: 211 GPLPASL-------PPAGEQLLPDLLISPHMLPLTD------LEIKFQYRGRPPRALTIS 257
Query: 307 HP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHL 359
+P C Y + + +QV FPSP ++P KQ YT +LL + GL L
Sbjct: 258 NPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLIL 317
Query: 360 ELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRA 419
+L+G L+A R+ +CKV+W GP SA S P + R T +F F EL+ F+
Sbjct: 318 QLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNELILFQK 374
Query: 420 RQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLS 479
Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S DS L
Sbjct: 375 GQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQ 434
Query: 480 L 480
+
Sbjct: 435 I 435
>gi|148833492 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 163 bits (412), Expect = 4e-40
Identities = 142/481 (29%), Positives = 206/481 (42%), Gaps = 70/481 (14%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 CWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQ 188
C GP AP PP+ G + LP+ + + +Q
Sbjct: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEE-ELQRMLPSLSLTEDVKWPPTLQ 170
Query: 189 QSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAG--ELYGWAVETTPSP 246
L ++ DP P P PG PAG EL +E P
Sbjct: 171 PPTLQPPVVLGPPAPDPSPLAPP----------------PGNPAGFRELLSEVLE----P 210
Query: 247 GPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG 306
GP PA+L P + Q P L SP L++ Y+GR +
Sbjct: 211 GPLPASL-------PPAGEQLLPDLLISPHMLPLTD------LEIKFQYRGRPPRALTIS 257
Query: 307 HP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHL 359
+P C Y + + +QV FPSP ++P KQ YT +LL + GL L
Sbjct: 258 NPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLIL 317
Query: 360 ELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRA 419
+L+G L+A R+ +CKV+W GP SA S P + R T +F F EL+ F+
Sbjct: 318 QLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNELILFQK 374
Query: 420 RQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLS 479
Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S DS L
Sbjct: 375 GQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQ 434
Query: 480 L 480
+
Sbjct: 435 I 435
>gi|148833488 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 163 bits (412), Expect = 4e-40
Identities = 142/481 (29%), Positives = 206/481 (42%), Gaps = 70/481 (14%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 CWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQ 188
C GP AP PP+ G + LP+ + + +Q
Sbjct: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEE-ELQRMLPSLSLTEDVKWPPTLQ 170
Query: 189 QSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAG--ELYGWAVETTPSP 246
L ++ DP P P PG PAG EL +E P
Sbjct: 171 PPTLQPPVVLGPPAPDPSPLAPP----------------PGNPAGFRELLSEVLE----P 210
Query: 247 GPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG 306
GP PA+L P + Q P L SP L++ Y+GR +
Sbjct: 211 GPLPASL-------PPAGEQLLPDLLISPHMLPLTD------LEIKFQYRGRPPRALTIS 257
Query: 307 HP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHL 359
+P C Y + + +QV FPSP ++P KQ YT +LL + GL L
Sbjct: 258 NPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLIL 317
Query: 360 ELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRA 419
+L+G L+A R+ +CKV+W GP SA S P + R T +F F EL+ F+
Sbjct: 318 QLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNELILFQK 374
Query: 420 RQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLS 479
Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S DS L
Sbjct: 375 GQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQ 434
Query: 480 L 480
+
Sbjct: 435 I 435
>gi|4504725 interferon regulatory factor 3 [Homo sapiens]
Length = 427
Score = 153 bits (386), Expect = 4e-37
Identities = 138/495 (27%), Positives = 203/495 (41%), Gaps = 90/495 (18%)
Query: 10 PRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGR 69
PR+L WL+ ++ G EG+ W++++RT FR+PWKH R+D + D IF+AWA A G
Sbjct: 6 PRIL--PWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGA 63
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVYALSRELC 129
+ P G P+ T WK NFR AL + D S DP DPHK+Y
Sbjct: 64 YVP----GRDKPDLPT-----WKRNFRSALNRKEGLRLAEDRSKDPHDPHKIY------- 107
Query: 130 WREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQ 189
E + + P P GG G D Q
Sbjct: 108 --EFVNSGVGDFSQPDTSPDTNGG-----------------------GSTSD------TQ 136
Query: 190 SCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPGPQ 249
+ D LL + P+P PG P ++ P P PQ
Sbjct: 137 EDILDELL-GNMVLAPLP-------------------DPGPP-------SLAVAPEPCPQ 169
Query: 250 PAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEP-SPGALDVTIMYKGRTVLQKVVGHP 308
P + + P P L PS + + P +VT Y+GR V Q+ + P
Sbjct: 170 PLRSPSLDNPTP------FPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCP 223
Query: 309 SCTFLYGPPDPAVRATDPQQVAFPSPA-ELPDQKQLRYTEELLRHVAPGLHLELRGPQLW 367
L G + R V P P L D+ + Y +L + GL L G LW
Sbjct: 224 EGLRLVG-SEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLW 282
Query: 368 ARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPR 427
A+R+G C YW V S P +P++ + +FD F +L+ F R SPR
Sbjct: 283 AQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGR-SPR 341
Query: 428 YTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSANS 487
Y ++ G+ +P K LV+VK+ P R +E + G SSL+ +++ L +S+++
Sbjct: 342 YALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLE-NTVDLHISNSHP 400
Query: 488 L---YDDIECFLMEL 499
L D + +L +L
Sbjct: 401 LSLTSDQYKAYLQDL 415
>gi|5453700 interferon regulatory factor 6 [Homo sapiens]
Length = 467
Score = 149 bits (375), Expect = 8e-36
Identities = 139/509 (27%), Positives = 213/509 (41%), Gaps = 80/509 (15%)
Query: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKD-LSEADARI 59
MAL P R V WL+ ++ SG Y GL WL F++PWKH R E + I
Sbjct: 1 MALHPRR----VRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTI 56
Query: 60 FKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADP 118
FKAWAV G++ + + A WK RCAL +R F ++ D + + P +P
Sbjct: 57 FKAWAVETGKYQEG---------VDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNP 107
Query: 119 HKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGD 178
K+Y ++C +P PQG + PG + D
Sbjct: 108 VKIY----QVC----------------DIPQPQGS------------IINPGSTGSAPWD 135
Query: 179 KGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGW 238
+ D V + D L S P+ P G P+ A G + G
Sbjct: 136 EKD---NDVDEEDEEDEL-DQSQHHVPIQDTFPFLNINGSPMAPASVGNCSV------GN 185
Query: 239 AVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGR 298
P +P + +A P P + P L S T LD+ Y+G+
Sbjct: 186 CSPEAVWPKTEPLEMEVPQA--PIQPFYSSPELWISSLPMTD--------LDIKFQYRGK 235
Query: 299 TVLQKV-VGHPS-CTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELL 350
Q + V +P C YG P + +QV FP P + ++KQ +T +LL
Sbjct: 236 EYGQTMTVSNPQGCRLFYGDLGPMPDQEELFGPVSLEQVKFPGPEHITNEKQKLFTSKLL 295
Query: 351 RHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVF 410
+ GL LE+ G ++A R+ +CKVYW P +P+ L+ R +F F
Sbjct: 296 DVMDRGLILEVSGHAIYAIRLCQCKVYWSGPCAPSLVAPN----LIERQKKVKLFCLETF 351
Query: 411 FQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGV 470
+L+ + Q P + IYL FG++ G+P E+ L+LV++ P + R+ E +
Sbjct: 352 LSDLIAHQKGQIEKQPPFEIYLCFGEEWPDGKPLERKLILVQVIPVVARMIYEMFSGDFT 411
Query: 471 SSLDSSSLSLCLSSANSLYDDIECFLMEL 499
S DS S+ L +S+ + + D+I L +L
Sbjct: 412 RSFDSGSVRLQISTPD-IKDNIVAQLKQL 439
>gi|167555104 interferon regulatory factor 4 [Homo sapiens]
Length = 451
Score = 121 bits (304), Expect = 1e-27
Identities = 127/448 (28%), Positives = 190/448 (42%), Gaps = 66/448 (14%)
Query: 16 EWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSS 74
+WL+ +I SG Y GL W +E ++ FR+PWKH ++D + E DA +FKAWA+ +G++
Sbjct: 26 QWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKF---- 81
Query: 75 RGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRELCWREG 133
R G P+ T WKT RCAL + F L + S D +DP+KVY + E +
Sbjct: 82 REGIDKPDPPT-----WKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKK-- 134
Query: 134 PGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLA 193
G Q E PQ P+ T P P+ L A Q
Sbjct: 135 -GAKQLTLE------DPQMSMSHPYTMTT--------PYPS---------LPAQQVHNYM 170
Query: 194 DHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPGPQPAAL 253
L SW D VP + E P+T G + W P +
Sbjct: 171 MPPLDRSW-RDYVPDQPHPEIPYQCPMTFGPRG---------HHW-----QGPACENGCQ 215
Query: 254 TTGEAAAPESPHQAEPYLSPSPSACTA-VQEPSPGALDVTIMYKGRTVLQKVVGHP-SCT 311
TG A P P + PS +A S L + + Y+ V + P C
Sbjct: 216 VTGTFYACAPPESQAPGVPTEPSIRSAEALAFSDCRLHICLYYREILVKELTTSSPEGCR 275
Query: 312 FLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRM 371
+G A++ QV FP P D Q + E+LL H+ G+ L + L+A+R+
Sbjct: 276 ISHG---HTYDASNLDQVLFPYP---EDNGQRKNIEKLLSHLERGVVLWMAPDGLYAKRL 329
Query: 372 GKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIY 431
+ ++YW+ GP + L R+ +FD + F EL F A R PR+ +
Sbjct: 330 CQSRIYWD--GPLALCNDRPNK--LERDQTCKLFDTQQFLSELQAF-AHHGRSLPRFQVT 384
Query: 432 LGFGQDLSAGRPKEKSLVLVKLEPWLCR 459
L FG++ + +++ L+ +EP L R
Sbjct: 385 LCFGEEFPDPQ-RQRKLITAHVEPLLAR 411
>gi|25282407 interferon-stimulated transcription factor 3, gamma
48kDa [Homo sapiens]
Length = 393
Score = 107 bits (268), Expect = 2e-23
Identities = 111/460 (24%), Positives = 179/460 (38%), Gaps = 87/460 (18%)
Query: 17 WLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGRWPPSSR 75
W++ ++ SG + G+ W D A+T FR+PWKH ++D E DA FKAWA+ +G++
Sbjct: 15 WVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKY----- 69
Query: 76 GGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRELCWREGP 134
E +T A WKT RCAL + F + + D A+P+KVY L P
Sbjct: 70 -----KEGDTGGPAVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPPGIVSGQP 124
Query: 135 GTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLAD 194
GT + ++ H+ + + A Q+C
Sbjct: 125 GTQKVPSK------------------RQHSSVSSERKEEEDA-----------MQNC--- 152
Query: 195 HLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPGPQPAALT 254
T +P Q+ L A G G ++ ++ S P+P +T
Sbjct: 153 -------------TLSPSVLQDSLNNEEEGASG-----GAVHSDIGSSSSSSSPEPQEVT 194
Query: 255 -TGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFL 313
T EA E L P P +L +T +Y GR V + V C +
Sbjct: 195 DTTEAPFQGDQRSLEFLLPPEPDY----------SLLLTFIYNGRVVGEAQVQSLDCRLV 244
Query: 314 YGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGK 373
+P+ + +QV FP P L T+ LL + G+ + L+ +R+
Sbjct: 245 ---AEPSGSESSMEQVLFPKPGPLEP------TQRLLSQLERGILVASNPRGLFVQRLCP 295
Query: 374 CKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIYLG 433
+ W P P LLP N +F F ++LV + + P++ + L
Sbjct: 296 IPISWNAPQAPPGPGPH----LLPSNECVELFRTAYFCRDLVRY-FQGLGPPPKFQVTLN 350
Query: 434 FGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSL 473
F ++ ++L+ VK+E R LE T + + L
Sbjct: 351 FWEESHGSSHTPQNLITVKMEQAFARYLLEQTPEQQAAIL 390
>gi|4504567 interferon regulatory factor 8 [Homo sapiens]
Length = 426
Score = 89.0 bits (219), Expect = 9e-18
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 16 EWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSS 74
+WL+ +I S Y GL W +E ++ FR+PWKH ++D + E DA IFKAWAV +G++
Sbjct: 12 QWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF---- 67
Query: 75 RGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRE 127
E + AE A WKT RCAL + F + D S D ++P+KVY + E
Sbjct: 68 ------KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE 115
Score = 46.6 bits (109), Expect = 5e-05
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 291 VTIMYKGRTVLQKVVGHPS-CTFLYGPPD-PAVRATDPQQ---VAFPSPAELPDQKQLRY 345
++ Y G+ V Q P C P P + P+ V FP +P ++Q +
Sbjct: 207 ISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGTKLYGPEGLELVRFPPADAIPSERQRQV 266
Query: 346 TEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIF 405
T +L H+ G+ L ++ +R+ + +V+ P+ L R+ +F
Sbjct: 267 TRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNK----LERDEVVQVF 322
Query: 406 DFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLE 454
D FF+EL +F Q R P + L FG++ P L+LV++E
Sbjct: 323 DTSQFFRELQQFYNSQGR-LPDGRVVLCFGEEFPDMAPLRSKLILVQIE 370
>gi|153082752 interferon regulatory factor 2 [Homo sapiens]
Length = 349
Score = 65.9 bits (159), Expect = 8e-11
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGR 69
R+ WL +I+S GL+WL++ + F++PW H AR E DA +F+ WA+ G+
Sbjct: 5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 64
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNS 112
P G P+ +T WK NFRCA+ S ++D S
Sbjct: 65 HQP----GVDKPDPKT-----WKANFRCAMNSLPDIEEVKDKS 98
>gi|4504721 interferon regulatory factor 1 [Homo sapiens]
Length = 325
Score = 63.5 bits (153), Expect = 4e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARK--DLSEADARIFKAWAVARG 68
R+ WL +I+S GL W+++ F++PWKH A+ D+++ DA +F++WA+ G
Sbjct: 5 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINK-DACLFRSWAIHTG 63
Query: 69 RWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNS 112
R+ + G P+ +T WK NFRCA+ S ++D S
Sbjct: 64 RY----KAGEKEPDPKT-----WKANFRCAMNSLPDIEEVKDQS 98
>gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 54.3 bits (129), Expect = 3e-07
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 21 EISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPP 80
+I SGCY GL W D +T FR+PWKH A++ ++AW V +G+ + PP
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAPP 67
Query: 81 P 81
P
Sbjct: 68 P 68
>gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 54.3 bits (129), Expect = 3e-07
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 21 EISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPP 80
+I SGCY GL W D +T FR+PWKH A++ ++AW V +G+ + PP
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAPP 67
Query: 81 P 81
P
Sbjct: 68 P 68
>gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo
sapiens]
Length = 362
Score = 54.3 bits (129), Expect = 3e-07
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 21 EISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPP 80
+I SGCY GL W D +T FR+PWKH A++ ++AW V +G+ + PP
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAPP 67
Query: 81 P 81
P
Sbjct: 68 P 68
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.8 bits (107), Expect = 9e-05
Identities = 66/227 (29%), Positives = 76/227 (33%), Gaps = 62/227 (27%)
Query: 141 AEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTAS 200
A A + PP G G A A GP PAPAG A L A
Sbjct: 120 APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA----------LAAR 169
Query: 201 WGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGE-----LYGWA---------------V 240
G P P PG G GPG PAG L G A V
Sbjct: 170 AGPGPGPGPGPGPGP-----------GPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLV 218
Query: 241 ETTPS---PGPQPAALTTG-------EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALD 290
P+ P P+PAA T AAAP +P P +P+P+A A P P A
Sbjct: 219 NNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPA-- 276
Query: 291 VTIMYKGRTVLQKVVGHPSCTFLYGP--PDPAVRATDPQQVAFPSPA 335
L + GHP+ P P PA A P+PA
Sbjct: 277 -------PATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPA 316
Score = 38.1 bits (87), Expect = 0.019
Identities = 46/152 (30%), Positives = 54/152 (35%), Gaps = 7/152 (4%)
Query: 134 PGTDQTEAEAPAA-VPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCL 192
P Q A AA P P G P G A P P G K + + VQ +
Sbjct: 300 PAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP---GVKAESPKRVVQAAPP 356
Query: 193 ADHLLTASWGADPVPTKAPGEGQEG-LPLTGACAG-GPGLPAGELYGWAVETTPSPGPQP 250
A L AS A + G +G LP A PG P G G A T S P
Sbjct: 357 AAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTP 416
Query: 251 AALTTGEAAAPESPHQAEPYLSPSPSACTAVQ 282
A T+G A +P P L P T +Q
Sbjct: 417 TATTSG-IRATLTPTVLAPRLPQPPQNPTNIQ 447
Score = 37.7 bits (86), Expect = 0.025
Identities = 63/250 (25%), Positives = 71/250 (28%), Gaps = 39/250 (15%)
Query: 115 PADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHT-----------H 163
PA P K A L R GPG P P G P GP A T H
Sbjct: 154 PAGPAKP-AGPAALAARAGPGPGPGPGPGPG---PGPGKPAGPGAAQTLNGSAALLNSHH 209
Query: 164 AGLQAPG----------PLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGE 213
A A PLP PA + + S A P P
Sbjct: 210 AAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAA 269
Query: 214 GQEGLPLTGACAGGPGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSP 273
P A PG PAG A P P + G A AP +S
Sbjct: 270 PPPPPPAPATLARPPGHPAGP--PTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSG 327
Query: 274 SPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATD-----PQQ 328
P A P+PG K + + V P PA A Q
Sbjct: 328 QPGPGAAAAAPAPGV-------KAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQ 380
Query: 329 VAFPSPAELP 338
A PSPA +P
Sbjct: 381 GALPSPAAVP 390
Score = 35.4 bits (80), Expect = 0.12
Identities = 43/160 (26%), Positives = 53/160 (33%), Gaps = 44/160 (27%)
Query: 143 APAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWG 202
APAA PPP PP P G A P APA
Sbjct: 265 APAAAPPPP--PPAPATLARPPGHPAGPPTAAPAV------------------------- 297
Query: 203 ADPVPTKAPGEGQEGL-PLTGACAGGPGLPAGELYGWAVETTPSPGPQ-----------P 250
P P A G G P AGGP +G+ A P+PG + P
Sbjct: 298 --PPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAP 355
Query: 251 AALTTGEAAAPESPHQA---EPYLSPSPSACTAVQEPSPG 287
A T A+ P S + P + + + AV P+PG
Sbjct: 356 PAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPG 395
Score = 30.4 bits (67), Expect = 3.9
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 211 PGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPY 270
PG PL A GP PA +L + S P PAA AA PE P A P
Sbjct: 105 PGPPSPRRPLVPA---GPAPPAAKLRPPPEGSAGSCAPVPAAAAV--AAGPE-PAPAGPA 158
Query: 271 LSPSPSACTAVQEPSPG 287
P+A A P PG
Sbjct: 159 KPAGPAALAARAGPGPG 175
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 45.4 bits (106), Expect = 1e-04
Identities = 70/265 (26%), Positives = 85/265 (32%), Gaps = 73/265 (27%)
Query: 133 GPGTDQTEAEAPAAV-PPPQGGPPGPFLAHTHAGLQAPGP----LPAPAGDKGDLLLQAV 187
G T Q A PA PPPQGGPP P G Q GP P P G + L
Sbjct: 445 GRQTSQQPAGPPAQQRPPPQGGPPQP-----GPGPQRQGPPLQQRPPPQGQQHLSGLGPP 499
Query: 188 QQSCLADHLLTASWGADPVPTKAP------------GEGQEGLPLTGACAGGPGLPAGEL 235
S L L P PT AP G+G++ P+ AGGPG P
Sbjct: 500 AGSPLPQRL--------PSPTSAPQQPASQAAPPTQGQGRQSRPV----AGGPGAPP--- 544
Query: 236 YGWAVETTPSPGPQ-----PAALTTGEAAAPESP-----------HQAEPYLSPSPSACT 279
A SP PQ P A + P P Q P P P+ T
Sbjct: 545 ---AARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPT 601
Query: 280 ---------------AVQEPSPGALDVTIMYKGRTVLQ--KVVGHPSCTFLYGPPDPAVR 322
Q+P P K + + + V P+ GPP P +
Sbjct: 602 RQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLN 661
Query: 323 ATDPQQVAFPSPAELPDQKQLRYTE 347
+ AF P P + L E
Sbjct: 662 KSQSLTNAFNLPEPAPPRPSLSQDE 686
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 44.3 bits (103), Expect = 3e-04
Identities = 67/235 (28%), Positives = 83/235 (35%), Gaps = 29/235 (12%)
Query: 143 APAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQ-SCLADHLLTASW 201
+P A PPPQ P A LQAP P P + L + Q + LA HLL A +
Sbjct: 387 SPLATPPPQAPP-----ALALPPLQAP-PSPPASPPLSPLATPSPQAPNALAVHLLQAPF 440
Query: 202 GADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPGPQPAALTTGEAAAP 261
P P P A P L ++ PSP PA+ +A P
Sbjct: 441 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSP---PASPPMSPSATP 497
Query: 262 ESPHQAEPYLS--------PSPSACTAVQEPSPGAL-DVTIMYKGRTVLQKVVGHPSCTF 312
P QA P L+ P P A A+ P AL + G+ P
Sbjct: 498 --PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPL 555
Query: 313 LYGPPD-PAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQL 366
PP P V A QV PSP P + R R PG + GP+L
Sbjct: 556 ATPPPQAPPVLAAPLLQVP-PSPPASPTLQAPR------RPPTPGPDTSVSGPRL 603
Score = 39.3 bits (90), Expect = 0.008
Identities = 49/154 (31%), Positives = 58/154 (37%), Gaps = 23/154 (14%)
Query: 135 GTDQTEAEAPAAVPPPQGGPP----GPFLA-HTHAGLQAPGPLPA-PAGDKGDLLLQAVQ 188
G T A AP PPP P GP LA H+ + P L +G +G
Sbjct: 600 GPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPP 659
Query: 189 QSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVE----TTP 244
+ LA A+W P P A G G PL A GPG G + E TP
Sbjct: 660 DAELAA-CHPAAWSRGPAPPLA-FRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATP 717
Query: 245 S-----PGPQP------AALTTGEAAAPESPHQA 267
+ PGP P AA G A+ SP QA
Sbjct: 718 APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQA 751
Score = 33.9 bits (76), Expect = 0.35
Identities = 67/282 (23%), Positives = 88/282 (31%), Gaps = 37/282 (13%)
Query: 132 EGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTH--AGLQAPGPLPAP-AGDKGDLLLQAVQ 188
E P A A P G P P +A AG + P PAP A +
Sbjct: 149 EAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKS 208
Query: 189 QSCLADHLLTASWGADPVPTKAPGEG------------QEGLPLTGACAGGP---GLPAG 233
S ++H T P + P G PL+ GP G P
Sbjct: 209 VSSASEHSTTEP---SPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRA 265
Query: 234 ELYGWAVETTPSPGPQPAALTTG--EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDV 291
+ + +P +T +AA P + P +PSPSA A+Q +P L
Sbjct: 266 PAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSA--ALQSQAPPTLPA 323
Query: 292 TIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLR 351
T + Q P PP P + P PSP P + T L
Sbjct: 324 T-PHSSSLTCQLATPLP-----LAPPSP---SAPPSLQTLPSPPATPPSQA---TTSLGS 371
Query: 352 HVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPA 393
H L P L + + PP A PS PA
Sbjct: 372 PTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPA 413
Score = 32.0 bits (71), Expect = 1.3
Identities = 42/155 (27%), Positives = 52/155 (33%), Gaps = 28/155 (18%)
Query: 134 PGTDQTEAEAPAAVPPPQGGPP--GPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSC 191
P + +P+A PPPQ PP P L QAP L P LQA+
Sbjct: 483 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPP-------LQALPSP- 534
Query: 192 LADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPGPQPA 251
AS+ P +AP LP++ P P L ++ PSP P
Sbjct: 535 ------PASF-----PGQAPFSPSASLPMSPLATPPPQAPP-VLAAPLLQVPPSPPASPT 582
Query: 252 ALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSP 286
AP P P S S T P P
Sbjct: 583 ------LQAPRRPPTPGPDTSVSGPRLTLALAPGP 611
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 44.3 bits (103), Expect = 3e-04
Identities = 67/235 (28%), Positives = 83/235 (35%), Gaps = 29/235 (12%)
Query: 143 APAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQ-SCLADHLLTASW 201
+P A PPPQ P A LQAP P P + L + Q + LA HLL A +
Sbjct: 348 SPLATPPPQAPP-----ALALPPLQAP-PSPPASPPLSPLATPSPQAPNALAVHLLQAPF 401
Query: 202 GADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPGPQPAALTTGEAAAP 261
P P P A P L ++ PSP PA+ +A P
Sbjct: 402 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSP---PASPPMSPSATP 458
Query: 262 ESPHQAEPYLS--------PSPSACTAVQEPSPGAL-DVTIMYKGRTVLQKVVGHPSCTF 312
P QA P L+ P P A A+ P AL + G+ P
Sbjct: 459 --PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPL 516
Query: 313 LYGPPD-PAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQL 366
PP P V A QV PSP P + R R PG + GP+L
Sbjct: 517 ATPPPQAPPVLAAPLLQVP-PSPPASPTLQAPR------RPPTPGPDTSVSGPRL 564
Score = 39.3 bits (90), Expect = 0.008
Identities = 49/154 (31%), Positives = 58/154 (37%), Gaps = 23/154 (14%)
Query: 135 GTDQTEAEAPAAVPPPQGGPP----GPFLA-HTHAGLQAPGPLPA-PAGDKGDLLLQAVQ 188
G T A AP PPP P GP LA H+ + P L +G +G
Sbjct: 561 GPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPP 620
Query: 189 QSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVE----TTP 244
+ LA A+W P P A G G PL A GPG G + E TP
Sbjct: 621 DAELAA-CHPAAWSRGPAPPLA-FRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATP 678
Query: 245 S-----PGPQP------AALTTGEAAAPESPHQA 267
+ PGP P AA G A+ SP QA
Sbjct: 679 APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQA 712
Score = 32.0 bits (71), Expect = 1.3
Identities = 42/155 (27%), Positives = 52/155 (33%), Gaps = 28/155 (18%)
Query: 134 PGTDQTEAEAPAAVPPPQGGPP--GPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSC 191
P + +P+A PPPQ PP P L QAP L P LQA+
Sbjct: 444 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPP-------LQALPSP- 495
Query: 192 LADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPGPQPA 251
AS+ P +AP LP++ P P L ++ PSP P
Sbjct: 496 ------PASF-----PGQAPFSPSASLPMSPLATPPPQAPP-VLAAPLLQVPPSPPASPT 543
Query: 252 ALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSP 286
AP P P S S T P P
Sbjct: 544 ------LQAPRRPPTPGPDTSVSGPRLTLALAPGP 572
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 43.9 bits (102), Expect = 3e-04
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 140 EAEAPAAVPPPQGGPPGPFLAHTHAGLQAP-GP--LPAPAGDKGDLLLQAVQQSCLADHL 196
+++A PP GPPGP H GL P GP LP P G KGD +Q H
Sbjct: 263 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGY-------HG 315
Query: 197 LTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLP 231
G +P K +G G+ + G G PG+P
Sbjct: 316 RKGERGMPGMPGKHGAKGAPGIAVAG-MKGEPGIP 349
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 43.9 bits (102), Expect = 3e-04
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 140 EAEAPAAVPPPQGGPPGPFLAHTHAGLQAP-GP--LPAPAGDKGDLLLQAVQQSCLADHL 196
+++A PP GPPGP H GL P GP LP P G KGD +Q H
Sbjct: 212 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGY-------HG 264
Query: 197 LTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLP 231
G +P K +G G+ + G G PG+P
Sbjct: 265 RKGERGMPGMPGKHGAKGAPGIAVAG-MKGEPGIP 298
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 43.9 bits (102), Expect = 3e-04
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 140 EAEAPAAVPPPQGGPPGPFLAHTHAGLQAP-GP--LPAPAGDKGDLLLQAVQQSCLADHL 196
+++A PP GPPGP H GL P GP LP P G KGD +Q H
Sbjct: 201 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGY-------HG 253
Query: 197 LTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLP 231
G +P K +G G+ + G G PG+P
Sbjct: 254 RKGERGMPGMPGKHGAKGAPGIAVAG-MKGEPGIP 287
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 43.9 bits (102), Expect = 3e-04
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 140 EAEAPAAVPPPQGGPPGPFLAHTHAGLQAP-GP--LPAPAGDKGDLLLQAVQQSCLADHL 196
+++A PP GPPGP H GL P GP LP P G KGD +Q H
Sbjct: 203 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGY-------HG 255
Query: 197 LTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLP 231
G +P K +G G+ + G G PG+P
Sbjct: 256 RKGERGMPGMPGKHGAKGAPGIAVAG-MKGEPGIP 289
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 43.9 bits (102), Expect = 3e-04
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 140 EAEAPAAVPPPQGGPPGPFLAHTHAGLQAP-GP--LPAPAGDKGDLLLQAVQQSCLADHL 196
+++A PP GPPGP H GL P GP LP P G KGD +Q H
Sbjct: 206 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGY-------HG 258
Query: 197 LTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLP 231
G +P K +G G+ + G G PG+P
Sbjct: 259 RKGERGMPGMPGKHGAKGAPGIAVAG-MKGEPGIP 292
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 43.9 bits (102), Expect = 3e-04
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 140 EAEAPAAVPPPQGGPPGPFLAHTHAGLQAP-GP--LPAPAGDKGDLLLQAVQQSCLADHL 196
+++A PP GPPGP H GL P GP LP P G KGD +Q H
Sbjct: 241 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGY-------HG 293
Query: 197 LTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLP 231
G +P K +G G+ + G G PG+P
Sbjct: 294 RKGERGMPGMPGKHGAKGAPGIAVAG-MKGEPGIP 327
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,818,859
Number of Sequences: 37866
Number of extensions: 1837626
Number of successful extensions: 12128
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 625
Number of HSP's that attempted gapping in prelim test: 9259
Number of HSP's gapped (non-prelim): 3044
length of query: 503
length of database: 18,247,518
effective HSP length: 107
effective length of query: 396
effective length of database: 14,195,856
effective search space: 5621558976
effective search space used: 5621558976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.