Guide to the Human Genome
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Name: IRF5 Sequence: fasta or formatted (498aa) NCBI GI: 148833496
Description:

interferon regulatory factor 5 isoform b

Referenced in:

Interferon

Other entries for this name:
alt mRNA [498aa] interferon regulatory factor 5 isoform b
alt prot [488aa] interferon regulatory factor 5 isoform c
alt prot [488aa] interferon regulatory factor 5 isoform c
alt prot [514aa] interferon regulatory factor 5 isoform d
alt prot [488aa] interferon regulatory factor 5 isoform c
alt prot [504aa] interferon regulatory factor 5 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         28           2
 C cysteine            2.0         10           1
 D aspartate           4.6         23           1
 E glutamate           7.2         36           8
 F phenylalanine       4.0         20           2
 G glycine             6.0         30           1
 H histidine           1.8          9           2
 I isoleucine          3.8         19           1
 K lysine              4.4         22           2
 L leucine            11.4         57           3
 M methionine          1.6          8           1
 N asparagine          2.8         14           1
 P proline            13.7         68           3
 Q glutamine           7.2         36           2
 R arginine            5.4         27           2
 S serine              5.6         28           1
 T threonine           3.8         19           1
 V valine              4.6         23           2
 W tryptophan          2.2         11           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon regulatory factor 5 isoform b 
IRF5                  1.000   interferon regulatory factor 5 isoform b 
IRF5                  0.990   interferon regulatory factor 5 isoform d 
IRF5                  0.972   interferon regulatory factor 5 isoform c 
IRF5                  0.972   interferon regulatory factor 5 isoform c 
IRF5                  0.972   interferon regulatory factor 5 isoform c 
IRF5                  0.966   interferon regulatory factor 5 isoform a 
IRF6                  0.415   interferon regulatory factor 6 
IRF4                  0.178   interferon regulatory factor 4 
IRF8                  0.167   interferon regulatory factor 8 
IRF3                  0.143   interferon regulatory factor 3 
IRF7                  0.135   interferon regulatory factor 7 isoform d 
IRF7                  0.135   interferon regulatory factor 7 isoform a 
IRF7                  0.129   interferon regulatory factor 7 isoform b 
IRF9                  0.116   interferon-stimulated transcription factor 3, gamma ...
IRF2                  0.085   interferon regulatory factor 2 
IRF1                  0.082   interferon regulatory factor 1 
MLL4                  0.029   myeloid/lymphoid or mixed-lineage leukemia 4 
MLL2                  0.026   myeloid/lymphoid or mixed-lineage leukemia 2 
KDM6B                 0.023   lysine (K)-specific demethylase 6B 
FMN1                  0.022   formin 1 
VASP                  0.022   vasodilator-stimulated phosphoprotein 
CCNK                  0.022   cyclin K isoform 1 
YLPM1                 0.022   YLP motif containing 1 
WBP11                 0.022   WW domain binding protein 11 
LOC100293297          0.020   PREDICTED: similar to hCG1785205 
LOC100288352          0.020   PREDICTED: similar to hCG1785205 
LOC100288352          0.020   PREDICTED: hypothetical protein XP_002343764 
FMNL2                 0.020   formin-like 2 
SFRS15                0.019   splicing factor, arginine/serine-rich 15 isoform 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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