Guide to the Human Genome
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Name: IRF5 Sequence: fasta or formatted (488aa) NCBI GI: 148833515
Description:

interferon regulatory factor 5 isoform c

Referenced in:

Interferon

Other entries for this name:
alt prot [498aa] interferon regulatory factor 5 isoform b
alt mRNA [488aa] interferon regulatory factor 5 isoform c
alt mRNA [488aa] interferon regulatory factor 5 isoform c
alt prot [514aa] interferon regulatory factor 5 isoform d
alt prot [498aa] interferon regulatory factor 5 isoform b
alt prot [504aa] interferon regulatory factor 5 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         28           2
 C cysteine            2.0         10           1
 D aspartate           4.7         23           1
 E glutamate           7.4         36           8
 F phenylalanine       4.1         20           2
 G glycine             6.1         30           1
 H histidine           1.8          9           2
 I isoleucine          3.9         19           1
 K lysine              4.5         22           2
 L leucine            11.3         55           3
 M methionine          1.6          8           1
 N asparagine          2.9         14           1
 P proline            13.1         64           3
 Q glutamine           7.2         35           2
 R arginine            5.3         26           2
 S serine              5.7         28           1
 T threonine           3.5         17           1
 V valine              4.7         23           2
 W tryptophan          2.3         11           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon regulatory factor 5 isoform c 
IRF5                  1.000   interferon regulatory factor 5 isoform c 
IRF5                  1.000   interferon regulatory factor 5 isoform c 
IRF5                  0.992   interferon regulatory factor 5 isoform b 
IRF5                  0.992   interferon regulatory factor 5 isoform b 
IRF5                  0.989   interferon regulatory factor 5 isoform a 
IRF5                  0.981   interferon regulatory factor 5 isoform d 
IRF6                  0.428   interferon regulatory factor 6 
IRF4                  0.184   interferon regulatory factor 4 
IRF8                  0.175   interferon regulatory factor 8 
IRF3                  0.150   interferon regulatory factor 3 
IRF7                  0.138   interferon regulatory factor 7 isoform d 
IRF7                  0.138   interferon regulatory factor 7 isoform a 
IRF7                  0.133   interferon regulatory factor 7 isoform b 
IRF9                  0.122   interferon-stimulated transcription factor 3, gamma ...
IRF2                  0.087   interferon regulatory factor 2 
IRF1                  0.084   interferon regulatory factor 1 
MLL4                  0.032   myeloid/lymphoid or mixed-lineage leukemia 4 
MLL2                  0.027   myeloid/lymphoid or mixed-lineage leukemia 2 
KDM6B                 0.026   lysine (K)-specific demethylase 6B 
LOC100288352          0.021   PREDICTED: hypothetical protein XP_002343764 
MNT                   0.020   MAX binding protein 
LOC100293297          0.020   PREDICTED: similar to hCG1785205 
LOC100288352          0.020   PREDICTED: similar to hCG1785205 
VASP                  0.019   vasodilator-stimulated phosphoprotein 
WBP11                 0.019   WW domain binding protein 11 
UBN2                  0.019   ubinuclein 2 
LOC100134663          0.018   PREDICTED: hypothetical protein, partial 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
GGN                   0.017   gametogenetin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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