Guide to the Human Genome
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Name: IRF7 Sequence: fasta or formatted (516aa) NCBI GI: 98985819
Description:

interferon regulatory factor 7 isoform d

Referenced in:

Interferon

Other entries for this name:
alt prot [503aa] interferon regulatory factor 7 isoform a
alt prot [474aa] interferon regulatory factor 7 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         56           3
 C cysteine            2.7         14           1
 D aspartate           4.3         22           2
 E glutamate           6.8         35           2
 F phenylalanine       3.1         16           2
 G glycine             9.5         49           3
 H histidine           1.9         10           1
 I isoleucine          1.2          6           1
 K lysine              2.9         15           1
 L leucine            10.3         53           3
 M methionine          1.0          5           1
 N asparagine          0.8          4           1
 P proline            12.4         64           3
 Q glutamine           4.3         22           2
 R arginine            7.2         37           2
 S serine              6.6         34           3
 T threonine           4.8         25           2
 V valine              5.0         26           2
 W tryptophan          2.3         12           1
 Y tyrosine            2.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon regulatory factor 7 isoform d 
IRF7                  0.961   interferon regulatory factor 7 isoform a 
IRF7                  0.889   interferon regulatory factor 7 isoform b 
IRF5                  0.133   interferon regulatory factor 5 isoform a 
IRF5                  0.131   interferon regulatory factor 5 isoform d 
IRF5                  0.130   interferon regulatory factor 5 isoform b 
IRF5                  0.130   interferon regulatory factor 5 isoform b 
IRF5                  0.130   interferon regulatory factor 5 isoform c 
IRF5                  0.130   interferon regulatory factor 5 isoform c 
IRF5                  0.130   interferon regulatory factor 5 isoform c 
IRF3                  0.121   interferon regulatory factor 3 
IRF6                  0.115   interferon regulatory factor 6 
IRF4                  0.091   interferon regulatory factor 4 
IRF9                  0.077   interferon-stimulated transcription factor 3, gamma ...
IRF8                  0.060   interferon regulatory factor 8 
IRF2                  0.039   interferon regulatory factor 2 
IRF1                  0.037   interferon regulatory factor 1 
LOC100293297          0.027   PREDICTED: similar to hCG1785205 
LOC100288352          0.027   PREDICTED: similar to hCG1785205 
LOC100288352          0.027   PREDICTED: hypothetical protein XP_002343764 
TAF4                  0.020   TBP-associated factor 4 
SYN1                  0.019   synapsin I isoform Ia 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
COL13A1               0.018   alpha 1 type XIII collagen isoform 20 
COL13A1               0.018   alpha 1 type XIII collagen isoform 19 
COL13A1               0.018   alpha 1 type XIII collagen isoform 18 
COL13A1               0.018   alpha 1 type XIII collagen isoform 17 
COL13A1               0.018   alpha 1 type XIII collagen isoform 16 
COL13A1               0.018   alpha 1 type XIII collagen isoform 15 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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