Guide to the Human Genome
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Name: LOC100288352 Sequence: fasta or formatted (362aa) NCBI GI: 239746471
Description:

PREDICTED: hypothetical protein XP_002343764

Not currently referenced in the text

Other entries for this name:
alt prot {362aa} PREDICTED: similar to hCG1785205
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         38           3
 C cysteine            4.4         16           1
 D aspartate           3.0         11           1
 E glutamate           6.1         22           2
 F phenylalanine       1.1          4           1
 G glycine             8.8         32           2
 H histidine           3.0         11           1
 I isoleucine          2.5          9           2
 K lysine              3.6         13           1
 L leucine             9.4         34           2
 M methionine          1.1          4           1
 N asparagine          2.2          8           1
 P proline             9.9         36           3
 Q glutamine           5.2         19           2
 R arginine            6.9         25           3
 S serine              8.3         30           3
 T threonine           6.9         25           2
 V valine              3.9         14           1
 W tryptophan          2.2          8           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343764 
LOC100293297          0.993   PREDICTED: similar to hCG1785205 
LOC100288352          0.993   PREDICTED: similar to hCG1785205 
IRF4                  0.052   interferon regulatory factor 4 
IRF9                  0.050   interferon-stimulated transcription factor 3, gamma ...
IRF8                  0.044   interferon regulatory factor 8 
IRF7                  0.039   interferon regulatory factor 7 isoform d 
IRF7                  0.039   interferon regulatory factor 7 isoform a 
IRF7                  0.039   interferon regulatory factor 7 isoform b 
IRF6                  0.030   interferon regulatory factor 6 
IRF2                  0.030   interferon regulatory factor 2 
IRF5                  0.029   interferon regulatory factor 5 isoform a 
IRF5                  0.029   interferon regulatory factor 5 isoform c 
IRF5                  0.029   interferon regulatory factor 5 isoform c 
IRF5                  0.029   interferon regulatory factor 5 isoform c 
IRF5                  0.027   interferon regulatory factor 5 isoform b 
IRF5                  0.027   interferon regulatory factor 5 isoform d 
IRF5                  0.027   interferon regulatory factor 5 isoform b 
IRF1                  0.026   interferon regulatory factor 1 
IRF3                  0.022   interferon regulatory factor 3 
RAI1                  0.019   retinoic acid induced 1 
CABIN1                0.015   calcineurin binding protein 1 
TNRC18                0.012   trinucleotide repeat containing 18 
LOC100292408          0.012   PREDICTED: hypothetical protein 
PSMD3                 0.012   proteasome 26S non-ATPase subunit 3 
TFE3                  0.011   transcription factor E3 
PRCC                  0.011   papillary renal cell carcinoma translocation-associa...
ANKRD17               0.011   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.011   ankyrin repeat domain protein 17 isoform b 
PRCC                  0.011   papillary renal cell carcinoma translocation-associa...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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