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Search of human proteins with 4758090
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758090 NK2 transcription factor related, locus 5 [Homo
sapiens]
(324 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 661 0.0
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 242 4e-64
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 202 3e-52
gi|157426823 NK2 homeobox 4 [Homo sapiens] 144 1e-34
gi|31377777 NK2 homeobox 8 [Homo sapiens] 138 8e-33
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] 134 1e-31
gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi... 130 2e-30
gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens] 130 2e-30
gi|4502365 NK3 homeobox 2 [Homo sapiens] 107 2e-23
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 96 6e-20
gi|118582284 msh homeobox 1 [Homo sapiens] 87 3e-17
gi|19923352 NK3 homeobox 1 [Homo sapiens] 82 5e-16
gi|57528437 ladybird homeobox 2 [Homo sapiens] 82 5e-16
gi|157743259 H6 family homeobox 3 [Homo sapiens] 82 6e-16
gi|63054872 ladybird homeobox 1 [Homo sapiens] 82 6e-16
gi|27886557 msh homeobox 2 [Homo sapiens] 82 8e-16
gi|70608170 H6 family homeobox 2 [Homo sapiens] 80 2e-15
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 77 2e-14
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 77 3e-14
gi|4885185 distal-less homeobox 3 [Homo sapiens] 76 4e-14
gi|147901462 brain specific homeobox [Homo sapiens] 76 4e-14
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 76 5e-14
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 75 8e-14
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 75 1e-13
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 75 1e-13
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 75 1e-13
gi|24497513 homeobox A3 isoform a [Homo sapiens] 74 1e-13
gi|13562112 homeobox A3 isoform a [Homo sapiens] 74 1e-13
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 74 1e-13
gi|4758168 distal-less homeobox 2 [Homo sapiens] 74 2e-13
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 661 bits (1705), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE 60
MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE
Sbjct: 1 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPE 60
Query: 61 AAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAV 120
AAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAV
Sbjct: 61 AAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAV 120
Query: 121 ELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTST 180
ELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTST
Sbjct: 121 ELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTST 180
Query: 181 QVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPA 240
QVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPA
Sbjct: 181 QVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPA 240
Query: 241 YGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDL 300
YGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDL
Sbjct: 241 YGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANNNFVNFGVGDL 300
Query: 301 NAVQSPGIPQSNSGVSTLHGIRAW 324
NAVQSPGIPQSNSGVSTLHGIRAW
Sbjct: 301 NAVQSPGIPQSNSGVSTLHGIRAW 324
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 242 bits (617), Expect = 4e-64
Identities = 174/374 (46%), Positives = 205/374 (54%), Gaps = 61/374 (16%)
Query: 1 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYA--G 58
M PSP +T TPFSVKDILNLEQQ + A L A LE + CMLAA + ++ G
Sbjct: 2 MLPSP-VTSTPFSVKDILNLEQQHQHFHGA-HLQADLEHHFHSAPCMLAAAEGTQFSDGG 59
Query: 59 PE------AAAPGLPELRAELGRAPS---PAKCASAFPAAPAFYPRAYSDPDPAKDPRAE 109
E L L A G S P P+ + + R++
Sbjct: 60 EEDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQ 119
Query: 110 KKELCALQKAVEL--EKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPE 167
K C L+K++E + A+ +ERP+ R RRKPRVLFSQAQV+ELERRFKQQRYLSAPE
Sbjct: 120 KS--CQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPE 177
Query: 168 RDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDG 227
R+ LAS LKLTSTQVKIWFQNRRYKCKRQRQD++LEL PPPPP RR+AVPVLVRDG
Sbjct: 178 REHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPP--RRVAVPVLVRDG 235
Query: 228 KPCLGDSA-PYAPAYGVGLNPYGYNAYPAYPGYG---------------GAACSPGYSCT 271
KPC+ SA Y Y VG + Y YN++PAY GYG AA S Y C
Sbjct: 236 KPCVTPSAQAYGAPYSVGASAYSYNSFPAY-GYGNSAAAAAAAAAAAAAAAAYSSSYGC- 293
Query: 272 AAYPAG-----------PSPAQPATAAANNN-FVNFGVGDLNAVQSPGIPQ--------- 310
AYPAG + QPA +AA FVN V +L S G Q
Sbjct: 294 -AYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVN--VSNLGGFGSGGSAQPLHQGTAAG 350
Query: 311 SNSGVSTLHGIRAW 324
+ TL GIRAW
Sbjct: 351 AACAQGTLQGIRAW 364
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 202 bits (514), Expect = 3e-52
Identities = 117/205 (57%), Positives = 137/205 (66%), Gaps = 23/205 (11%)
Query: 123 EKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQV 182
+ +E+P+AR+RRKPRVLFSQAQV LERRFKQQRYLSAPER+ LAS L+LTSTQV
Sbjct: 35 DSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQV 94
Query: 183 KIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPAYG 242
KIWFQNRRYKCKRQRQD++LEL G P P RR+AVPVLVRDGKPCLG P APA+
Sbjct: 95 KIWFQNRRYKCKRQRQDKSLELAGHPLTP----RRVAVPVLVRDGKPCLG-PGPGAPAFP 149
Query: 243 VGLNPY--GYNAYPAYPGYGGAACSPGY-SCTAAYPAGPSPAQPATAAANNNFVNFGVGD 299
+PY + Y Y GY GA GY +C A P+GP+P P +A FG G
Sbjct: 150 ---SPYSAAVSPYSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPLASA------GFGHGG 200
Query: 300 LNAVQSPGIPQSNSGVSTLHGIRAW 324
NA PQ + +TL G+RAW
Sbjct: 201 QNAT-----PQGHL-AATLQGVRAW 219
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 144 bits (362), Expect = 1e-34
Identities = 73/117 (62%), Positives = 86/117 (73%), Gaps = 6/117 (5%)
Query: 129 NAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQN 188
+A A RRK RVLFSQAQVYELERRFKQQ+YLSAPER+ LAS++ LT TQVKIWFQN
Sbjct: 180 HAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQN 239
Query: 189 RRYKCKRQRQDQTLEL------VGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAP 239
RYK KRQ +D+ + +G PPPPPP RR+AVPVLV+DGKPC ++ P
Sbjct: 240 HRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTPTP 296
>gi|31377777 NK2 homeobox 8 [Homo sapiens]
Length = 239
Score = 138 bits (347), Expect = 8e-33
Identities = 100/249 (40%), Positives = 120/249 (48%), Gaps = 46/249 (18%)
Query: 59 PEAAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQK 118
PE A LP E RAP P CA+ + YP +
Sbjct: 18 PEQDAQHLPRREPE-PRAPQPDPCAAWLDSERGHYPSSDES------------------- 57
Query: 119 AVELEKTEADNAERPRAR---------RRRKPRVLFSQAQVYELERRFKQQRYLSAPERD 169
LE + D+++RP AR +R+K RVLFS+AQ ELERRF+QQRYLSAPER+
Sbjct: 58 --SLETSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPERE 115
Query: 170 QLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPP-----PPPPPARRIAVPVLV 224
QLAS+L+LT TQVKIWFQN RYK KR R E L P RR+ VPVLV
Sbjct: 116 QLASLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLV 175
Query: 225 RDGKPC----LGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSP 280
RDG+PC G+ A G P P YP +G PG S +PA
Sbjct: 176 RDGQPCGGGGGGEVGTAAAQEKCGAPPAAACPLPGYPAFG-----PG-SALGLFPAYQHL 229
Query: 281 AQPATAAAN 289
A PA + N
Sbjct: 230 ASPALVSWN 238
>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
Length = 273
Score = 134 bits (336), Expect = 1e-31
Identities = 94/231 (40%), Positives = 123/231 (53%), Gaps = 29/231 (12%)
Query: 8 TPTPFSVKDILNL---EQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPEA--- 61
T T FSVKDIL+L ++ S+A E E P +P AGP
Sbjct: 6 TKTGFSVKDILDLPDTNDEEGSVAEGPE-----EENEGP--------EPAKRAGPLGQGA 52
Query: 62 --AAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKA 119
A LP + +P A + + P +D ++ E A +
Sbjct: 53 LDAVQSLPLKNPFYDSSDNPYTRWLASTEGLQYSLHGLAAGAPPQDSSSKSPEPSADESP 112
Query: 120 VELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS 179
++T + A ++RK RVLFS+AQ YELERRF+QQRYLSAPER+ LAS+++LT
Sbjct: 113 DNDKETPGGGGD---AGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTP 169
Query: 180 TQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPC 230
TQVKIWFQN RYK KR R ++ +E+ LP P RR+AVPVLVRDGKPC
Sbjct: 170 TQVKIWFQNHRYKMKRARAEKGMEVTPLPSP-----RRVAVPVLVRDGKPC 215
>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
sapiens]
Length = 401
Score = 130 bits (326), Expect = 2e-30
Identities = 126/377 (33%), Positives = 165/377 (43%), Gaps = 59/377 (15%)
Query: 1 MFPSPALTPTPFSVKDILN-LEQQQRSLAAAG-----ELSARLEATLAPSSCMLAAFKPE 54
M SP T TPFSV DIL+ LE+ + + G L+A + AP + +
Sbjct: 31 MSMSPKHT-TPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVG 89
Query: 55 AYAGPEAA----APGLPELR------------AELGRAPSPAKCASAFPAAPAFYPRAYS 98
+ AA A G+P+L + P + P +Y +
Sbjct: 90 HHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYG---A 146
Query: 99 DPDPAKDP------RAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYE 152
+PDP A + + L + A P A RR++ RVLFSQAQVYE
Sbjct: 147 NPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKR-RVLFSQAQVYE 205
Query: 153 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL-------- 204
LERRFKQQ+YLSAPER+ LAS++ LT TQVKIWFQN RYK KRQ +D+ +
Sbjct: 206 LERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGG 265
Query: 205 ------VGLP---PPPPPPARRIAVPVLVRDGKPC-LGDSAPYAPA-YGVGLNPYGYNAY 253
G P RR+AVPVLV+DGKPC G AP A + G + A
Sbjct: 266 GGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQ 325
Query: 254 PAYPGYGGAACSPGYSCTAAYP------AGPSPAQPATAAANNNFVNFGVGDLNAVQSPG 307
A + G + A+P AG SP A AA+ + V L+ + S G
Sbjct: 326 AAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSP-DLAHHAASPAALQGQVSSLSHLNSSG 384
Query: 308 IPQSNSGVSTLHGIRAW 324
STL R W
Sbjct: 385 SDYGTMSCSTLLYGRTW 401
>gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]
Length = 371
Score = 130 bits (326), Expect = 2e-30
Identities = 126/377 (33%), Positives = 165/377 (43%), Gaps = 59/377 (15%)
Query: 1 MFPSPALTPTPFSVKDILN-LEQQQRSLAAAG-----ELSARLEATLAPSSCMLAAFKPE 54
M SP T TPFSV DIL+ LE+ + + G L+A + AP + +
Sbjct: 1 MSMSPKHT-TPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVG 59
Query: 55 AYAGPEAA----APGLPELR------------AELGRAPSPAKCASAFPAAPAFYPRAYS 98
+ AA A G+P+L + P + P +Y +
Sbjct: 60 HHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYG---A 116
Query: 99 DPDPAKDP------RAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYE 152
+PDP A + + L + A P A RR++ RVLFSQAQVYE
Sbjct: 117 NPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKR-RVLFSQAQVYE 175
Query: 153 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL-------- 204
LERRFKQQ+YLSAPER+ LAS++ LT TQVKIWFQN RYK KRQ +D+ +
Sbjct: 176 LERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGG 235
Query: 205 ------VGLP---PPPPPPARRIAVPVLVRDGKPC-LGDSAPYAPA-YGVGLNPYGYNAY 253
G P RR+AVPVLV+DGKPC G AP A + G + A
Sbjct: 236 GGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQ 295
Query: 254 PAYPGYGGAACSPGYSCTAAYP------AGPSPAQPATAAANNNFVNFGVGDLNAVQSPG 307
A + G + A+P AG SP A AA+ + V L+ + S G
Sbjct: 296 AAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSP-DLAHHAASPAALQGQVSSLSHLNSSG 354
Query: 308 IPQSNSGVSTLHGIRAW 324
STL R W
Sbjct: 355 SDYGTMSCSTLLYGRTW 371
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 107 bits (266), Expect = 2e-23
Identities = 64/141 (45%), Positives = 80/141 (56%), Gaps = 8/141 (5%)
Query: 127 ADNAERPRAR--RRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKI 184
A+ E P A R+++ R FS AQV+ELERRF QRYLS PER LA+ LKLT TQVKI
Sbjct: 193 AEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKI 252
Query: 185 WFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPAYGVG 244
WFQNRRYK KR++ L P A+++AV VLVRD + P +
Sbjct: 253 WFQNRRYKTKRRQMAADL------LASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLP 306
Query: 245 LNPYGYNAYPAYPGYGGAACS 265
L P Y Y PG+ + C+
Sbjct: 307 LQPSYYYPYYCLPGWALSTCA 327
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 95.5 bits (236), Expect = 6e-20
Identities = 92/280 (32%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 20 LEQQQRSLAAAGELS-ARLEATLAPSSCMLAAFKPEAYAGPEA-----AAPGLPELRAEL 73
L+++++ LA G AR A L P + L P P A AA P
Sbjct: 65 LQRRRQLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGY 124
Query: 74 GRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAVELEKTE--ADNAE 131
G SP P RA P A ++E L TE ++ AE
Sbjct: 125 GGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAE 184
Query: 132 RPRAR------------RRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS 179
P A R++K R +FS++QV++LE F +RYLS+ ER LA+ L+LT
Sbjct: 185 VPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTE 244
Query: 180 TQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAP 239
TQVKIWFQNRR K KRQ EL PP R + VPVL + P + P A
Sbjct: 245 TQVKIWFQNRRNKWKRQ---LAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPA- 300
Query: 240 AYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPS 279
L P P G+ GA P AA+PA S
Sbjct: 301 TLPFPLAPAAPAPPPPLLGFSGALAYP----LAAFPAAAS 336
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 86.7 bits (213), Expect = 3e-17
Identities = 81/271 (29%), Positives = 119/271 (43%), Gaps = 30/271 (11%)
Query: 5 PALTPT--PFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPEAA 62
P ++P+ PFSV+ ++ ++ + +A S ++A A S P + P+A
Sbjct: 52 PKVSPSLLPFSVEALMADHRKPGAKESALAPSEGVQA--AGGSAQPLGVPPGSLGAPDAP 109
Query: 63 APGLPELRAELG---RAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKA 119
+ P +G + P A + P P P S R C L+K
Sbjct: 110 SSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKH 169
Query: 120 VELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS 179
+ RKPR F+ AQ+ LER+F+Q++YLS ER + +S L LT
Sbjct: 170 ----------------KTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTE 213
Query: 180 TQVKIWFQNRRYKCKRQRQDQTLEL-VGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYA 238
TQVKIWFQNRR K KR ++ + +L + P PP A ++ P+ G P +A A
Sbjct: 214 TQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPL----GGPAAVAAAAGA 269
Query: 239 PAYGVGLNPYGYNAYPAYPGYGGAACSPGYS 269
YG P+ A P P G GYS
Sbjct: 270 SLYGAS-GPFQRAALPVAP-VGLYTAHVGYS 298
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 82.4 bits (202), Expect = 5e-16
Identities = 40/65 (61%), Positives = 47/65 (72%)
Query: 138 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQR 197
+++ R FS QV ELER+F Q+YLSAPER LA LKLT TQVKIWFQNRRYK KR++
Sbjct: 124 QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 183
Query: 198 QDQTL 202
L
Sbjct: 184 LSSEL 188
>gi|57528437 ladybird homeobox 2 [Homo sapiens]
Length = 194
Score = 82.4 bits (202), Expect = 5e-16
Identities = 56/156 (35%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Query: 91 AFYPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAER----------PRARRRRK 140
+F P A S P R +++LC E ++A +R P R+RRK
Sbjct: 25 SFPPLAASRPARPGGWRWARRDLCKTASRAE-NNSQACRPQRRAGPDALGPGPFGRKRRK 83
Query: 141 PRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQ 200
R F+ QV ELERRF Q+YL+ ERD LA+ L L + QV WFQNRR K KR ++
Sbjct: 84 SRTAFTAQQVLELERRFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEM 143
Query: 201 TLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAP 236
++ L P +A+P D CLG + P
Sbjct: 144 RADVASLRALSPEVLCSLALPEGAPDPGLCLGPAGP 179
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 82.0 bits (201), Expect = 6e-16
Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 124 KTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVK 183
K A++ E+ A R++K R +FS++QV++LE F +RYLS+ ER LA+ L LT TQVK
Sbjct: 213 KKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVK 272
Query: 184 IWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPA 240
IWFQNRR K KRQ EL R + VP+L + G +A A A
Sbjct: 273 IWFQNRRNKWKRQ---LAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGA 326
>gi|63054872 ladybird homeobox 1 [Homo sapiens]
Length = 281
Score = 82.0 bits (201), Expect = 6e-16
Identities = 84/278 (30%), Positives = 114/278 (41%), Gaps = 47/278 (16%)
Query: 10 TPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPEAAAPGLPEL 69
TPFS++DILN +RS + G +A L A A + A GLP
Sbjct: 34 TPFSIEDILNKPSVRRSYSLCG--AAHLLA-----------------AADKHAQGGLPLA 74
Query: 70 RAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADN 129
L SP CA A+ F + E+ LQ A E
Sbjct: 75 GRALLSQTSPL-CALEELASKTF----------------KGLEVSVLQ-AAEGRDGMTIF 116
Query: 130 AERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNR 189
+R ++RRK R F+ Q+YELE+RF Q+YLS +RDQ+A L LT+ QV WFQNR
Sbjct: 117 GQRQTPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNR 176
Query: 190 RYKCKRQRQDQTLELVGLPPPPPPPARRI-AVPVLVRDGKPCLGDSAPYAPAYGVGLNPY 248
R K KR ++ ++ P I A+ L ++ + G A +P
Sbjct: 177 RAKLKRDLEEMKADVESAKKLGPSGQMDIVALAELEQNSEATAGGGGGCGRAKSRPGSPV 236
Query: 249 GYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATA 286
P PG G S PA P QPA++
Sbjct: 237 LPPGAPKAPGAGALQLS---------PASPLTDQPASS 265
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 81.6 bits (200), Expect = 8e-16
Identities = 75/250 (30%), Positives = 105/250 (42%), Gaps = 38/250 (15%)
Query: 11 PFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPEAAAPGLPELR 70
PFSV+ +++ ++ + + SA ATL P + EA +PG
Sbjct: 46 PFSVEALMSDKKPPKEASPLPAESASAGATLRPLLL-------SGHGAREAHSPGPLVKP 98
Query: 71 AELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNA 130
E S S AA P YS P PR C L+K
Sbjct: 99 FETASVKSEN---SEDGAAWMQEPGRYSPP-----PRHMSPTTCTLRKH----------- 139
Query: 131 ERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRR 190
+ RKPR F+ +Q+ LER+F+Q++YLS ER + +S L LT TQVKIWFQNRR
Sbjct: 140 -----KTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRR 194
Query: 191 YKCKRQRQDQTLELVGLPPPPPPPARRIAVPV-LVRDGKPCLGDSAPY------APAYGV 243
K KR ++ + +L P P + + P+ G S P+ P G+
Sbjct: 195 AKAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASYPFHRPVLPIPPVGL 254
Query: 244 GLNPYGYNAY 253
P GY Y
Sbjct: 255 YATPVGYGMY 264
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 80.5 bits (197), Expect = 2e-15
Identities = 56/141 (39%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 123 EKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQV 182
E+ AER ++K R +FS++QVY+LE F +RYLS+ ER LAS L+LT TQV
Sbjct: 134 ERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQV 193
Query: 183 KIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGK----PCLGDSAPYA 238
K WFQNRR K KRQ + EL +++P++ RD P A A
Sbjct: 194 KTWFQNRRNKWKRQ---LSAELEAANMAHASAQTLVSMPLVFRDSSLLRVPVPRSLAFPA 250
Query: 239 PAYGVGLNPYGYNAYPAYPGY 259
P Y G N +A P Y Y
Sbjct: 251 PLYYPGSN---LSALPLYNLY 268
>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
Length = 240
Score = 77.4 bits (189), Expect = 2e-14
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 41 LAPSSCMLAAFKPEAYAGPEAAAPGLPELR--AELGRAP--SPAKCASAFPAAPAFYPRA 96
LAP + AA+ P + AA+P L R L P PA ++ + P A
Sbjct: 21 LAPVPSVAAAY-PLGLSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQ--PAA 77
Query: 97 YSDP--DPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELE 154
S P PA+ P+ EL A + L ++ + A++ RKPR ++S Q+ L
Sbjct: 78 LSQPLCGPAEHPQ----ELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLN 133
Query: 155 RRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKR 195
+RF+ +YL+ PER QLA+ L LT TQVKIWFQN+R K K+
Sbjct: 134 QRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKK 174
>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
Length = 284
Score = 76.6 bits (187), Expect = 3e-14
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 13/91 (14%)
Query: 137 RRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQ 196
+R+KPR FS++QV ELERRF +Q+YL++ ER LA L++T QVK WFQNRR K +RQ
Sbjct: 156 KRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 215
Query: 197 RQDQT-------------LELVGLPPPPPPP 214
++ L+ LP P PP
Sbjct: 216 TAEEREAERHRAGRLLLHLQQDALPRPLRPP 246
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 76.3 bits (186), Expect = 4e-14
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 21/160 (13%)
Query: 100 PDPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQ 159
P PA+DP + K+E A + V + ++ RKPR ++S Q+ L+RRF++
Sbjct: 102 PLPAQDPVSVKEEPEAEVRMVN-----------GKPKKVRKPRTIYSSYQLAALQRRFQK 150
Query: 160 QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIA 219
+YL+ PER +LA+ L LT TQVKIWFQNRR K K+ ++ + L P A
Sbjct: 151 AQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACN-- 208
Query: 220 VPVLVRDGKPCLGDSAPY---APAYGVGLNPYGYNAYPAY 256
P L D++ + APA P Y+A P+Y
Sbjct: 209 -----SPPSPALWDTSSHSTPAPARSQLPPPLPYSASPSY 243
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 76.3 bits (186), Expect = 4e-14
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 137 RRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQ 196
RRRK R +FS +Q+ LE+RF+ QRYLS PER +LA+ L L+ TQVK WFQNRR K K+Q
Sbjct: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 75.9 bits (185), Expect = 5e-14
Identities = 64/229 (27%), Positives = 93/229 (40%), Gaps = 22/229 (9%)
Query: 58 GPEAAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQ 117
G A P PE +E P+PA PA PR Y +P E + L
Sbjct: 68 GARPACPKAPEEGSEPSPPPAPA------PAPEYEAPRPYCPKEPG-----EARPSPGLP 116
Query: 118 KAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKL 177
+ + E+P+ + RR R F+ Q++ELER F++ Y R++LA + L
Sbjct: 117 VGPATGEAKLSEEEQPKKKHRRN-RTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNL 175
Query: 178 TSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPP------PPPPARRIAVPVLVRDGKPCL 231
+V++WFQNRR K +RQ + + + P PP A + G
Sbjct: 176 PEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPA 235
Query: 232 GDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSP 280
G + P G L G A + PG+G P S A+Y P P
Sbjct: 236 GGALPLESWLGPPLPGGGATALQSLPGFG----PPAQSLPASYTPPPPP 280
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 75.1 bits (183), Expect = 8e-14
Identities = 66/210 (31%), Positives = 91/210 (43%), Gaps = 37/210 (17%)
Query: 59 PEAAAPGLPELRAELGRAPSPAKCASAFPAAPAF----YPRAYSDPDPAKDPRAEKKELC 114
P A P + L L PA+ A P A F P +P+ + P K
Sbjct: 72 PLADDPAVAHLHHHL-----PAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKST- 125
Query: 115 ALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASV 174
KA + A A ++ R +++AQ+ ELE+ F +Y+S P R +LA +
Sbjct: 126 ---KAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVM 182
Query: 175 LKLTSTQVKIWFQNRRYKCKRQ-------------------RQDQTL----ELVGLPPPP 211
L LT +KIWFQNRR K K++ QD + EL+ LPPPP
Sbjct: 183 LNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPP 242
Query: 212 PP-PARRIAVPVLVRDGKPCLGDSAPYAPA 240
PP A A PV R+G+ G SA P+
Sbjct: 243 PPGGAVPPAAPVAAREGRLPPGLSASPQPS 272
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 74.7 bits (182), Expect = 1e-13
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 14/118 (11%)
Query: 134 RARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKC 193
+ ++ RKPR ++S Q+ L RRF+Q +YL+ PER +LA+ L LT TQVKIWFQN+R K
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183
Query: 194 KRQRQDQTLELVG----------LPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPAY 241
K+ + L G PP PP GK G++ Y P+Y
Sbjct: 184 KKLMKQGGAALEGSALANGRALSAGSPPVPPGWN----PNSSSGKGSGGNAGSYIPSY 237
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 74.7 bits (182), Expect = 1e-13
Identities = 75/238 (31%), Positives = 98/238 (41%), Gaps = 28/238 (11%)
Query: 50 AFKPEAYAGPEA--AAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDP- 106
AF+P A P A P LR R P P P P A P A P
Sbjct: 12 AFRPRG-ATPTCTPAQPSWARLRPT--RPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPG 68
Query: 107 -RAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSA 165
+ A + ++T +D+ ++ + R+ R F+ Q+ LE +FK RYLS
Sbjct: 69 GAGTTPQGTATAAKPKRKRTGSDS----KSGKPRRARTAFTYEQLVALENKFKATRYLSV 124
Query: 166 PERDQLASVLKLTSTQVKIWFQNRRYKCKRQR--QDQTLELVGLPPPPPPPARRIAVPVL 223
ER LA L LT TQVKIWFQNRR K K+Q D + G P P +P
Sbjct: 125 CERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLP-- 182
Query: 224 VRDGKPCLGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPA 281
G +P +P+ +G P G + YP +G G C A P SPA
Sbjct: 183 --------GGLSPLSPSPPMGA-PLGMHGPAGYPAHGPG----GLVCAAQLPFLSSPA 227
>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
Length = 291
Score = 74.7 bits (182), Expect = 1e-13
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 137 RRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQ 196
+R+KPR FS+ Q+ ELE+RF +Q+YL++ ER LA LK+T QVK WFQNRR K +RQ
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
Query: 197 RQDQ 200
++
Sbjct: 225 TAEE 228
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 74.3 bits (181), Expect = 1e-13
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 19/188 (10%)
Query: 30 AGELSARLEATL-APSSCMLAAFKPEAYAGPEAAAPGLPELRAELGRAPSPAKCASAFPA 88
A ELS TL AP S + +P + P AAP P+ + P+P A P+
Sbjct: 64 AHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPS 123
Query: 89 APAFYPRAYSDPDPAK--------DPRAEKKELCALQKAVELEKTEADNAER-------- 132
+ + A ++P PA P K+ ++++ + K + ++
Sbjct: 124 SASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDK 183
Query: 133 --PRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRR 190
P ++ R ++ AQ+ ELE+ F RYL P R ++A++L LT Q+KIWFQNRR
Sbjct: 184 SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 243
Query: 191 YKCKRQRQ 198
K K+ ++
Sbjct: 244 MKYKKDQK 251
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 74.3 bits (181), Expect = 1e-13
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 19/188 (10%)
Query: 30 AGELSARLEATL-APSSCMLAAFKPEAYAGPEAAAPGLPELRAELGRAPSPAKCASAFPA 88
A ELS TL AP S + +P + P AAP P+ + P+P A P+
Sbjct: 64 AHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPS 123
Query: 89 APAFYPRAYSDPDPAK--------DPRAEKKELCALQKAVELEKTEADNAER-------- 132
+ + A ++P PA P K+ ++++ + K + ++
Sbjct: 124 SASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDK 183
Query: 133 --PRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRR 190
P ++ R ++ AQ+ ELE+ F RYL P R ++A++L LT Q+KIWFQNRR
Sbjct: 184 SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 243
Query: 191 YKCKRQRQ 198
K K+ ++
Sbjct: 244 MKYKKDQK 251
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 74.3 bits (181), Expect = 1e-13
Identities = 67/215 (31%), Positives = 91/215 (42%), Gaps = 23/215 (10%)
Query: 71 AELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDP--RAEKKELCALQKAVELEKTEAD 128
AE +P +A P P A P A P + A + ++T +D
Sbjct: 194 AETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSD 253
Query: 129 NAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQN 188
+ ++ + R+ R F+ Q+ LE +FK RYLS ER LA L LT TQVKIWFQN
Sbjct: 254 S----KSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQN 309
Query: 189 RRYKCKRQR--QDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGLN 246
RR K K+Q D + G P P +P G +P +P+ +G
Sbjct: 310 RRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLP----------GGLSPLSPSPPMGA- 358
Query: 247 PYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPA 281
P G + YP +G G C A P SPA
Sbjct: 359 PLGMHGPAGYPAHGPG----GLVCAAQLPFLSSPA 389
Score = 31.2 bits (69), Expect = 1.3
Identities = 36/113 (31%), Positives = 44/113 (38%), Gaps = 19/113 (16%)
Query: 3 PSPALTPTPFSVKDILN---LEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGP 59
P+ L PT FSV DIL+ ++R G +AP++C A P P
Sbjct: 36 PAAPLRPTSFSVLDILDPNKFNSRRRRCVLLG--------PVAPAACAPCASAP---CAP 84
Query: 60 EAAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKE 112
AA G P EL R A AA A P A DP K AE +
Sbjct: 85 APAASGRPPRAEELERRALAG--AGGVGAAGAEPPNA---GDPFKAGEAETND 132
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 73.6 bits (179), Expect = 2e-13
Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 29/159 (18%)
Query: 134 RARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKC 193
+ ++ RKPR ++S Q+ L+RRF++ +YL+ PER +LA+ L LT TQVKIWFQNRR K
Sbjct: 148 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKF 207
Query: 194 KRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGD--SAPYAPAYGVGLNPYGYN 251
K+ + + P P PC SAP + +GV
Sbjct: 208 KKMWKSGEIPSEQHPGASASP--------------PCASPPVSAPASWDFGV-------- 245
Query: 252 AYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAANN 290
P GG PG + A +G SP+ A+A N
Sbjct: 246 --PQRMAGGG---GPGSGGSGAGSSGSSPSSAASAFLGN 279
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,210,387
Number of Sequences: 37866
Number of extensions: 960420
Number of successful extensions: 10990
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 366
Number of HSP's that attempted gapping in prelim test: 8605
Number of HSP's gapped (non-prelim): 2283
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.