Guide to the Human Genome
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Name: TLX3 Sequence: fasta or formatted (291aa) NCBI GI: 50355978
Description:

T-cell leukemia homeobox 3

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         33           4
 C cysteine            0.7          2           1
 D aspartate           3.8         11           1
 E glutamate           4.5         13           2
 F phenylalanine       4.1         12           1
 G glycine             5.5         16           2
 H histidine           2.4          7           1
 I isoleucine          2.4          7           1
 K lysine              4.1         12           2
 L leucine             8.9         26           1
 M methionine          1.7          5           1
 N asparagine          2.7          8           1
 P proline            12.0         35           3
 Q glutamine           5.8         17           2
 R arginine            7.9         23           2
 S serine              9.6         28           2
 T threonine           4.8         14           1
 V valine              4.5         13           1
 W tryptophan          1.4          4           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell leukemia homeobox 3 
TLX1                  0.548   T-cell leukemia homeobox 1 
TLX2                  0.514   T-cell leukemia homeobox 2 
NKX6-1                0.132   NK6 transcription factor related, locus 1 
HMX2                  0.116   H6 family homeobox 2 
HHEX                  0.107   hematopoietically expressed homeobox 
HMX3                  0.107   H6 family homeobox 3 
HMX1                  0.106   homeo box (H6 family) 1 
HOXD3                 0.104   homeobox D3 
EMX2                  0.102   empty spiracles homeobox 2 
HOXB2                 0.102   homeobox B2 
BARHL1                0.100   BarH-like homeobox 1 
LBX1                  0.100   ladybird homeobox 1 
PDX1                  0.100   pancreatic and duodenal homeobox 1 
MSX1                  0.099   msh homeobox 1 
BARHL2                0.099   BarH-like homeobox 2 
NKX6-2                0.097   NK6 transcription factor related, locus 2 
EMX1                  0.095   empty spiracles homolog 1 
HOXA3                 0.095   homeobox A3 isoform a 
HOXA3                 0.095   homeobox A3 isoform a 
NKX2-3                0.093   NK2 transcription factor related, locus 3 
MNX1                  0.093   homeo box HB9 
NKX3-2                0.093   NK3 homeobox 2 
NKX3-1                0.092   NK3 homeobox 1 
HOXD4                 0.092   homeobox D4 
MSX2                  0.090   msh homeobox 2 
CDX1                  0.090   caudal type homeobox 1 
GBX2                  0.090   gastrulation brain homeo box 2 
HOXA2                 0.088   homeobox A2 
NKX2-5                0.088   NK2 transcription factor related, locus 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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