Search of human proteins with 47578099

Search of human proteins with 47578099

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo
sapiens]
         (590 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens]    1193   0.0  
gi|47578101 selenoprotein N, 1 isoform 2 precursor [Homo sapiens]    1106   0.0  
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s...    44   5e-04
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s...    44   5e-04
gi|205830426 solute carrier family 39 (zinc transporter), member...    40   0.005
gi|193794843 BEN domain containing 2 [Homo sapiens]                    40   0.006
gi|10140847 homeobox A2 [Homo sapiens]                                 39   0.010
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ...    39   0.017
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ...    39   0.017
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ...    39   0.017
gi|238908517 colony stimulating factor 2 receptor alpha chain is...    39   0.017
gi|149588643 zinc finger protein 283 [Homo sapiens]                    39   0.017
gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo sa...    38   0.023
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]      38   0.030
gi|40789270 zinc finger protein 573 [Homo sapiens]                     37   0.039
gi|4557265 beta-1-adrenergic receptor [Homo sapiens]                   36   0.087
gi|168693643 decay accelerating factor for complement isoform 2 ...    35   0.15 
gi|38679957 active breakpoint cluster region-related  protein is...    35   0.15 
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]            35   0.19 
gi|118600977 C3 and PZP-like, alpha-2-macroglobulin domain conta...    35   0.25 
gi|5453936 POU class 3 homeobox 3 [Homo sapiens]                       35   0.25 
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]            34   0.33 
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ...    34   0.33 
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    33   0.56 
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    33   0.56 
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    33   0.56 
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    33   0.56 
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom...    33   0.56 
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo...    33   0.56 
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo...    33   0.56 

>gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens]
          Length = 590

 Score = 1193 bits (3086), Expect = 0.0
 Identities = 590/590 (100%), Positives = 590/590 (100%)

Query: 1   MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60
           MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR
Sbjct: 1   MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60

Query: 61  QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQP 120
           QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQP
Sbjct: 61  QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQP 120

Query: 121 QLPWLNUSSCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGV 180
           QLPWLN SSCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGV
Sbjct: 121 QLPWLNUSSCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGV 180

Query: 181 SRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRF 240
           SRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRF
Sbjct: 181 SRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRF 240

Query: 241 YPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSE 300
           YPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSE
Sbjct: 241 YPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSE 300

Query: 301 PPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIG 360
           PPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIG
Sbjct: 301 PPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIG 360

Query: 361 YIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEV 420
           YIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEV
Sbjct: 361 YIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEV 420

Query: 421 AMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESSPILT 480
           AMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSC GSGRTLRETVLESSPILT
Sbjct: 421 AMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESSPILT 480

Query: 481 LLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINA 540
           LLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINA
Sbjct: 481 LLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINA 540

Query: 541 NYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 590
           NYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP
Sbjct: 541 NYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 590


>gi|47578101 selenoprotein N, 1 isoform 2 precursor [Homo sapiens]
          Length = 556

 Score = 1106 bits (2860), Expect = 0.0
 Identities = 556/590 (94%), Positives = 556/590 (94%), Gaps = 34/590 (5%)

Query: 1   MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60
           MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR
Sbjct: 1   MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60

Query: 61  QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQP 120
           QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGS                  
Sbjct: 61  QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGS------------------ 102

Query: 121 QLPWLNUSSCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGV 180
                           TPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGV
Sbjct: 103 ----------------TPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGV 146

Query: 181 SRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRF 240
           SRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRF
Sbjct: 147 SRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRF 206

Query: 241 YPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSE 300
           YPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSE
Sbjct: 207 YPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSE 266

Query: 301 PPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIG 360
           PPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIG
Sbjct: 267 PPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIG 326

Query: 361 YIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEV 420
           YIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEV
Sbjct: 327 YIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEV 386

Query: 421 AMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESSPILT 480
           AMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSC GSGRTLRETVLESSPILT
Sbjct: 387 AMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESSPILT 446

Query: 481 LLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINA 540
           LLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINA
Sbjct: 447 LLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINA 506

Query: 541 NYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 590
           NYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP
Sbjct: 507 NYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 556


>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
           sapiens]
          Length = 714

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 25/51 (49%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 75  LFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWL 125
           L+ S    GD  I    F P    L GS S TQ GVQWC+H SLQP+ P L
Sbjct: 444 LYISTSPCGDARI----FSPHEPILEGSRSYTQAGVQWCNHGSLQPRPPGL 490


>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
           sapiens]
          Length = 741

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 25/51 (49%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 75  LFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWL 125
           L+ S    GD  I    F P    L GS S TQ GVQWC+H SLQP+ P L
Sbjct: 444 LYISTSPCGDARI----FSPHEPILEGSRSYTQAGVQWCNHGSLQPRPPGL 490


>gi|205830426 solute carrier family 39 (zinc transporter), member 14
           isoform c [Homo sapiens]
          Length = 481

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 20/31 (64%), Positives = 20/31 (64%)

Query: 103 CSVTQTGVQWCSHSSLQPQLPWLNUSSCLSL 133
           CSV Q GVQWC  SSLQP    L   SCLSL
Sbjct: 448 CSVAQAGVQWCHLSSLQPLPLGLKRLSCLSL 478


>gi|193794843 BEN domain containing 2 [Homo sapiens]
          Length = 799

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 25/51 (49%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 101 GSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSLLRSTPAASCEEEELPPDP 151
           GS SVTQ GVQW  HSSLQPQ   L     LSL      +S ++   PP P
Sbjct: 80  GSGSVTQAGVQWHDHSSLQPQPLGLKQFFHLSL-----PSSWDDRRTPPCP 125


>gi|10140847 homeobox A2 [Homo sapiens]
          Length = 376

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 2   GRARP---GQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVR-----VCARHA 53
           GR +P   G RG P P  A QPP  P  + +  A   ALL AAAAAA        C  H 
Sbjct: 71  GRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHK 130

Query: 54  EA 55
           E+
Sbjct: 131 ES 132


>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 25/52 (48%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 102 SCSVTQTGVQWCSH-SSLQPQLPWLNUSSCLSLLRSTPAASCEEEELPPDPS 152
           SCSVTQ GVQWC    SLQP  P     SCLSL       S +    PP P+
Sbjct: 129 SCSVTQAGVQWCDDLGSLQPPPPGF---SCLSL-----PGSWDYRHPPPHPA 172


>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 25/52 (48%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 102 SCSVTQTGVQWCSH-SSLQPQLPWLNUSSCLSLLRSTPAASCEEEELPPDPS 152
           SCSVTQ GVQWC    SLQP  P     SCLSL       S +    PP P+
Sbjct: 129 SCSVTQAGVQWCDDLGSLQPPPPGF---SCLSL-----PGSWDYRHPPPHPA 172


>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 25/52 (48%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 102 SCSVTQTGVQWCSH-SSLQPQLPWLNUSSCLSLLRSTPAASCEEEELPPDPS 152
           SCSVTQ GVQWC    SLQP  P     SCLSL       S +    PP P+
Sbjct: 129 SCSVTQAGVQWCDDLGSLQPPPPGF---SCLSL-----PGSWDYRHPPPHPA 172


>gi|238908517 colony stimulating factor 2 receptor alpha chain
           isoform f precursor [Homo sapiens]
          Length = 434

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 20/33 (60%), Positives = 21/33 (63%)

Query: 101 GSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSL 133
           GS SVTQ GVQW +  SLQP  P L   SCL L
Sbjct: 316 GSHSVTQAGVQWHNLGSLQPPSPRLKRFSCLRL 348


>gi|149588643 zinc finger protein 283 [Homo sapiens]
          Length = 679

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 20/35 (57%), Positives = 20/35 (57%)

Query: 102 SCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSLLRS 136
           S SV Q GVQWC   SLQ   P     SCLSLL S
Sbjct: 3   SRSVAQAGVQWCDLGSLQAPPPGFTLFSCLSLLSS 37


>gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo
           sapiens]
          Length = 322

 Score = 38.1 bits (87), Expect = 0.023
 Identities = 38/107 (35%), Positives = 50/107 (46%), Gaps = 10/107 (9%)

Query: 30  SLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGLFLFSSLDTDGDMYISP 89
           +L LL  L  + A AAV    R A      R+  A   + T    +     ++GD     
Sbjct: 205 NLGLLFGLSESDAKAAVSTNCRAALLHGETRKT-AFGIIST----VKKPRPSEGD----- 254

Query: 90  EEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSLLRS 136
           E+  P ++K   S SVTQ GVQW +  SLQP    L  SS LSL R+
Sbjct: 255 EDCLPASKKAKWSHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLPRT 301


>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
          Length = 825

 Score = 37.7 bits (86), Expect = 0.030
 Identities = 19/32 (59%), Positives = 19/32 (59%)

Query: 102 SCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSL 133
           S SV Q GVQWC  SSLQP        SCLSL
Sbjct: 778 SLSVAQPGVQWCDISSLQPLTSRFQQFSCLSL 809


>gi|40789270 zinc finger protein 573 [Homo sapiens]
          Length = 607

 Score = 37.4 bits (85), Expect = 0.039
 Identities = 19/32 (59%), Positives = 19/32 (59%)

Query: 102 SCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSL 133
           SCSV Q GVQW   SSLQP  P     SC SL
Sbjct: 3   SCSVAQAGVQWPDLSSLQPPPPRFKQFSCHSL 34


>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
          Length = 477

 Score = 36.2 bits (82), Expect = 0.087
 Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 13/68 (19%)

Query: 7   GQRGPPSPGPA-----AQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61
           G   PPSP P+     A PP PPR  A +        A A  A  R   R      A R+
Sbjct: 268 GPARPPSPSPSPVPAPAPPPGPPRPAAAA--------ATAPLANGRAGKRRPSRLVALRE 319

Query: 62  ELALKTLG 69
           + ALKTLG
Sbjct: 320 QKALKTLG 327


>gi|168693643 decay accelerating factor for complement isoform 2
           precursor [Homo sapiens]
          Length = 440

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 99  LTGSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSL 133
           L+GS  VTQ G++WC  SSLQ + P    S   SL
Sbjct: 359 LSGSRPVTQAGMRWCDRSSLQSRTPGFKRSFHFSL 393


>gi|38679957 active breakpoint cluster region-related  protein
           isoform a [Homo sapiens]
          Length = 859

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 59/262 (22%), Positives = 99/262 (37%), Gaps = 49/262 (18%)

Query: 114 SHSSLQPQLPWLNUS-SCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTK 172
           SH  L P+L W++   S  S           EE+  P    ET+        + P+   +
Sbjct: 5   SHRGL-PRLSWIDTLYSNFSYGTDEYDGEGNEEQKGPPEGSETMPYIDESPTMSPQLSAR 63

Query: 173 SKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFT 232
           S+ G  GVS     GL                        PG E G+    +     + +
Sbjct: 64  SQGGGDGVSPTPPEGL-----------------------APGVEAGKG---LEMRKLVLS 97

Query: 233 GYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTV--MF 290
           G+L++          +E+ I++L ++  P   +K        V  +  I   +Y +  ++
Sbjct: 98  GFLAS----------EEIYINQLEALLLPMKPLKATATTSQPVLTIQQIETIFYKIQDIY 147

Query: 291 RIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGAS 350
            IH EF  +  P    W S  Q T   +  K A+ +  ++ FV N++   V +E     S
Sbjct: 148 EIHKEFYDNLCPKVQQWDS--QVTMGHLFQKLASQLGVYKAFVDNYK---VALETAEKCS 202

Query: 351 ESSNMEVDIGYIPQMELEATGP 372
           +S+N    I      EL+  GP
Sbjct: 203 QSNNQFQKI----SEELKVKGP 220


>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 251

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 1   MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVR 47
           MGR RPG+  PP+P     PPAPP  R   L+ L    AA  A   R
Sbjct: 114 MGRGRPGKGPPPNPS-RRLPPAPPGGRRTWLSALATGPAAGGAGRRR 159


>gi|118600977 C3 and PZP-like, alpha-2-macroglobulin domain
          containing 8 [Homo sapiens]
          Length = 1932

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 23/41 (56%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 2  GRARPGQRGP---PSPGPAAQP-PAPPRRRARSLALLGALL 38
          G AR    GP   PSPGPA  P  APPR R  S ALL  LL
Sbjct: 17 GGARTAALGPWPWPSPGPAPSPGAAPPRSRKMSGALLWPLL 57


>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
          Length = 500

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 9   RGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61
           RGPP  GP   PP PP +        GA  AAAAAAA    A H  + A  +Q
Sbjct: 167 RGPPHLGP---PPPPPHQ--GHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQ 214


>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 363

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 2   GRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61
           G++ P     P+P P+++PP  P RR R   L      AAA A        +  +  AR 
Sbjct: 72  GKSSPPPSAGPTPPPSSRPPPSPPRRRRPAWLQDEAEVAAALAGYGFINPSSTGEGPARP 131

Query: 62  ELALKTLGTDGLFLFSSLDTDG 83
             + +TL   G F   S+   G
Sbjct: 132 --STQTLRRSGAFPCESVGVPG 151


>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
           sapiens]
          Length = 363

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 2   GRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61
           G++ P     P+P P+++PP  P RR R   L      AAA A        +  +  AR 
Sbjct: 72  GKSSPPPSAGPTPPPSSRPPPSPPRRRRPAWLQDEAEVAAALAGYGFINPSSTGEGPARP 131

Query: 62  ELALKTLGTDGLFLFSSLDTDG 83
             + +TL   G F   S+   G
Sbjct: 132 --STQTLRRSGAFPCESVGVPG 151


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 6    PGQRGPPSPGPAAQPPAPPRRR 27
            PGQ GPP P   A PP PP +R
Sbjct: 1353 PGQPGPPGPSGEAGPPGPPGKR 1374


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 6    PGQRGPPSPGPAAQPPAPPRRR 27
            PGQ GPP P   A PP PP +R
Sbjct: 1302 PGQPGPPGPSGEAGPPGPPGKR 1323


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 6    PGQRGPPSPGPAAQPPAPPRRR 27
            PGQ GPP P   A PP PP +R
Sbjct: 1341 PGQPGPPGPSGEAGPPGPPGKR 1362


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 2   GRARPGQRGPPSPGPAA-------QPPAPPRRRAR-----SLALLGALLAAAAAAAVRVC 49
           GRARPG  GP  PGP +         PAPP  + R     S      + AAAA AA    
Sbjct: 93  GRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEP 152

Query: 50  ARHAEAQAAARQELALK 66
           A    A+ A    LA +
Sbjct: 153 APAGPAKPAGPAALAAR 169


>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
           sapiens]
          Length = 516

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 15  GPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGL 73
           G A  PP P    A    L  A   AAAAA  ++ A+ A A AA      L TLGT GL
Sbjct: 257 GKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA-----VLGTLGTPGL 310


>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
           sapiens]
          Length = 542

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 15  GPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGL 73
           G A  PP P    A    L  A   AAAAA  ++ A+ A A AA      L TLGT GL
Sbjct: 283 GKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA-----VLGTLGTPGL 336


>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
           sapiens]
          Length = 559

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 15  GPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGL 73
           G A  PP P    A    L  A   AAAAA  ++ A+ A A AA      L TLGT GL
Sbjct: 300 GKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA-----VLGTLGTPGL 353


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,485,189
Number of Sequences: 37866
Number of extensions: 1362262
Number of successful extensions: 10345
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 9844
Number of HSP's gapped (non-prelim): 549
length of query: 590
length of database: 18,247,518
effective HSP length: 108
effective length of query: 482
effective length of database: 14,157,990
effective search space: 6824151180
effective search space used: 6824151180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.