SEPN1 30541

Name: SEPN1	Sequence: fasta or formatted (556aa)		NCBI GI: 47578101
Description: selenoprotein N, 1 isoform 2 precursor		Referenced in: Selenium Proteins
Other entries for this name: alt prot [590aa] selenoprotein N, 1 isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.0 50 7 C cysteine 0.9 5 1 D aspartate 3.6 20 2 E glutamate 8.6 48 4 F phenylalanine 6.1 34 1 G glycine 5.4 30 1 H histidine 2.5 14 2 I isoleucine 4.1 23 2 K lysine 3.4 19 2 L leucine 11.2 62 2 M methionine 2.5 14 2 N asparagine 2.7 15 2 P proline 9.0 50 4 Q glutamine 3.6 20 2 R arginine 5.2 29 3 S serine 8.8 49 2 T threonine 5.0 28 1 U selenocysteine 0.2 1 1 V valine 4.3 24 2 W tryptophan 1.6 9 2 Y tyrosine 2.2 12 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 selenoprotein N, 1 isoform 2 precursor SEPN1 0.985 selenoprotein N, 1 isoform 1 precursor HOXA2 0.013 homeobox A2 SYNJ1 0.013 synaptojanin 1 isoform a LOC100287723 0.012 PREDICTED: hypothetical protein XP_002342271 ADRB1 0.010 beta-1-adrenergic receptor LOC100130360 0.009 PREDICTED: hypothetical protein ABR 0.009 active breakpoint cluster region-related protein is... CPAMD8 0.009 C3 and PZP-like, alpha-2-macroglobulin domain conta... POU3F3 0.009 POU class 3 homeobox 3 LOC100287907 0.008 PREDICTED: hypothetical protein LOC100287907 0.008 PREDICTED: hypothetical protein XP_002343168 TBC1D16 0.008 TBC1 domain family, member 16 PRR14 0.008 proline rich 14 SYNJ1 0.008 synaptojanin 1 isoform b LOC646862 0.008 PREDICTED: hypothetical protein LOC646862 LOC646862 0.008 PREDICTED: hypothetical protein LOC646862 LOC646862 0.008 PREDICTED: hypothetical protein LOC646862 COL11A1 0.007 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.007 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.007 alpha 1 type XI collagen isoform A preproprotein [Ho... TAF4 0.007 TBP-associated factor 4 PUF60 0.007 poly-U binding splicing factor 60KDa isoform c [Hom... PUF60 0.007 poly-U binding splicing factor 60KDa isoform b [Homo... PUF60 0.007 poly-U binding splicing factor 60KDa isoform a [Homo... LOC100288573 0.007 PREDICTED: hypothetical protein XP_002343799 PRR12 0.007 proline rich 12 IQCE 0.007 IQ motif containing E isoform 1 KLHL17 0.007 kelch-like 17 IQCE 0.007 IQ motif containing E isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.