Guide to the Human Genome
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Name: ADARB1 Sequence: fasta or formatted (741aa) NCBI GI: 7669477
Description:

RNA-specific adenosine deaminase B1 isoform 2

Referenced in:

RNA Editing and Other RNA Modifications

Other entries for this name:
alt prot [674aa] RNA-specific adenosine deaminase B1 isoform 7
alt prot [701aa] RNA-specific adenosine deaminase B1 isoform 1
alt prot [714aa] RNA-specific adenosine deaminase B1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         52           2
 C cysteine            0.9          7           1
 D aspartate           4.7         35           2
 E glutamate           5.3         39           2
 F phenylalanine       4.0         30           2
 G glycine             8.5         63           5
 H histidine           2.6         19           1
 I isoleucine          3.9         29           2
 K lysine              6.1         45           3
 L leucine            10.0         74           2
 M methionine          1.6         12           1
 N asparagine          4.6         34           2
 P proline             7.3         54           3
 Q glutamine           4.2         31           1
 R arginine            5.5         41           2
 S serine             10.3         76           4
 T threonine           5.0         37           2
 V valine              5.5         41           3
 W tryptophan          0.8          6           1
 Y tyrosine            2.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA-specific adenosine deaminase B1 isoform 2 
ADARB1                0.960   RNA-specific adenosine deaminase B1 isoform 3 
ADARB1                0.929   RNA-specific adenosine deaminase B1 isoform 1 
ADARB1                0.889   RNA-specific adenosine deaminase B1 isoform 7 [Homo...
ADARB2                0.462   adenosine deaminase, RNA-specific, B2 
ADAR                  0.156   adenosine deaminase, RNA-specific isoform d 
ADAR                  0.156   adenosine deaminase, RNA-specific isoform c 
ADAR                  0.156   adenosine deaminase, RNA-specific isoform b 
ADAR                  0.156   adenosine deaminase, RNA-specific isoform a 
ILF3                  0.099   interleukin enhancer binding factor 3 isoform c [Hom...
ILF3                  0.099   interleukin enhancer binding factor 3 isoform b [Hom...
ILF3                  0.099   interleukin enhancer binding factor 3 isoform a [Hom...
ILF3                  0.098   interleukin enhancer binding factor 3 isoform e [Ho...
ILF3                  0.098   interleukin enhancer binding factor 3 isoform d [Ho...
STRBP                 0.096   spermatid perinuclear RNA binding protein 
ADAD1                 0.083   adenosine deaminase domain containing 1 (testis-spe...
ADAD1                 0.083   adenosine deaminase domain containing 1 (testis-spec...
ADAD1                 0.073   adenosine deaminase domain containing 1 (testis-spe...
ADAD2                 0.040   adenosine deaminase domain containing 2 isoform 2 [...
ADAD2                 0.040   adenosine deaminase domain containing 2 isoform 1 [...
ADAT1                 0.038   adenosine deaminase, tRNA-specific 1 
TARBP2                0.033   TAR RNA binding protein 2 isoform b 
TARBP2                0.033   TAR RNA binding protein 2 isoform a 
TARBP2                0.033   TAR RNA binding protein 2 isoform b 
STAU1                 0.024   staufen isoform a 
STAU1                 0.024   staufen isoform b 
STAU1                 0.024   staufen isoform a 
STAU1                 0.024   staufen isoform a 
STAU1                 0.021   staufen isoform c 
STAU2                 0.019   staufen homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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