Guide to the Human Genome
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Name: ADARB1 Sequence: fasta or formatted (714aa) NCBI GI: 7669479
Description:

RNA-specific adenosine deaminase B1 isoform 3

Referenced in:

RNA Editing and Other RNA Modifications

Other entries for this name:
alt prot [674aa] RNA-specific adenosine deaminase B1 isoform 7
alt prot [701aa] RNA-specific adenosine deaminase B1 isoform 1
alt prot [741aa] RNA-specific adenosine deaminase B1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         48           2
 C cysteine            1.0          7           1
 D aspartate           4.8         34           2
 E glutamate           5.2         37           2
 F phenylalanine       3.8         27           2
 G glycine             8.5         61           5
 H histidine           2.8         20           1
 I isoleucine          3.9         28           2
 K lysine              6.0         43           3
 L leucine             9.9         71           2
 M methionine          1.7         12           1
 N asparagine          4.8         34           2
 P proline             7.3         52           3
 Q glutamine           4.1         29           1
 R arginine            5.6         40           2
 S serine             10.5         75           4
 T threonine           4.8         34           2
 V valine              5.7         41           3
 W tryptophan          0.7          5           1
 Y tyrosine            2.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA-specific adenosine deaminase B1 isoform 3 
ADARB1                0.996   RNA-specific adenosine deaminase B1 isoform 2 
ADARB1                0.926   RNA-specific adenosine deaminase B1 isoform 7 [Homo...
ADARB1                0.923   RNA-specific adenosine deaminase B1 isoform 1 
ADARB2                0.454   adenosine deaminase, RNA-specific, B2 
ADAR                  0.150   adenosine deaminase, RNA-specific isoform d 
ADAR                  0.150   adenosine deaminase, RNA-specific isoform c 
ADAR                  0.150   adenosine deaminase, RNA-specific isoform b 
ADAR                  0.150   adenosine deaminase, RNA-specific isoform a 
ILF3                  0.103   interleukin enhancer binding factor 3 isoform c [Hom...
ILF3                  0.103   interleukin enhancer binding factor 3 isoform b [Hom...
ILF3                  0.103   interleukin enhancer binding factor 3 isoform a [Hom...
ILF3                  0.102   interleukin enhancer binding factor 3 isoform e [Ho...
ILF3                  0.102   interleukin enhancer binding factor 3 isoform d [Ho...
STRBP                 0.100   spermatid perinuclear RNA binding protein 
ADAD1                 0.077   adenosine deaminase domain containing 1 (testis-spe...
ADAD1                 0.077   adenosine deaminase domain containing 1 (testis-spec...
ADAD1                 0.067   adenosine deaminase domain containing 1 (testis-spe...
ADAD2                 0.038   adenosine deaminase domain containing 2 isoform 2 [...
ADAD2                 0.035   adenosine deaminase domain containing 2 isoform 1 [...
TARBP2                0.034   TAR RNA binding protein 2 isoform b 
TARBP2                0.034   TAR RNA binding protein 2 isoform a 
TARBP2                0.034   TAR RNA binding protein 2 isoform b 
ADAT1                 0.033   adenosine deaminase, tRNA-specific 1 
STAU1                 0.025   staufen isoform a 
STAU1                 0.025   staufen isoform b 
STAU1                 0.025   staufen isoform a 
STAU1                 0.025   staufen isoform a 
STAU1                 0.022   staufen isoform c 
STAU2                 0.020   staufen homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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