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Search of human proteins with 47078224
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47078224 AT rich interactive domain 5A [Homo sapiens]
(594 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47078224 AT rich interactive domain 5A [Homo sapiens] 1228 0.0
gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo sapi... 192 6e-49
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens] 77 4e-14
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] 77 4e-14
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 71 2e-12
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 71 2e-12
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 71 2e-12
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 62 2e-09
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 62 2e-09
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 62 2e-09
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 59 1e-08
gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo s... 57 6e-08
gi|5453638 AT rich interactive domain 3B [Homo sapiens] 56 8e-08
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 55 2e-07
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens] 50 4e-06
gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive ... 50 4e-06
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 49 1e-05
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 46 8e-05
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 46 8e-05
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 45 1e-04
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 45 1e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 44 4e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 44 4e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 40 0.005
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.008
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 40 0.008
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 39 0.010
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 39 0.013
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 39 0.018
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 38 0.023
>gi|47078224 AT rich interactive domain 5A [Homo sapiens]
Length = 594
Score = 1228 bits (3178), Expect = 0.0
Identities = 594/594 (100%), Positives = 594/594 (100%)
Query: 1 MAAPVKGNRKQSTEGDALDPPASPKPAGKQNGIQNPISLEDSPEAGGEREEEQEREEEQA 60
MAAPVKGNRKQSTEGDALDPPASPKPAGKQNGIQNPISLEDSPEAGGEREEEQEREEEQA
Sbjct: 1 MAAPVKGNRKQSTEGDALDPPASPKPAGKQNGIQNPISLEDSPEAGGEREEEQEREEEQA 60
Query: 61 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGG 120
FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGG
Sbjct: 61 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGG 120
Query: 121 SPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPK 180
SPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPK
Sbjct: 121 SPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPK 180
Query: 181 KAKEERRMDQMMPGKTKADAADPAPLPSQEPPRNSTEQQGLASGSSVSFVGASGCPEAYK 240
KAKEERRMDQMMPGKTKADAADPAPLPSQEPPRNSTEQQGLASGSSVSFVGASGCPEAYK
Sbjct: 181 KAKEERRMDQMMPGKTKADAADPAPLPSQEPPRNSTEQQGLASGSSVSFVGASGCPEAYK 240
Query: 241 RLLSSFYCKGTHGIMSPLAKKKLLAQVSKVEALQCQEEGCRHGAEPQASPAVHLPESPQS 300
RLLSSFYCKGTHGIMSPLAKKKLLAQVSKVEALQCQEEGCRHGAEPQASPAVHLPESPQS
Sbjct: 241 RLLSSFYCKGTHGIMSPLAKKKLLAQVSKVEALQCQEEGCRHGAEPQASPAVHLPESPQS 300
Query: 301 PKGLTENSRHRLTPQEGLQAPGGSLREEAQAGPCPAAPIFKGCFYTHPTEVLKPVSQHPR 360
PKGLTENSRHRLTPQEGLQAPGGSLREEAQAGPCPAAPIFKGCFYTHPTEVLKPVSQHPR
Sbjct: 301 PKGLTENSRHRLTPQEGLQAPGGSLREEAQAGPCPAAPIFKGCFYTHPTEVLKPVSQHPR 360
Query: 361 DFFSRLKDGVLLGPPGKEGLSVKEPQLVWGGDANRPSAFHKGGSRKGILYPKPKACWVSP 420
DFFSRLKDGVLLGPPGKEGLSVKEPQLVWGGDANRPSAFHKGGSRKGILYPKPKACWVSP
Sbjct: 361 DFFSRLKDGVLLGPPGKEGLSVKEPQLVWGGDANRPSAFHKGGSRKGILYPKPKACWVSP 420
Query: 421 MAKVPAESPTLPPTFPSSPGLGSKRSLEEEGAAHSGKRLRAVSPFLKEADAKKCGAKPAG 480
MAKVPAESPTLPPTFPSSPGLGSKRSLEEEGAAHSGKRLRAVSPFLKEADAKKCGAKPAG
Sbjct: 421 MAKVPAESPTLPPTFPSSPGLGSKRSLEEEGAAHSGKRLRAVSPFLKEADAKKCGAKPAG 480
Query: 481 SGLVSCLLGPALGPVPPEAYRGTMLHCPLNFTGTPGPLKGQAALPFSPLVIPAFPAHFLA 540
SGLVSCLLGPALGPVPPEAYRGTMLHCPLNFTGTPGPLKGQAALPFSPLVIPAFPAHFLA
Sbjct: 481 SGLVSCLLGPALGPVPPEAYRGTMLHCPLNFTGTPGPLKGQAALPFSPLVIPAFPAHFLA 540
Query: 541 TAGPSPMAAGLMHFPPTSFDSALRHRLCPASSAWHAPPVTTYAAPHFFHLNTKL 594
TAGPSPMAAGLMHFPPTSFDSALRHRLCPASSAWHAPPVTTYAAPHFFHLNTKL
Sbjct: 541 TAGPSPMAAGLMHFPPTSFDSALRHRLCPASSAWHAPPVTTYAAPHFFHLNTKL 594
>gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo
sapiens]
Length = 1188
Score = 192 bits (489), Expect = 6e-49
Identities = 101/200 (50%), Positives = 129/200 (64%), Gaps = 11/200 (5%)
Query: 29 KQNGIQNPISLEDSPEAGGEREEEQEREEEQAFLVSLYKFMKERHTPIERVPHLGFKQIN 88
K N +S E+ P+ E+ R +EQAFLV+LYK+MKER TPIER+P+LGFKQIN
Sbjct: 295 KNNHNCKKVSNEEKPKVA---IGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQIN 351
Query: 89 LWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKG 148
LW +++A +KLG YE +T RR WK++YDELGG+PGSTSAATCTRRHYERL+LPY R +KG
Sbjct: 352 LWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKG 411
Query: 149 EDDKPLPTSKPRKQYKMAKENRGDDGATERPKKAKEERRMDQMMPGKTKADAADPAPLPS 208
E+DKPLP KPRKQ ++EN E K +R+ +P K P P +
Sbjct: 412 EEDKPLPPIKPRKQENSSQEN-------ENKTKVSGTKRIKHEIPKSKKEKENAPKPQDA 464
Query: 209 QE-PPRNSTEQQGLASGSSV 227
E EQ+ L S S+
Sbjct: 465 AEVSSEQEKEQETLISQKSI 484
Score = 36.6 bits (83), Expect = 0.067
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 247 YCKGTHGIMSPLAKKKLLAQVS 268
Y +G GIMSPLAKKKLL+QVS
Sbjct: 679 YSRGNPGIMSPLAKKKLLSQVS 700
Score = 32.0 bits (71), Expect = 1.7
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 21/108 (19%)
Query: 444 KRSLEEEGAAHSGKRLRAVSPF--LKEADAKKCGAKPAGSGLVSCLLG-----------P 490
KRSLE+ +GK+ RAVSP KE K+ ++ G + G P
Sbjct: 1013 KRSLEDLDLVIAGKKARAVSPLDPSKEVSGKEKASEQESEGSKAAHGGHSGGGSEGHKLP 1072
Query: 491 ALGPVPPEAYRGTMLHCPLN------FTGTPGPLKGQAALPFSPLVIP 532
P+ P Y G++ + LN ++ + LK Q L SPL+ P
Sbjct: 1073 LSSPIFPGLYSGSLCNSGLNSRLPAGYSHSLQYLKNQTVL--SPLMQP 1118
>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
Length = 1226
Score = 77.0 bits (188), Expect = 4e-14
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 40 EDSPEAGGEREEEQER--EEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVE 97
++ + E EEE E EE + FL LYKFM++R TPI + P LG++ +NL+K+++ V
Sbjct: 289 KEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVH 348
Query: 98 KLGAYELVTGRRLWKNVYDELGGSPGSTSAA----TCTRRHYERLVLPYVRHLKGEDDKP 153
KLG ++ + +WK VY +L G P SAA C + Y Y R E
Sbjct: 349 KLGGFDNIESGAVWKQVYQDL-GIPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIEFQMA 407
Query: 154 LPTSKPRKQYKMAKENR----GDDGATERPKKAKEERR 187
LP KQ K + + ++ TE + EE R
Sbjct: 408 LPEKVVNKQCKECENVKEIKVKEENETEIKEIKMEEER 445
>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
Length = 1312
Score = 77.0 bits (188), Expect = 4e-14
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 40 EDSPEAGGEREEEQER--EEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVE 97
++ + E EEE E EE + FL LYKFM++R TPI + P LG++ +NL+K+++ V
Sbjct: 289 KEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVH 348
Query: 98 KLGAYELVTGRRLWKNVYDELGGSPGSTSAA----TCTRRHYERLVLPYVRHLKGEDDKP 153
KLG ++ + +WK VY +L G P SAA C + Y Y R E
Sbjct: 349 KLGGFDNIESGAVWKQVYQDL-GIPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIEFQMA 407
Query: 154 LPTSKPRKQYKMAKENR----GDDGATERPKKAKEERR 187
LP KQ K + + ++ TE + EE R
Sbjct: 408 LPEKVVNKQCKECENVKEIKVKEENETEIKEIKMEEER 445
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 71.2 bits (173), Expect = 2e-12
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 26/204 (12%)
Query: 11 QSTEGDALDPPASPKPAGKQNGIQNPISLEDSPEAGGEREEEQEREEEQAFLVSLYKFMK 70
+S+ D D PA K+ + + E+ PE EE + EE FL LYKFM+
Sbjct: 273 ESSSSDDEDGPAEENDEEKEKEAKK--TEEEVPE------EELDPEERDNFLQQLYKFME 324
Query: 71 ERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATC 130
+R TPI + P LG+K +NL+K+++ V G + + +WK +Y +LG +++A+
Sbjct: 325 DRGTPINKPPVLGYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYN 384
Query: 131 TRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPKKAKEERRMDQ 190
+ Y + + + + + + Q++ + PK +E++ +++
Sbjct: 385 VKTAYRKYLYGFEEYCRSAN----------IQFRTVHHH--------EPKVKEEKKDLEE 426
Query: 191 MMPGKTKADAADPAPLPSQEPPRN 214
M K D P EP N
Sbjct: 427 SMEEALKLDQEMPLTEVKSEPEEN 450
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 71.2 bits (173), Expect = 2e-12
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 26/204 (12%)
Query: 11 QSTEGDALDPPASPKPAGKQNGIQNPISLEDSPEAGGEREEEQEREEEQAFLVSLYKFMK 70
+S+ D D PA K+ + + E+ PE EE + EE FL LYKFM+
Sbjct: 273 ESSSSDDEDGPAEENDEEKEKEAKK--TEEEVPE------EELDPEERDNFLQQLYKFME 324
Query: 71 ERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATC 130
+R TPI + P LG+K +NL+K+++ V G + + +WK +Y +LG +++A+
Sbjct: 325 DRGTPINKPPVLGYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYN 384
Query: 131 TRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPKKAKEERRMDQ 190
+ Y + + + + + + Q++ + PK +E++ +++
Sbjct: 385 VKTAYRKYLYGFEEYCRSAN----------IQFRTVHHH--------EPKVKEEKKDLEE 426
Query: 191 MMPGKTKADAADPAPLPSQEPPRN 214
M K D P EP N
Sbjct: 427 SMEEALKLDQEMPLTEVKSEPEEN 450
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 71.2 bits (173), Expect = 2e-12
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 26/204 (12%)
Query: 11 QSTEGDALDPPASPKPAGKQNGIQNPISLEDSPEAGGEREEEQEREEEQAFLVSLYKFMK 70
+S+ D D PA K+ + + E+ PE EE + EE FL LYKFM+
Sbjct: 273 ESSSSDDEDGPAEENDEEKEKEAKK--TEEEVPE------EELDPEERDNFLQQLYKFME 324
Query: 71 ERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATC 130
+R TPI + P LG+K +NL+K+++ V G + + +WK +Y +LG +++A+
Sbjct: 325 DRGTPINKPPVLGYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYN 384
Query: 131 TRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPKKAKEERRMDQ 190
+ Y + + + + + + Q++ + PK +E++ +++
Sbjct: 385 VKTAYRKYLYGFEEYCRSAN----------IQFRTVHHH--------EPKVKEEKKDLEE 426
Query: 191 MMPGKTKADAADPAPLPSQEPPRN 214
M K D P EP N
Sbjct: 427 SMEEALKLDQEMPLTEVKSEPEEN 450
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 61.6 bits (148), Expect = 2e-09
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 54 EREEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKN 113
ER + AFL L +F R +P +++P +G K+++L +Y V LG + V+ + W
Sbjct: 12 ERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGE 71
Query: 114 VYDELGGSPGSTSAATCTRRHYERLVLPYVR-HLKGEDDKPLPTSKPRKQ 162
+ +E ++AA +++Y R + Y + H GEDD +P P+ Q
Sbjct: 72 IVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKPQ 121
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo
sapiens]
Length = 2191
Score = 61.6 bits (148), Expect = 2e-09
Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 23/235 (9%)
Query: 3 APVKGNRKQSTEG--DALDPPASPKPA-----GKQNGIQNPISLEDSPEAGGEREE---- 51
AP N ++ G D + P S P GK+ G P S + E
Sbjct: 942 APAMVNSSAASVGLADMMSPGESKLPLPLKADGKEEGTPQPESKSKKSSSSTTTGEKITK 1001
Query: 52 --EQEREEEQAFLVSLY-KFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGR 108
E E E+ V Y FM+ER +P+ +P +G K ++L+++Y V+++G V
Sbjct: 1002 VYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKN 1061
Query: 109 RLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKP--LPTSKPRKQYKMA 166
+ W+ + L S++A++ +++ + L + +GE+ P T +KQ K+
Sbjct: 1062 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQ 1121
Query: 167 KENRGDDGATERPKKAKEERRMDQM-MPGKTKADAADPAPLPSQEPPRNSTEQQG 220
+ + G+ + P+ + +PG K P P+ P T QG
Sbjct: 1122 PPSPANSGSLQGPQTPQSTGSNSMAEVPGDLK------PPTPASTPHGQMTPMQG 1170
Score = 30.4 bits (67), Expect = 4.8
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 24/105 (22%)
Query: 428 SPTLPPTFPSSPGLGSKRSLEEEGAAHSGKRLRAVSPFLKEADAKKCGAKPAGSGLVSCL 487
SP+ PP PS P + GAA G++ A K+ A+ A PA +
Sbjct: 384 SPSAPPPPPSQP----QSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAA-AQQR 438
Query: 488 LGPALGPVPPEAYRGTMLHCPLNFTGTPGPLKGQA-ALPFSPLVI 531
PA+ P GTPGP G++ P P+V+
Sbjct: 439 SHPAMSP------------------GTPGPTMGRSQGSPMDPMVM 465
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo
sapiens]
Length = 2178
Score = 61.6 bits (148), Expect = 2e-09
Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 23/235 (9%)
Query: 3 APVKGNRKQSTEG--DALDPPASPKPA-----GKQNGIQNPISLEDSPEAGGEREE---- 51
AP N ++ G D + P S P GK+ G P S + E
Sbjct: 929 APAMVNSSAASVGLADMMSPGESKLPLPLKADGKEEGTPQPESKSKKSSSSTTTGEKITK 988
Query: 52 --EQEREEEQAFLVSLY-KFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGR 108
E E E+ V Y FM+ER +P+ +P +G K ++L+++Y V+++G V
Sbjct: 989 VYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKN 1048
Query: 109 RLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKP--LPTSKPRKQYKMA 166
+ W+ + L S++A++ +++ + L + +GE+ P T +KQ K+
Sbjct: 1049 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQ 1108
Query: 167 KENRGDDGATERPKKAKEERRMDQM-MPGKTKADAADPAPLPSQEPPRNSTEQQG 220
+ + G+ + P+ + +PG K P P+ P T QG
Sbjct: 1109 PPSPANSGSLQGPQTPQSTGSNSMAEVPGDLK------PPTPASTPHGQMTPMQG 1157
Score = 30.4 bits (67), Expect = 4.8
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 24/105 (22%)
Query: 428 SPTLPPTFPSSPGLGSKRSLEEEGAAHSGKRLRAVSPFLKEADAKKCGAKPAGSGLVSCL 487
SP+ PP PS P + GAA G++ A K+ A+ A PA +
Sbjct: 384 SPSAPPPPPSQP----QSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAA-AQQR 438
Query: 488 LGPALGPVPPEAYRGTMLHCPLNFTGTPGPLKGQA-ALPFSPLVI 531
PA+ P GTPGP G++ P P+V+
Sbjct: 439 SHPAMSP------------------GTPGPTMGRSQGSPMDPMVM 465
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 59.3 bits (142), Expect = 1e-08
Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 15/211 (7%)
Query: 14 EGDALDPPASPKPAGKQNGIQNPISLEDSPEAGGEREEEQEREEEQAFLVSLY-KFMKER 72
E D++ P PK + + E + E E E+ V Y FM+ER
Sbjct: 1011 ESDSISSPGWPKTPSSPKSSSSTTTGEKITKV-----YELGNEPERKLWVDRYLTFMEER 1065
Query: 73 HTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTR 132
+P+ +P +G K ++L+++Y V+++G V + W+ + L S++A++ +
Sbjct: 1066 GSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKK 1125
Query: 133 RHYERLVLPYVRHLKGEDDKP--LPTSKPRKQYKMAKENRGDDGATERPKKAKEERRMDQ 190
++ + L + +GE+ P T +KQ K+ + + G+ + P+ +
Sbjct: 1126 QYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSGSLQGPQTPQSTGSNSM 1185
Query: 191 M-MPGKTKADAADPAPLPSQEPPRNSTEQQG 220
+PG K P P+ P T QG
Sbjct: 1186 AEVPGDLK------PPTPASTPHGQMTPMQG 1210
Score = 30.4 bits (67), Expect = 4.8
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 24/105 (22%)
Query: 428 SPTLPPTFPSSPGLGSKRSLEEEGAAHSGKRLRAVSPFLKEADAKKCGAKPAGSGLVSCL 487
SP+ PP PS P + GAA G++ A K+ A+ A PA +
Sbjct: 384 SPSAPPPPPSQP----QSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAA-AQQR 438
Query: 488 LGPALGPVPPEAYRGTMLHCPLNFTGTPGPLKGQA-ALPFSPLVI 531
PA+ P GTPGP G++ P P+V+
Sbjct: 439 SHPAMSP------------------GTPGPTMGRSQGSPMDPMVM 465
>gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo
sapiens]
Length = 412
Score = 56.6 bits (135), Expect = 6e-08
Identities = 72/277 (25%), Positives = 105/277 (37%), Gaps = 52/277 (18%)
Query: 7 GNRKQSTEGDALDPPASPKPAGKQN--------GIQNPISLEDSPEAGGERE---EEQER 55
GN E DA + + AG + G Q P S P E EEQ +
Sbjct: 46 GNVGAEEEEDAEEDEEKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFK 105
Query: 56 E--------EEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTG 107
+ + + FL L+ FM++R TP+ RVP + + ++L+ +++ V G V
Sbjct: 106 QLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVIN 165
Query: 108 RRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAK 167
R++W+ V L TSAA R Y + + PY + + S P +
Sbjct: 166 RKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPY-------ECETRALSSPGELQAAID 218
Query: 168 ENRGDDGATERPKKAKEERRMDQM------MPGKTKADAADPAPLPSQEPPRNSTEQQGL 221
NR +E RR + G A DPA P PP + G
Sbjct: 219 SNR------------REGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQS-SPGP 265
Query: 222 ASGSSVSFVGASGCP-EAYKRLLSSFYCKGTHGIMSP 257
A GS+ SG P A +L S K GI +P
Sbjct: 266 AQGST------SGLPAHACAQLSPSPIKKEESGIPNP 296
>gi|5453638 AT rich interactive domain 3B [Homo sapiens]
Length = 560
Score = 56.2 bits (134), Expect = 8e-08
Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 30/211 (14%)
Query: 29 KQNGIQNPISLEDSPEAGGEREEEQERE-----------EEQAFLVSLYKFMKERHTPIE 77
KQNG L S +A G R E R+ E + FL L+ FM++R TPI
Sbjct: 183 KQNG-----GLAWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPIN 237
Query: 78 RVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYER 137
R+P + + ++L+ +YK V + G + +++W+ + L TSAA R Y +
Sbjct: 238 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 297
Query: 138 LVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPKKAKEERRMDQMMPGKTK 197
+ Y E +K +S Q + DG ++ + P
Sbjct: 298 YLYAY------ECEKKALSSPAELQAAI-------DGNRREGRRPSYSSSLFGYSPAAAT 344
Query: 198 ADAADPAPLPSQEPPRNSTEQQGLASGSSVS 228
A AA AP PP+ GL S S +
Sbjct: 345 AAAAAGAP-ALLSPPKIRFPILGLGSSSGTN 374
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 43 PEAGGEREEEQERE--------EEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYK 94
P+ G EEQ ++ + + FL L+ FM++R TP+ R+P + + ++L+ +Y
Sbjct: 218 PDHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYV 277
Query: 95 AVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKG 148
V + G V ++LW+ + L TSAA R Y + + PY +G
Sbjct: 278 LVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRG 331
>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
Length = 1544
Score = 50.4 bits (119), Expect = 4e-06
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 39 LEDSPEAGGEREEEQEREEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEK 98
L +P E E + + FL + K+ + + + + ++PH+ K ++L+++ K V +
Sbjct: 81 LHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTL-KIPHVERKILDLFQLNKLVAE 139
Query: 99 LGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGED----DKP- 153
G + +V R W + ++G +PG + + R HYER++ PY L G+ KP
Sbjct: 140 EGGFAVVCKDRKWTKIATKMGFAPGK-AVGSHIRGHYERILNPYNLFLSGDSLRCLQKPN 198
Query: 154 LPTSKPRKQYK 164
L T K+YK
Sbjct: 199 LTTDTKDKEYK 209
>gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive
domain 1B (RBP2-like), partial [Homo sapiens]
Length = 977
Score = 50.4 bits (119), Expect = 4e-06
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 39 LEDSPEAGGEREEEQEREEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEK 98
L +P E E + + FL + K+ + + + + ++PH+ K ++L+++ K V +
Sbjct: 81 LHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTL-KIPHVERKILDLFQLNKLVAE 139
Query: 99 LGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGED----DKP- 153
G + +V R W + ++G +PG + + R HYER++ PY L G+ KP
Sbjct: 140 EGGFAVVCKDRKWTKIATKMGFAPGK-AVGSHIRGHYERILNPYNLFLSGDSLRCLQKPN 198
Query: 154 LPTSKPRKQYK 164
L T K+YK
Sbjct: 199 LTTDTKDKEYK 209
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 48.9 bits (115), Expect = 1e-05
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 16 DALDPPASPKPAGKQNGI---------QNPISLED-----SPEAGGEREEEQEREEEQAF 61
D L A +P +++GI Q P ++E +P E E + + +
Sbjct: 26 DPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNY 85
Query: 62 LVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGS 121
L + KF + + + + ++P++ + ++L+ + K V + G YE + R W V L
Sbjct: 86 LDQIAKFWEIQGSSL-KIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYP 144
Query: 122 PGSTSAATCTRRHYERLVLPYVRHLKGE-----DDKPLPTSKPRKQYK 164
PG + + R HYER+V PY + G + +P + K+YK
Sbjct: 145 PGK-NIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYK 191
Score = 29.6 bits (65), Expect = 8.2
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 160 RKQYKMAKENRGDDGATER--PKKAK------EERRMDQMMPGKTKADAADPAPLPSQEP 211
R++ K+ + GDD A E PK+ + EE + ++ + +T + PAP+P+
Sbjct: 1458 RRRRKVDRGGEGDDPAREELEPKRVRSSGPEAEEVQEEEELEEETGGEGP-PAPIPTTGS 1516
Query: 212 PRNSTEQQGL------ASGSSVSF 229
P Q GL SG S F
Sbjct: 1517 PSTQENQNGLEPAEGTTSGPSAPF 1540
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 46.2 bits (108), Expect = 8e-05
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 61 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGG 120
FL L KF + + + + ++P + K ++L+ + K V G +E+VT + W V LG
Sbjct: 90 FLDQLAKFWELQGSTL-KIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGY 148
Query: 121 SPGSTSAATCTRRHYERLVLPY 142
PG + + HYER++ PY
Sbjct: 149 LPGK-GTGSLLKSHYERILYPY 169
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 46.2 bits (108), Expect = 8e-05
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 61 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGG 120
FL L KF + + + + ++P + K ++L+ + K V G +E+VT + W V LG
Sbjct: 90 FLDQLAKFWELQGSTL-KIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGY 148
Query: 121 SPGSTSAATCTRRHYERLVLPY 142
PG + + HYER++ PY
Sbjct: 149 LPGK-GTGSLLKSHYERILYPY 169
>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
sapiens]
Length = 1539
Score = 45.4 bits (106), Expect = 1e-04
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 16 DALDPPASPKPAGKQNGI---------QNPISLED-----SPEAGGEREEEQEREEEQAF 61
D L A +P +++GI Q P ++E +P E E + + +
Sbjct: 26 DPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNY 85
Query: 62 LVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGS 121
L + KF + + + + ++P++ K ++L+ + K V + G YE + R W V L
Sbjct: 86 LDQIAKFWEIQGSSL-KIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYP 144
Query: 122 PGSTSAATCTRRHYERLVLPYVRHLKGE-----DDKPLPTSKPRKQYK 164
PG + + R HYER++ PY G + P K+YK
Sbjct: 145 PGK-NIGSLLRSHYERIIYPYEMFQSGANHVQCNTHPFDNEVKDKEYK 191
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 45.4 bits (106), Expect = 1e-04
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 16 DALDPPASPKPAGKQNGI---------QNPISLED-----SPEAGGEREEEQEREEEQAF 61
D L A +P +++GI Q P ++E +P E E + + +
Sbjct: 26 DPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNY 85
Query: 62 LVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGS 121
L + KF + + + + ++P++ K ++L+ + K V + G YE + R W V L
Sbjct: 86 LDQIAKFWEIQGSSL-KIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYP 144
Query: 122 PGSTSAATCTRRHYERLVLPYVRHLKGE-----DDKPLPTSKPRKQYK 164
PG + + R HYER++ PY G + P K+YK
Sbjct: 145 PGK-NIGSLLRSHYERIIYPYEMFQSGANHVQCNTHPFDNEVKDKEYK 191
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 43.9 bits (102), Expect = 4e-04
Identities = 36/183 (19%), Positives = 74/183 (40%), Gaps = 9/183 (4%)
Query: 56 EEEQAFLVSLY-KFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNV 114
E E+ V Y F +E+ + +P +G K ++L+++Y +V+++G V + W+ +
Sbjct: 1017 EPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWREL 1076
Query: 115 YDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKP---LPTSKPRKQYKMAKENRG 171
L S++A++ +++ + L + +GED P + Q K+ +
Sbjct: 1077 ATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPA 1136
Query: 172 DDGATERPKKAKEERRM-----DQMMPGKTKADAADPAPLPSQEPPRNSTEQQGLASGSS 226
G+ + P+ + D P + PLP + Q GS
Sbjct: 1137 GSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFNDGSD 1196
Query: 227 VSF 229
+F
Sbjct: 1197 STF 1199
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 43.9 bits (102), Expect = 4e-04
Identities = 36/183 (19%), Positives = 74/183 (40%), Gaps = 9/183 (4%)
Query: 56 EEEQAFLVSLY-KFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNV 114
E E+ V Y F +E+ + +P +G K ++L+++Y +V+++G V + W+ +
Sbjct: 1017 EPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWREL 1076
Query: 115 YDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKP---LPTSKPRKQYKMAKENRG 171
L S++A++ +++ + L + +GED P + Q K+ +
Sbjct: 1077 ATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPA 1136
Query: 172 DDGATERPKKAKEERRM-----DQMMPGKTKADAADPAPLPSQEPPRNSTEQQGLASGSS 226
G+ + P+ + D P + PLP + Q GS
Sbjct: 1137 GSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFNDGSD 1196
Query: 227 VSF 229
+F
Sbjct: 1197 STF 1199
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 40.4 bits (93), Expect = 0.005
Identities = 72/270 (26%), Positives = 95/270 (35%), Gaps = 34/270 (12%)
Query: 297 SPQSPKGLTENSRHR---LTPQEGLQAPGGSLREEAQAG----PCPAAPIFKGCFYTHPT 349
+P SPKG + TP +P G L + G P P KG T P
Sbjct: 1201 TPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPP 1260
Query: 350 EVLKPVSQHPRDFFSRLKDGVLLGP-PGKEGLSVKEPQLVWGGDANRPSAFHKGG----- 403
K P LK G+ P G +V P GG A P KG
Sbjct: 1261 ---KGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPP---KGAPTPPA 1314
Query: 404 ----SRKGIL-YPKPKACWVSPMAKVPAE--SPTLPPTFPSSPGLGSKRSLEEEGAAHSG 456
S KG P PK P P+ +PTLP T PSS G + S +E +
Sbjct: 1315 ATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAA 1374
Query: 457 KRLRAVSPFLKEADAKKCGAKPAGSGLVSCLLGPALGPVPPEAYRGTMLHCPLNFTGTPG 516
P + K+ A P+ G + PA+ P+ P+ T P+ G
Sbjct: 1375 TPSHKGGPAMTPPSPKRGPAIPSPKGDPT---SPAVIPLSPKKAPAT----PVTREGAAT 1427
Query: 517 PLKGQAALP-FSPLVIPAFPAHFLATAGPS 545
P KG P +P+ + PA GP+
Sbjct: 1428 PSKGDLTPPAVTPVSLKKAPATSAPKGGPA 1457
Score = 37.4 bits (85), Expect = 0.039
Identities = 108/445 (24%), Positives = 156/445 (35%), Gaps = 76/445 (17%)
Query: 174 GATERPKKAKEERRMDQMMPGKTKADAADPAPLPSQE---PPRNSTEQQGLASGSSVSFV 230
GA P + +P T + P S+E PP + +G
Sbjct: 1331 GAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKG---------- 1380
Query: 231 GASGCPEAYKRLLSSFYCKG--THGIMSPLAKKKLLAQVSKVEALQCQEEGCRHGAEPQA 288
G + P + KR + KG T + PL+ KK A E +G P A
Sbjct: 1381 GPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKG---DLTPPA 1437
Query: 289 SPAVHLPESP--QSPKG--LTENSRH-----RLTPQEGLQAPG------GSLREEAQAGP 333
V L ++P +PKG T +S+ +TP + P S ++A A P
Sbjct: 1438 VTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATP 1497
Query: 334 CP-AAPIFKGCFYTHPTEVLKPVSQHPRDFFSRLKDGVLLGPPGKEGLSVKEPQLVWGGD 392
P AP + P EV P + R +D + P LS K P + +
Sbjct: 1498 APMGAPTLPAVIPSSPKEV--PATPSSR------RDPIA---PTATLLSKKTPATLAPKE 1546
Query: 393 ANRPSAFHKGGSRKGILYPKPKACWVSPMAKVPAESPTL-PPTFPSSPGLGSKRSLEEEG 451
A P A +K P PK +P +K + P + P T+ +P K L
Sbjct: 1547 ALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAP--SPKELLIPPA 1604
Query: 452 AAHSGKRLRAVSPFLKEADAKKCGAKPAGSGLVSCLLGPALGPVPPEAYRGT-----MLH 506
+ P + +K A PA G P PV P + + + +
Sbjct: 1605 VTSPSPKEAPTPPAVTPPSPEKGPATPAPKGT------PTSPPVTPSSLKDSPTSPASVT 1658
Query: 507 CPLNFT------GTPGPLKGQAALPFSPLVIPAFPAHFLATAGPSPMAAGLMHFPPTSFD 560
C + T G P KG AL LV PA + + TA P G P T
Sbjct: 1659 CKMGATVPQASKGLPAK-KGPTALK-EVLVAPAPESTPIITA---PTRKG----PQTKKS 1709
Query: 561 SALRHRLCPASSAWHAP--PVTTYA 583
SA +CP SA + P++T A
Sbjct: 1710 SATSPPICPDPSAKNGSKGPLSTVA 1734
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 39.7 bits (91), Expect = 0.008
Identities = 107/477 (22%), Positives = 145/477 (30%), Gaps = 68/477 (14%)
Query: 116 DELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGA 175
D G +PG+ S A R + R +P PT PRK A E+ +
Sbjct: 163 DTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRP-PTEGPRKSVSSASEH-----S 216
Query: 176 TERPKKAKEERRMD----QMMPGKTKADAADPAPLPSQEPPRNSTEQQGLASGSSVSFVG 231
T P A R Q ++ + +A P P++ P + A S G
Sbjct: 217 TTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKG 276
Query: 232 ASGCPEAYKRLLSSFYCKGTHGIMSPLAKKKLLAQVSKVEALQCQEE----GCRHGAEPQ 287
+A + + K + PL+ L A S ALQ Q H +
Sbjct: 277 L----QALRPPQVTPPRKDAAPALGPLSSSPL-ATPSPSAALQSQAPPTLPATPHSSSLT 331
Query: 288 ASPAVHLPESPQSPKGLTENSRHRLTPQEGLQAPGGSLREEAQAGPCPAAPIFKGCFYTH 347
A LP +P SP P P +QA +P +
Sbjct: 332 CQLATPLPLAPPSPSA----------PPSLQTLPSPPATPPSQATTSLGSPTLQATHSFL 381
Query: 348 PTEVLKPVSQHPRDFFSRLKDGVLLGPPGKEGLSVKEPQLVWGGDANRPSAFHKGGSRKG 407
P+ L P++ P L L PP P A A H
Sbjct: 382 PSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVH------- 434
Query: 408 ILYPKPKACWVSPMAKVPAESPTLPPTFPSS-------PGLGSKRSLEEEGAAHSGKRLR 460
L P + SP + P P PP PS+ P L + S
Sbjct: 435 -LLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSP 493
Query: 461 AVSPFLKEADAKKCGAKPAGSGLVSCLLGPALGPVPPEAYRGTMLHCPLNFTGTPGPLKG 520
+ +P A P PAL P +A P +F G P
Sbjct: 494 SATP--PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSP----PASFPGQ-APFSP 546
Query: 521 QAALPFSPLVIPAFPAHFLATAGPSPMAAGLMHFPPTSFDSALRHRLCPASSAWHAP 577
A+LP SPL P A P +AA L+ PP+ PAS AP
Sbjct: 547 SASLPMSPLATPPPQA-------PPVLAAPLLQVPPSP----------PASPTLQAP 586
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 39.7 bits (91), Expect = 0.008
Identities = 113/488 (23%), Positives = 158/488 (32%), Gaps = 99/488 (20%)
Query: 121 SPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAKENRGDDGATERPK 180
SPGS S+ T H+ +P V G+ D P P + R+ +A A+ P
Sbjct: 1887 SPGSPSSLT----HH----IPTV----GDPDFPAPPRRSRRPSPLAPRPPPSRWASP-PL 1933
Query: 181 KAKEERRMDQMMP-----GKTKADAADPAPLPSQEPPRN---STEQQGLASGSSVSFVGA 232
K + R+ T + A P P PS PP + E + SG S + +
Sbjct: 1934 KTSPQLRVPPPTSVVTALTPTSGELAPPGPAPSPPPPEDLGPDFEDMEVVSGLSAADLDF 1993
Query: 233 SGCPEAYKRLLSSFYCKGTHGIMSPLAKKKLLAQVSKVEALQCQEEGCRHGAEPQASPA- 291
+ S L + ++ A+ G +E ++SP
Sbjct: 1994 AA---------------------SLLGTEPFQEEIVAAGAMGSSHGGPGDSSEEESSPTS 2032
Query: 292 --VHLPESPQSPKGLTENSRHRLTPQEGLQAPGGSLREEAQAGPCP----AAPIFKGCFY 345
+H P + S GL ++ E L EA+A P P G
Sbjct: 2033 RYIHFPVTVVSAPGLAPSATPGAPRIEQLDGVDDGTDSEAEAVQQPRGQGTPPSGPGVVR 2092
Query: 346 THPTEVLKPVSQHPRDFFSRLKDGVL--LGPPGKEGLSVKEPQLVWGGDANRPSAFHKGG 403
++ P D S + D VL LG PG G G
Sbjct: 2093 AGVLGAAGDRARPPEDLPSEIVDFVLKNLGGPGDGG----------------------AG 2130
Query: 404 SRKGILYPKPKACWVSPMAKVPAESPTLPP-TFPSSPGLGSKRSLEEEGAAHSGKRLRAV 462
R+ L P P S ++ SP P TF PG R L A K A
Sbjct: 2131 PREESLPPAPPLANGSQPSQGLTASPADPTRTFAWLPGAPGVRVLSLGPAPEPPK--PAT 2188
Query: 463 SPFLKEADAKKCGAKPAGSGLVSCLLGPALGPVPPEAYRGTM-----LHCPLNFTGTPGP 517
S + + K AG G PVPP + + P ++T PGP
Sbjct: 2189 SKIILVNKLGQVFVKMAGEG----------EPVPPPVKQPPLPPTISPTAPTSWTLPPGP 2238
Query: 518 LKGQAALPFSPLVIPAFPAHFLATAGPSPMAAGLMHFPPTSFDSALRHRLCPASSAWHAP 577
L G LP +V PA P P P+ L P + A+R + S P
Sbjct: 2239 LLG--VLPVVGVVRPAPP------PPPPPLTLVLSSGPASPPRQAIRVKRVSTFSGRSPP 2290
Query: 578 PVTTYAAP 585
Y AP
Sbjct: 2291 APPPYKAP 2298
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 39.3 bits (90), Expect = 0.010
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 22/172 (12%)
Query: 161 KQYKMAKENRGDDGATERPKKAKEERRMDQMMPGKTKADAADPAPLPSQEPPRNSTEQQG 220
KQ ++A+ R D ER + ++ R P K K ++ PAP P+ PR+ ++
Sbjct: 1425 KQRELARLQRKHDH--ERDESSRSPARRGPGRPRKRKHSSSLPAPRPTGPLPRSDGKKVK 1482
Query: 221 LASGS----SVSFVGASGCPEAYKRLLSSFYCKGTHGIMSPLAKKKLLAQVSKVEALQCQ 276
S G SG A KR K + + L Q + VE QC+
Sbjct: 1483 AVRTSLGLLCAELRGGSGGEPAKKR------SKLERSVYAGL-------QTASVEKAQCK 1529
Query: 277 EEGCRHGAEPQASPAVHLPESPQSPKGLTENSRHRLTPQEGLQAPGGSLREE 328
+ C+ G P + V + KGL + Q+ PGG +RE+
Sbjct: 1530 KSSCQGGLAPSVAHRVAQLKPKVKSKGLPTGLS---SFQQKEATPGGRIREK 1578
>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
sapiens]
Length = 1379
Score = 38.9 bits (89), Expect = 0.013
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 100 GAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGE-----DDKPL 154
G YE + R W V L PG + + R HYER+V PY + G + +P
Sbjct: 56 GGYEAICKDRRWARVAQRLNYPPGK-NIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPF 114
Query: 155 PTSKPRKQYK 164
+ K+YK
Sbjct: 115 DNEEKDKEYK 124
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 38.5 bits (88), Expect = 0.018
Identities = 46/179 (25%), Positives = 65/179 (36%), Gaps = 16/179 (8%)
Query: 149 EDDKPLPTSK-PRKQYKMAKENRGDDGATERPKKAKEERRMDQMMPGKTKADAADPAPLP 207
E PLP S P + + + + + E+P ++ + Q G + A PAPL
Sbjct: 1328 ESSPPLPLSSLPPEASQDSAPYKDQLSSKEQPSFLASQQLLSQA--GPSNPPGAPPAPLA 1385
Query: 208 SQEPPRNSTEQQGLASGSSVSFVGASGCPEAYKRLLSSFYCKGT-HGIMSPLAKKKLLAQ 266
PP + Q G A +S PE S GT G+ S L + LA+
Sbjct: 1386 PSSPPVTALPQDGAAPATST-------MPEPASGTASQAGGPGTPQGLTSELETSQPLAE 1438
Query: 267 VSK----VEALQCQEEGCRHGAEPQASPAVHLPESPQSPKGLTENSRHRLTPQEGLQAP 321
+ V+ L C E ++ P P P E S H TPQ L P
Sbjct: 1439 THEAPLAVQPLVVGLAPCTPAPEAASTRDASAPREPLPPPA-PEPSPHSGTPQPALGQP 1496
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 38.1 bits (87), Expect = 0.023
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 15/149 (10%)
Query: 191 MMPGKTKADAADPAPLPSQEPPRNSTEQQGLASGSSVSFVGASGCPEAYKRLLSSFYCKG 250
M P A+ A P P P E P +S L S S +G PE S
Sbjct: 543 MQPPAPPAELAAPLPSPLPEQPLDSPAAPAL----SPSGLGLQPGPERTSTTKSKE---- 594
Query: 251 THGIMSPLAKKKLLAQVSKVEALQCQEEGCRHGAEPQASPAVHLPESPQSPKGLTENSRH 310
+SP + +K S+ A + G + GA+P ASP+ P + QSP L + S+
Sbjct: 595 ----LSPGSAQKGSPGSSQGTACAGTQPGAQPGAQPGASPSPSQPPADQSPHTLRKVSKK 650
Query: 311 --RLTPQEGLQAPGGSLREEAQAGPCPAA 337
+ P+ P G++ +++ P P +
Sbjct: 651 LAPIPPKVPFGQP-GAMADQSAGQPSPVS 678
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,432,566
Number of Sequences: 37866
Number of extensions: 1828138
Number of successful extensions: 8702
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 8298
Number of HSP's gapped (non-prelim): 568
length of query: 594
length of database: 18,247,518
effective HSP length: 108
effective length of query: 486
effective length of database: 14,157,990
effective search space: 6880783140
effective search space used: 6880783140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.