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Search of human proteins with 46409434
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46409434 hypothetical protein LOC388759 [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46409434 hypothetical protein LOC388759 [Homo sapiens] 494 e-140
gi|33286436 gametogenetin [Homo sapiens] 50 2e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 49 4e-06
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 48 8e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 48 8e-06
gi|113419362 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-05
gi|113418886 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-05
gi|113419893 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 9e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 9e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 9e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 44 9e-05
gi|61966741 TMF regulated nuclear protein [Homo sapiens] 44 9e-05
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 44 9e-05
gi|13273315 homeobox B4 [Homo sapiens] 44 9e-05
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 44 9e-05
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 44 1e-04
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 44 1e-04
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 43 2e-04
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 43 2e-04
gi|5803080 macrophage receptor with collagenous structure [Homo ... 43 2e-04
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 43 2e-04
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 43 3e-04
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 43 3e-04
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 43 3e-04
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 43 3e-04
gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens] 43 3e-04
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 43 3e-04
gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens] 43 3e-04
>gi|46409434 hypothetical protein LOC388759 [Homo sapiens]
Length = 237
Score = 494 bits (1273), Expect = e-140
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MGLCTLQPLGPPRKSSTSCGTWTASGLPSLGHLPRRLRLAFDFLEPRARGQRGGSGGCQS 60
MGLCTLQPLGPPRKSSTSCGTWTASGLPSLGHLPRRLRLAFDFLEPRARGQRGGSGGCQS
Sbjct: 1 MGLCTLQPLGPPRKSSTSCGTWTASGLPSLGHLPRRLRLAFDFLEPRARGQRGGSGGCQS 60
Query: 61 TRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLRCASSDRS 120
TRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLRCASSDRS
Sbjct: 61 TRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLRCASSDRS 120
Query: 121 LREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQA 180
LREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQA
Sbjct: 121 LREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQA 180
Query: 181 AVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAANFPERERL 237
AVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAANFPERERL
Sbjct: 181 AVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAANFPERERL 237
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 49.7 bits (117), Expect = 2e-06
Identities = 35/101 (34%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 133 PTPSPAPPPAGPRPSPGSLGPSAPAAP-----------RTARGAYELQGGASQDGPGQAA 181
P PSPAP P PSP P+ AAP R ARGA + G DGP + A
Sbjct: 494 PAPSPAPAPTVAEPSPPVSAPAPAAAPIKTRTRRNKGSRAARGATR-KDGLHGDGPRERA 552
Query: 182 VGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEV 222
P + G GG G G+ +T + R LP +V
Sbjct: 553 TATVPDSSGGGGG-----GSGASQTGAANTRAARHWLPFQV 588
Score = 28.9 bits (63), Expect = 4.1
Identities = 32/125 (25%), Positives = 37/125 (29%), Gaps = 20/125 (16%)
Query: 48 ARGQRGGSGGCQS--TRAAERTRPPHPPNAVLLLQPEPSLTWAQGR-GCRGHFRSLPAAA 104
A G G GC + A + R PP +P W G HFR A
Sbjct: 312 AEGGDGDGEGCSGPPSAPASQARALPPPPYTTFPGSKPKFDWVSAPDGPERHFRFNGAGG 371
Query: 105 SRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAP-----PPAGPRPSPGSLGPSAPAAP 159
R A S GP +P P P P RP+P L P P
Sbjct: 372 GIGAPRRRAAALS------------GPWGSPPPPPEQIHSAPGPRRPAPALLAPPTFIFP 419
Query: 160 RTARG 164
G
Sbjct: 420 APTNG 424
Score = 28.5 bits (62), Expect = 5.3
Identities = 37/143 (25%), Positives = 48/143 (33%), Gaps = 36/143 (25%)
Query: 119 RSLREQKQRRAGPDPTPSPAPPPAGPR--------------------------PSPGSLG 152
R L E R G P+ P PP PR P P
Sbjct: 123 RRLLEASHRGQGDPPSLRPLKPPPPPRQLSVKDTVPRAPSQFPPPLETWKPPPPLPSERQ 182
Query: 153 PS----APAAPRTARGAYELQGGASQDG--PGQAAVGATPTTGPGTGGEGALLGCGSGRT 206
P+ PA A E Q G G G+A GA P G G + A SG +
Sbjct: 183 PADRRITPALATPASPPTESQAGPRNQGQTAGRARGGAPPHAGEGEMAQPA--DSESGLS 240
Query: 207 PPTSATWRRRLLPAEVPPGAAAA 229
T++ R P+ PP A+++
Sbjct: 241 LLCKITFKSR--PSLAPPAASSS 261
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 48.9 bits (115), Expect = 4e-06
Identities = 67/233 (28%), Positives = 82/233 (35%), Gaps = 46/233 (19%)
Query: 8 PLGPPRKSSTSCGTWTASGL------PSLGHLPRRLRLAFDFLEPRARGQRGGSG----- 56
P GPP + G SGL P + LP R + P RG+RG G
Sbjct: 2013 PQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQ 2072
Query: 57 GCQSTRAAERTR-PPHPPNA-VLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLRC 114
G T PP PP V + +P P L+ QG L A GS +
Sbjct: 2073 GRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPP------GLKGAKGEPGSNGDQG 2126
Query: 115 ASSDRSLREQKQRRAGPDPT----------------PSPAPPPAGPRPSPGSLG----PS 154
DR + K R P P P P GPR PG +G P
Sbjct: 2127 PKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPG 2186
Query: 155 APAAPRTA-----RGAYELQGGASQDG-PGQAAVGATPTTG-PGTGGEGALLG 200
P AP A +G L+G + G PG+ G T G PG G L+G
Sbjct: 2187 PPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVG 2239
Score = 40.4 bits (93), Expect = 0.001
Identities = 59/205 (28%), Positives = 73/205 (35%), Gaps = 23/205 (11%)
Query: 2 GLCTLQPLGPPRKSSTSCGTWTASGLPSLGHLP--RRLRLAFDFLEPRA-RGQRGGSGGC 58
GL L+ L P+ + G G P +P R + F+ PR +G+RG G C
Sbjct: 2575 GLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGAC 2634
Query: 59 QSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGR-GCRGHFRSLPAAASRSGSRTLRCASS 117
PP P L +G G G +P + G L
Sbjct: 2635 GLDGEKGDKGEAGPPG-------RPGLAGHKGEMGEPG----VPGQSGAPGKEGLIGPKG 2683
Query: 118 DRSLREQK-----QRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGA 172
DR Q Q G TP P GP + GS GP P RG LQG
Sbjct: 2684 DRGFDGQPGPKGDQGEKGERGTPGIGGFP-GPSGNDGSAGPPGPPGSVGPRGPEGLQGQK 2742
Query: 173 SQDG-PGQAAVGATPTTG-PGTGGE 195
+ G PG+ VGA G PG GE
Sbjct: 2743 GERGPPGERVVGAPGVPGAPGERGE 2767
Score = 40.0 bits (92), Expect = 0.002
Identities = 44/155 (28%), Positives = 53/155 (34%), Gaps = 26/155 (16%)
Query: 48 ARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRS 107
A+G+RG G + R P P A P L + G LP
Sbjct: 1294 AKGERGFPGADGRPGSPGRAGNPGTPGA-------PGLKGSPG---------LPGPRGDP 1337
Query: 108 GSRTLRCASSDRSLREQKQRRAGP-------DPTPSPAPPPAGPRPSPGSLGPSAPAAPR 160
G R R + Q GP DP PS P P GP PG GP P P
Sbjct: 1338 GERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGP--PGLPG 1395
Query: 161 TA-RGAYELQGGASQDGPGQAAVGATPTTGPGTGG 194
TA +G +G GPG+ + PG G
Sbjct: 1396 TAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPG 1430
Score = 35.0 bits (79), Expect = 0.057
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 9/104 (8%)
Query: 98 RSLPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPA 157
R LP A R G++ + +K P P AGP+ G +GP+ P
Sbjct: 1506 RGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGP- 1564
Query: 158 APRTARGAYELQGGASQDGPGQAAVG-ATPTTGPGTGGEGALLG 200
RGA +QG + PG G P PG G L G
Sbjct: 1565 -----RGATGVQG--ERGPPGLVLPGDPGPKGDPGDRGPIGLTG 1601
Score = 33.9 bits (76), Expect = 0.13
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 128 RAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPT 187
RAGP P + PP G + PG GP P PR G E+ + PG +
Sbjct: 1602 RAGP---PGDSGPP-GEKGDPGRPGPPGPVGPRGRDG--EVGEKGDEGPPGDPGL----- 1650
Query: 188 TGPGTGGEGALLGCGSGRTP 207
PG GE L G R P
Sbjct: 1651 --PGKAGERGLRGAPGVRGP 1668
Score = 31.6 bits (70), Expect = 0.63
Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 23/92 (25%)
Query: 131 PDPTPSPAPPPAGPRPSPGSL---------------------GPSAPAAPRTARGAYELQ 169
P P P P P G + PG + GP P TA+G
Sbjct: 1242 PRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFP 1301
Query: 170 GGASQDG-PGQAAVGATPTTGPGTGGEGALLG 200
G + G PG+A TP PG G L G
Sbjct: 1302 GADGRPGSPGRAGNPGTP-GAPGLKGSPGLPG 1332
Score = 30.4 bits (67), Expect = 1.4
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 22/83 (26%)
Query: 129 AGPDPTPSPAPPPAGPRPSPGSLGPSAPA--------------APRTARGAYELQGGASQ 174
AGP P P P GP PGS+GP + PR RG ++G +
Sbjct: 2427 AGP-PGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRG---E 2482
Query: 175 DG-PGQAAVGATPTTG-PGTGGE 195
DG PGQ G TG PG+ GE
Sbjct: 2483 DGRPGQE--GPRGLTGPPGSRGE 2503
Score = 29.6 bits (65), Expect = 2.4
Identities = 18/62 (29%), Positives = 22/62 (35%)
Query: 139 PPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGAL 198
P P G G GP PA R G G +GP PG G+ A+
Sbjct: 1485 PGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAV 1544
Query: 199 LG 200
+G
Sbjct: 1545 VG 1546
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 141 PAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGE 195
P GP+ PG GP A + RG L G + DG AA + P G G+
Sbjct: 1753 PPGPQGDPGVRGP---AGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGD 1804
Score = 29.3 bits (64), Expect = 3.1
Identities = 50/183 (27%), Positives = 60/183 (32%), Gaps = 27/183 (14%)
Query: 45 EPRARGQRG-----GSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRS 99
+P +G RG G G A P P L+ EP T GRG G +
Sbjct: 2166 KPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGA 2225
Query: 100 --LPAAASRSG--------------SRTLRCASSDRSLREQKQRRAGPDPTP-SPA-PPP 141
LP SG T + + R K G P SP P P
Sbjct: 2226 VGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGP 2285
Query: 142 AGPRPSPGSLGPSAPAAPRT--ARGAYELQGGASQDGPGQ-AAVGATPTTGP-GTGGEGA 197
GP+ PG G A A+G GG + D G+ A G GP G GE
Sbjct: 2286 VGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAG 2345
Query: 198 LLG 200
G
Sbjct: 2346 RAG 2348
Score = 28.5 bits (62), Expect = 5.3
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 138 APPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDG-PGQAAVGATPTTGPGTGGEG 196
AP G PGS GP P P +G + G S+DG PG +P G G
Sbjct: 1419 APGEPGLPGLPGSPGPQGPVGPPGKKG----EKGDSEDGAPGLPGQPGSPGEQGPRGPPG 1474
Query: 197 AL 198
A+
Sbjct: 1475 AI 1476
Score = 28.5 bits (62), Expect = 5.3
Identities = 29/85 (34%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 141 PAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGP-------GTG 193
P G R +PG LGP P L G PGQ G TGP G+
Sbjct: 1873 PKGERGAPGILGPQGPPG---------LPGPVGP--PGQGFPGVPGGTGPKGDRGETGSK 1921
Query: 194 GEGALLGCGSGRTPPTSATWRRRLL 218
GE L G R P S RLL
Sbjct: 1922 GEQGLPGERGLRGEPGSVPNVDRLL 1946
Score = 27.7 bits (60), Expect = 9.0
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 91 RGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRAGPD-PTPSPAPPPAGPRPSPG 149
RG RG S+P + ++ AS+ R + E +G P P P G G
Sbjct: 1930 RGLRGEPGSVPNVDRLLETAGIK-ASALREIVETWDESSGSFLPVPERRRGPKGDSGEQG 1988
Query: 150 SLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGP-GTGGE 195
G P RG +G GP A+G GP G GE
Sbjct: 1989 PPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGE 2035
Score = 27.7 bits (60), Expect = 9.0
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 130 GPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTG 189
GP A PP G PG LGP P GA L+G + PG G G
Sbjct: 2419 GPSGERGLAGPP-GREGIPGPLGPPGPPGSVGPPGASGLKG--DKGDPGVGLPGPRGERG 2475
Query: 190 -PGTGGE 195
PG GE
Sbjct: 2476 EPGIRGE 2482
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 47.8 bits (112), Expect = 8e-06
Identities = 42/123 (34%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 129 AGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDG------------ 176
A P P P GP P PG GP P A + A G EL+ GA G
Sbjct: 2 ASAPPASPPGSEPPGPDPEPG--GPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPA 59
Query: 177 PGQAA-VGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPG-AAAANFPER 234
PG AA GA + GP G EG G PP S + P PG + A PE
Sbjct: 60 PGAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPEL 119
Query: 235 ERL 237
+ L
Sbjct: 120 DPL 122
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 47.8 bits (112), Expect = 8e-06
Identities = 55/196 (28%), Positives = 69/196 (35%), Gaps = 36/196 (18%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRP-----PHPPNAVLLLQPEPSLTWAQGRGCRGHFRSL 100
P A R G GG Q RP P PP A L PE G G +
Sbjct: 90 PPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPE---------GSAGSCAPV 140
Query: 101 PAAAS-RSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAP 159
PAAA+ +G + + RAGP P P P GP P PG P+ P A
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP-----GPGPGPGPGKPAGPGAA 195
Query: 160 RTARGAYELQGGASQDGPGQAAVGATPTT---GPGTGGEGALLGCGSGRTPPTSATWRRR 216
+T G+ L P + V P P G ++ +TPP
Sbjct: 196 QTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVI-----QTPP-------- 242
Query: 217 LLPAEVPPGAAAANFP 232
+ A PP AA + P
Sbjct: 243 FVGAAAPPAPAAPSPP 258
Score = 43.5 bits (101), Expect = 2e-04
Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 129 AGPDPT-PSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPT 187
A P P P+ APPP P P+ + P PA P TA A A G + GA P
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG----SAGAAPA 314
Query: 188 TGPGTGGEGALLG------CGSGRTPPTSATWRRRLLPAEVPPGA 226
P GG + G + P A +R++ A PP A
Sbjct: 315 PAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQA-APPAA 358
Score = 33.5 bits (75), Expect = 0.16
Identities = 30/97 (30%), Positives = 32/97 (32%), Gaps = 23/97 (23%)
Query: 133 PTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAY---------------ELQGGASQDGP 177
P +P PPPAG R PG GP P P R E G+ P
Sbjct: 83 PGAAPEPPPAG-RARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVP 141
Query: 178 GQAAVGATPTTGP-------GTGGEGALLGCGSGRTP 207
AAV A P P G A G G G P
Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP 178
Score = 30.4 bits (67), Expect = 1.4
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 153 PSAPAAPRTARGAYELQG---GASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPT 209
P AA A G + + G GA+ GP A GA P P G G G P
Sbjct: 48 PEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGA-PGAAPEPPPAGRARPGGGGPQRPG 106
Query: 210 SATWRRRLLPAEVPPGAAAANFP 232
+ RR L+PA P AA P
Sbjct: 107 PPSPRRPLVPAGPAPPAAKLRPP 129
Score = 30.0 bits (66), Expect = 1.8
Identities = 34/106 (32%), Positives = 35/106 (33%), Gaps = 35/106 (33%)
Query: 133 PTPSPA--------PPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGA 184
P P PA PP G P PS PAAP A AA
Sbjct: 227 PLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPA---------------APAAAPP 271
Query: 185 TPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAAN 230
P P T G PPT+A PA VPP AAA N
Sbjct: 272 PPPPAPATLARPP----GHPAGPPTAA-------PA-VPPPAAAQN 305
Score = 28.1 bits (61), Expect = 6.9
Identities = 32/117 (27%), Positives = 40/117 (34%), Gaps = 21/117 (17%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAAS 105
P A Q GGS G AA P A + QP P A P +
Sbjct: 299 PPAAAQNGGSAG-----AAPAPAPAAGGPAGVSGQPGPGAAAAA---------PAPGVKA 344
Query: 106 RSGSRTLRCASSDRSLREQKQRRAGPDPTPSP---APPPAGPRPSPGSLGPSAPAAP 159
S R ++ A Q +GP T + P G PSP ++ P AP P
Sbjct: 345 ESPKRVVQAAPP----AAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTP 397
>gi|113419362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 45.1 bits (105), Expect = 5e-05
Identities = 35/93 (37%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 137 PAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEG 196
PAPPP GPRP P S P + G+ L A GPG+AA A G G
Sbjct: 3 PAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALSGGPGRAAGSAI--------GRG 54
Query: 197 ALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAA 229
A L S PP + RR +L + PG AA
Sbjct: 55 AHL---SPSRPPAAPPPRREVLSS---PGCCAA 81
>gi|113418886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 45.1 bits (105), Expect = 5e-05
Identities = 35/93 (37%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 137 PAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEG 196
PAPPP GPRP P S P + G+ L A GPG+AA A G G
Sbjct: 3 PAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALSGGPGRAAGSAI--------GRG 54
Query: 197 ALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAA 229
A L S PP + RR +L + PG AA
Sbjct: 55 AHL---SPSRPPAAPPPRREVLSS---PGCCAA 81
>gi|113419893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 45.1 bits (105), Expect = 5e-05
Identities = 35/93 (37%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 137 PAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEG 196
PAPPP GPRP P S P + G+ L A GPG+AA A G G
Sbjct: 3 PAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALSGGPGRAAGSAI--------GRG 54
Query: 197 ALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAA 229
A L S PP + RR +L + PG AA
Sbjct: 55 AHL---SPSRPPAAPPPRREVLSS---PGCCAA 81
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 44.3 bits (103), Expect = 9e-05
Identities = 57/195 (29%), Positives = 69/195 (35%), Gaps = 45/195 (23%)
Query: 10 GPPRKSSTSCGTWTASGLPSLGHLPRRLRLAFDFLEPRARGQRGGSGGCQSTRAAERTRP 69
GPP G A GLP LP +G RG SG + A P
Sbjct: 245 GPP-------GPQGARGLPGTAGLPGM------------KGHRGFSGLDGAKGDAGPAGP 285
Query: 70 PHPPNAVLLLQPEPSLTWAQG----RGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQK 125
P + P A G RG G R P A +G+R A+
Sbjct: 286 KGEPGS-------PGENGAPGQMGPRGLPGE-RGRPGAPGPAGARGNDGATG-------- 329
Query: 126 QRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGAT 185
AGP P P P AGP PG++G A P+ RG+ QG + GP A A
Sbjct: 330 --AAGP---PGPTGP-AGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAG 383
Query: 186 PTTGPGTGGEGALLG 200
P PG G+ G
Sbjct: 384 PAGNPGADGQPGAKG 398
Score = 42.0 bits (97), Expect = 5e-04
Identities = 48/167 (28%), Positives = 56/167 (33%), Gaps = 14/167 (8%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQG-RGCRGHFRSLPAAA 104
P G RG +G + A P P + Q P L G RG G LP
Sbjct: 691 PGPAGPRGANGAPGNDGAKGDAGAPGAPGS----QGAPGLQGMPGERGAAG----LPGPK 742
Query: 105 SRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARG 164
G + A ++ + GP P PA P G GPS PA P ARG
Sbjct: 743 GDRGDAGPKGADGSPG-KDGVRGLTGPIGPPGPAGAPG----DKGESGPSGPAGPTGARG 797
Query: 165 AYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSA 211
A +G GP A PG GE G PP A
Sbjct: 798 APGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA 844
Score = 39.7 bits (91), Expect = 0.002
Identities = 47/189 (24%), Positives = 60/189 (31%), Gaps = 33/189 (17%)
Query: 45 EPRARGQRGGSG-----GCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQG-RGCRGH-- 96
+P A+G G G G R + P P EP ++G G +G
Sbjct: 393 QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPG 452
Query: 97 ---FRSLPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSP---------------- 137
+ P A G R R L R GP P
Sbjct: 453 PVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERG 512
Query: 138 APPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDG----PGQAAVGAT--PTTGPG 191
+P PAGP+ SPG G A A+G G DG PG A P PG
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPG 572
Query: 192 TGGEGALLG 200
G+ ++G
Sbjct: 573 ARGQAGVMG 581
Score = 38.9 bits (89), Expect = 0.004
Identities = 54/194 (27%), Positives = 61/194 (31%), Gaps = 33/194 (17%)
Query: 46 PRARGQRG--------GSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHF 97
P RG+RG G G Q A R P P P L G R
Sbjct: 964 PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMG------PPGLAGPPGESGREGA 1017
Query: 98 RSLPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSP--APPPAGPRPSPGSLGPSA 155
+ R GS A DR + AGP P AP P GP G G +
Sbjct: 1018 PGAEGSPGRDGSPG---AKGDRG----ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETG 1070
Query: 156 PAAPRTARGAYELQGGASQDGPGQAAVGATPTTGP-GTGGEGALLGCGSGRTPPTSATWR 214
PA P G +G A GP + G T G G G G PP S
Sbjct: 1071 PAGPAGPVGPVGARGPAGPQGP-RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGS---- 1125
Query: 215 RRLLPAEVPPGAAA 228
P E P A+
Sbjct: 1126 ----PGEQGPSGAS 1135
Score = 35.8 bits (81), Expect = 0.033
Identities = 54/211 (25%), Positives = 65/211 (30%), Gaps = 50/211 (23%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHF-----RSL 100
P A GQ G G A PP P P ++ +G RG
Sbjct: 817 PGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGF 876
Query: 101 PAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPP-PAGPRPS------------ 147
P AA R G P P+ + PP P GP
Sbjct: 877 PGAAGRVGP---------------------PGPSGNAGPPGPPGPAGKEGGKGPRGETGP 915
Query: 148 ---PGSLGPSAPAAPRTARGAYELQGGASQDG-PG-QAAVGATPTTG-PGTGGEGALLGC 201
PG +GP P P +G+ G A G PG Q G G PG GE G
Sbjct: 916 AGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGL 975
Query: 202 GS-----GRTPPTSATWRRRLLPAEVPPGAA 227
G+ P+ A+ R PPG A
Sbjct: 976 PGPSGEPGKQGPSGASGERGPPGPMGPPGLA 1006
Score = 33.9 bits (76), Expect = 0.13
Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 141 PAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLG 200
P GP SPG GPS + P RG G +DG P G G+ +G
Sbjct: 1119 PPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVG 1178
Query: 201 CGSGRTPPTSATWRRRLLPAEVPPGAAAANF 231
PP PPG +A F
Sbjct: 1179 PPGPPGPPG-------------PPGPPSAGF 1196
Score = 33.1 bits (74), Expect = 0.22
Identities = 35/104 (33%), Positives = 37/104 (35%), Gaps = 19/104 (18%)
Query: 133 PTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDG----PGQAAVGATPTT 188
P P A PAG G+ GP PA P RG QG A G PG P
Sbjct: 601 PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGE---QGPAGSPGFQGLPG-------PAG 650
Query: 189 GPGTGGEGALLGC-GSGRTPPTSATWRRRLLPAE----VPPGAA 227
PG G+ G G P S R P E PPG A
Sbjct: 651 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPA 694
Score = 31.2 bits (69), Expect = 0.82
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 129 AGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDG-PGQAAV----G 183
AGP P + P G R PG GP+ A P GA G +G PG A G
Sbjct: 355 AGPQG-PRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPG 413
Query: 184 ATPTTGP-GTGG 194
A +GP G GG
Sbjct: 414 ARGPSGPQGPGG 425
Score = 31.2 bits (69), Expect = 0.82
Identities = 24/60 (40%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 135 PSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGG 194
PS A PAGPR PGS G AP G L G GP A P PG G
Sbjct: 1131 PSGASGPAGPRGPPGSAG--APGKD----GLNGLPGPIGPPGPRGRTGDAGPVGPPGPPG 1184
Score = 30.8 bits (68), Expect = 1.1
Identities = 26/72 (36%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 133 PTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTG--- 189
P PS A G G GP PA PR A GA GA D A G+ G
Sbjct: 670 PGPSGARGERGFPGERGVQGPPGPAGPRGANGA-PGNDGAKGDAGAPGAPGSQGAPGLQG 728
Query: 190 -PGTGGEGALLG 200
PG G L G
Sbjct: 729 MPGERGAAGLPG 740
Score = 30.4 bits (67), Expect = 1.4
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 130 GPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTG 189
GPD P P PAG PG GP G +G A + PG+A P
Sbjct: 548 GPDGKTGP-PGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGE--PGKAGERGVPGP- 603
Query: 190 PGTGGEGALLGCGSGRTPPTSA 211
PG G G + PP A
Sbjct: 604 PGAVGPAGKDGEAGAQGPPGPA 625
Score = 30.0 bits (66), Expect = 1.8
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 129 AGPDPTPSP--APPP---AGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDG-PGQAAV 182
+GP P P AP P GP PG G S P PR G G + G PG+
Sbjct: 184 SGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGE 243
Query: 183 GATPTTG-----PGTGGEGALLG 200
P PGT G + G
Sbjct: 244 RGPPGPQGARGLPGTAGLPGMKG 266
Score = 28.9 bits (63), Expect = 4.1
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 129 AGP-DPTPSPAPP-------PAGPRPSPGSLGPSAPAAPRTARGAYEL------QGGASQ 174
+GP P P PP AG PG GP P R G L +G +
Sbjct: 214 SGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGL 273
Query: 175 DGPGQAAVGATPTTGPGTGGEGALLG 200
DG A A P PG+ GE G
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPG 299
Score = 28.9 bits (63), Expect = 4.1
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 129 AGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTT 188
AGP P A PAGP+ G G + R +G G Q PG P
Sbjct: 1075 AGP-VGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG--LQGPPG-------PPG 1124
Query: 189 GPGTGGEGALLGCGSGRTPPTSA 211
PG G G R PP SA
Sbjct: 1125 SPGEQGPSGASGPAGPRGPPGSA 1147
Score = 28.5 bits (62), Expect = 5.3
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 133 PTPSPAPPPA---GPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGP-GQAAVGATPTT 188
P P+ P A G + PG LG P+ R RG +G GP G P
Sbjct: 646 PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAP-- 703
Query: 189 GPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAANFPERER 236
G +GA G+ P + + +P E GAA P+ +R
Sbjct: 704 ----GNDGAKGDAGAPGAPGSQGAPGLQGMPGE--RGAAGLPGPKGDR 745
Score = 28.1 bits (61), Expect = 6.9
Identities = 43/180 (23%), Positives = 49/180 (27%), Gaps = 19/180 (10%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAAS 105
P G+RGG G + A+ P P + G R LP A
Sbjct: 481 PGPPGERGGPGS-RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKG 539
Query: 106 RSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPA--------------GPRPSPGSL 151
+GS S + AG D P P PP G PG
Sbjct: 540 LTGSP----GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA 595
Query: 152 GPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSA 211
G P A G G A GP A A G G G PP A
Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEA 655
Score = 28.1 bits (61), Expect = 6.9
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 130 GPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTG 189
GP P P +P GP + G GP P A G L G GP G T G
Sbjct: 1118 GP-PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGP-PGPRGRTGDAG 1175
Query: 190 P 190
P
Sbjct: 1176 P 1176
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 44.3 bits (103), Expect = 9e-05
Identities = 56/195 (28%), Positives = 75/195 (38%), Gaps = 37/195 (18%)
Query: 69 PPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSL------PAAASRSGSRTL-------RCA 115
PP PP + L P T G +L P SRS S TL +
Sbjct: 574 PPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSS 633
Query: 116 SSDRSLREQKQRRAGPDPTPSPAPPP----AGPRPSPGSLGPSAPAAPRTARGA----YE 167
S+ + E + +GP+ + +PPP A P+ S GP+ P A R A GA
Sbjct: 634 SATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPP 693
Query: 168 LQGGASQDG-----PGQAAVGATPTTG-------PGTGGEGALLGCGSGRTPPTSATWRR 215
G S DG + ATP G PGT G A G G+G S+ +
Sbjct: 694 ATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAG----ASSRSPK 749
Query: 216 RLLPAEVPPGAAAAN 230
+ E+P GA A+
Sbjct: 750 QARLGELPLGALQAS 764
Score = 40.8 bits (94), Expect = 0.001
Identities = 51/172 (29%), Positives = 66/172 (38%), Gaps = 16/172 (9%)
Query: 62 RAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRS-LPAAASRSGSRTLRCASSDRS 120
RA+ TRP L + E ++ A+G+ RS L A A R S S
Sbjct: 119 RASGTTRPGPLGQKGLRISAEETV--ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAM 176
Query: 121 LREQKQRRAG-----PDPTPS--PAPPPAGPRPSPGSLGPSAPAAPR-TARGAYELQGGA 172
R + R AG P P PS P PP GPR S S + P AR GG
Sbjct: 177 AR--RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGL 234
Query: 173 SQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPP 224
+ + ATP + P G A G+ R P + + + L A PP
Sbjct: 235 QRPASRSLSSSATPLSSPARSGPSAR---GTPRAPAHPSQPKPKGLQALRPP 283
Score = 31.6 bits (70), Expect = 0.63
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 131 PDPTP---SPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPT 187
P P+P +P PPA P SP + PS A P A ++ P + P
Sbjct: 442 PPPSPPVQAPFSPPASPPVSPSATPPS-QAPPSLAAPPLQVPPSPPASPPMSPSATPPPQ 500
Query: 188 TGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAANFP 232
P L + PP AT + LP+ PP A+FP
Sbjct: 501 APPPLAAPPLQLAKPPPQAPPALATPPLQALPS--PP----ASFP 539
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 18/87 (20%)
Query: 140 PPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALL 199
PP PRP P P PAA R A AVG P G GA +
Sbjct: 29 PPGSPRPPP----PVTPAALRVLGAA--------------GAVGRKPLAERAGGIGGATI 70
Query: 200 GCGSGRTPPTSATWRRRLLPAEVPPGA 226
+ R PT + PA PP +
Sbjct: 71 PESAPRAGPTRSAGTSSRNPASRPPAS 97
Score = 29.3 bits (64), Expect = 3.1
Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 133 PTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGT 192
P +P PPA P SP L +P AP A + LQ S +P P
Sbjct: 404 PLQAPPSPPASPPLSP--LATPSPQAP-NALAVHLLQAPFSPPPSPPVQAPFSPPASPPV 460
Query: 193 GGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAA 229
TPP+ A P +VPP A+
Sbjct: 461 ---------SPSATPPSQAPPSLAAPPLQVPPSPPAS 488
Score = 27.7 bits (60), Expect = 9.0
Identities = 45/164 (27%), Positives = 60/164 (36%), Gaps = 29/164 (17%)
Query: 70 PHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTL--RCASSDRSLREQKQR 127
P PP + +P P +T A R + AA G + L R + +
Sbjct: 27 PRPPGSP---RPPPPVTPAALR--------VLGAAGAVGRKPLAERAGGIGGATIPESAP 75
Query: 128 RAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQG---GASQDGP-GQAA-- 181
RAGP + + RP G AP A T+ G G G ++ GP GQ
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLR 135
Query: 182 VGATPTTGPGTGGEG---ALLGCG-----SGRTP--PTSATWRR 215
+ A T G E + L G SG TP P+ A RR
Sbjct: 136 ISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARR 179
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 44.3 bits (103), Expect = 9e-05
Identities = 56/195 (28%), Positives = 75/195 (38%), Gaps = 37/195 (18%)
Query: 69 PPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSL------PAAASRSGSRTL-------RCA 115
PP PP + L P T G +L P SRS S TL +
Sbjct: 843 PPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSS 902
Query: 116 SSDRSLREQKQRRAGPDPTPSPAPPP----AGPRPSPGSLGPSAPAAPRTARGA----YE 167
S+ + E + +GP+ + +PPP A P+ S GP+ P A R A GA
Sbjct: 903 SATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPP 962
Query: 168 LQGGASQDG-----PGQAAVGATPTTG-------PGTGGEGALLGCGSGRTPPTSATWRR 215
G S DG + ATP G PGT G A G G+G S+ +
Sbjct: 963 ATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAG----ASSRSPK 1018
Query: 216 RLLPAEVPPGAAAAN 230
+ E+P GA A+
Sbjct: 1019 QARLGELPLGALQAS 1033
Score = 40.8 bits (94), Expect = 0.001
Identities = 51/172 (29%), Positives = 66/172 (38%), Gaps = 16/172 (9%)
Query: 62 RAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRS-LPAAASRSGSRTLRCASSDRS 120
RA+ TRP L + E ++ A+G+ RS L A A R S S
Sbjct: 119 RASGTTRPGPLGQKGLRISAEETV--ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAM 176
Query: 121 LREQKQRRAG-----PDPTPS--PAPPPAGPRPSPGSLGPSAPAAPR-TARGAYELQGGA 172
R + R AG P P PS P PP GPR S S + P AR GG
Sbjct: 177 AR--RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGL 234
Query: 173 SQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPP 224
+ + ATP + P G A G+ R P + + + L A PP
Sbjct: 235 QRPASRSLSSSATPLSSPARSGPSAR---GTPRAPAHPSQPKPKGLQALRPP 283
Score = 30.4 bits (67), Expect = 1.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 129 AGPDPTPSPAPPPAGPRP---SPGSLGPSAPAAP 159
A P +PS PPP P P P + PS PA+P
Sbjct: 712 ASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASP 745
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 18/87 (20%)
Query: 140 PPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALL 199
PP PRP P P PAA R A AVG P G GA +
Sbjct: 29 PPGSPRPPP----PVTPAALRVLGAA--------------GAVGRKPLAERAGGIGGATI 70
Query: 200 GCGSGRTPPTSATWRRRLLPAEVPPGA 226
+ R PT + PA PP +
Sbjct: 71 PESAPRAGPTRSAGTSSRNPASRPPAS 97
Score = 29.3 bits (64), Expect = 3.1
Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 133 PTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGT 192
P +P PPA P SP L +P AP A + LQ S +P P
Sbjct: 629 PLQAPPSPPASPPLSP--LATPSPQAP-NALAVHLLQAPFSPPPSPPVQAPFSPPASPPV 685
Query: 193 GGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAA 229
TPP+ A P +VPP A+
Sbjct: 686 ---------SPSATPPSQAPPSLAAPPLQVPPSPPAS 713
Score = 28.5 bits (62), Expect = 5.3
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 131 PDPTP---SPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPT 187
P P+P +P PPA P SP + PS A P A ++ P + P
Sbjct: 667 PPPSPPVQAPFSPPASPPVSPSATPPS-QAPPSLAAPPLQVPPSPPASPPMSPSATPPPQ 725
Query: 188 TGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAA 228
P + +PP S + P VPP AA
Sbjct: 726 APPPLAAPPLQVPPSPPASPPMSPS---ATPPPRVPPLLAA 763
Score = 28.5 bits (62), Expect = 5.3
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 129 AGPDPTPSPAPPPAGP---RPSPGSLGPSAPAA-PRTARGAYELQGGASQDGPGQAAVGA 184
A P +PS PPP P P + PS PA+ P + Q + P A+ +
Sbjct: 743 ASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPS 802
Query: 185 TPTTGPGTG--GEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAA 229
P + PG A L TPP A +VPP A+
Sbjct: 803 PPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPAS 849
Score = 28.1 bits (61), Expect = 6.9
Identities = 29/117 (24%), Positives = 37/117 (31%), Gaps = 3/117 (2%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAA- 104
P + R G + RA P P L P+ + G S P A
Sbjct: 248 PLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATP 307
Query: 105 SRSGSRTLRCASSDRSLREQKQRRAGPDP--TPSPAPPPAGPRPSPGSLGPSAPAAP 159
S SG++ D + P TP P PP+ P PS PA P
Sbjct: 308 SPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATP 364
Score = 27.7 bits (60), Expect = 9.0
Identities = 45/164 (27%), Positives = 60/164 (36%), Gaps = 29/164 (17%)
Query: 70 PHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTL--RCASSDRSLREQKQR 127
P PP + +P P +T A R + AA G + L R + +
Sbjct: 27 PRPPGSP---RPPPPVTPAALR--------VLGAAGAVGRKPLAERAGGIGGATIPESAP 75
Query: 128 RAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQG---GASQDGP-GQAA-- 181
RAGP + + RP G AP A T+ G G G ++ GP GQ
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLR 135
Query: 182 VGATPTTGPGTGGEG---ALLGCG-----SGRTP--PTSATWRR 215
+ A T G E + L G SG TP P+ A RR
Sbjct: 136 ISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARR 179
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 44.3 bits (103), Expect = 9e-05
Identities = 56/195 (28%), Positives = 75/195 (38%), Gaps = 37/195 (18%)
Query: 69 PPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSL------PAAASRSGSRTL-------RCA 115
PP PP + L P T G +L P SRS S TL +
Sbjct: 535 PPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSS 594
Query: 116 SSDRSLREQKQRRAGPDPTPSPAPPP----AGPRPSPGSLGPSAPAAPRTARGA----YE 167
S+ + E + +GP+ + +PPP A P+ S GP+ P A R A GA
Sbjct: 595 SATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPP 654
Query: 168 LQGGASQDG-----PGQAAVGATPTTG-------PGTGGEGALLGCGSGRTPPTSATWRR 215
G S DG + ATP G PGT G A G G+G S+ +
Sbjct: 655 ATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAG----ASSRSPK 710
Query: 216 RLLPAEVPPGAAAAN 230
+ E+P GA A+
Sbjct: 711 QARLGELPLGALQAS 725
Score = 40.8 bits (94), Expect = 0.001
Identities = 51/172 (29%), Positives = 66/172 (38%), Gaps = 16/172 (9%)
Query: 62 RAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRS-LPAAASRSGSRTLRCASSDRS 120
RA+ TRP L + E ++ A+G+ RS L A A R S S
Sbjct: 110 RASGTTRPGPLGQKGLRISAEETV--ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAM 167
Query: 121 LREQKQRRAG-----PDPTPS--PAPPPAGPRPSPGSLGPSAPAAPR-TARGAYELQGGA 172
R + R AG P P PS P PP GPR S S + P AR GG
Sbjct: 168 AR--RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGL 225
Query: 173 SQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPP 224
+ + ATP + P G A G+ R P + + + L A PP
Sbjct: 226 QRPASRSLSSSATPLSSPARSGPSAR---GTPRAPAHPSQPKPKGLQALRPP 274
Score = 35.8 bits (81), Expect = 0.033
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 18/156 (11%)
Query: 48 ARGQRGGSGGCQSTRAAERTRPPHP--PNAVLLLQPEPSL---TWAQGRGCRGHFRSLPA 102
AR + G + R RPP P P A+ +L ++ A+ G G ++P
Sbjct: 14 ARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGG-ATIPE 72
Query: 103 AASRSG-SRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSP-GSLGPSAPAAPR 160
+A R+G +RT R +S R R + P P SP RP P G G A
Sbjct: 73 SAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEET 132
Query: 161 TARGAYELQGGASQDGPGQAAVGA---TPTTGPGTG 193
AR G + + P ++A+ A T+GP G
Sbjct: 133 VAR-------GKATEAPKRSALSAGARRDTSGPTPG 161
Score = 32.0 bits (71), Expect = 0.48
Identities = 66/256 (25%), Positives = 88/256 (34%), Gaps = 47/256 (18%)
Query: 2 GLCTLQP--LGPPRK---------SSTSCGTWTASGLPSLGHLPRRLRLAFDFLEPRARG 50
GL L+P + PPRK SS+ T + S PS P L P ++
Sbjct: 267 GLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQA 326
Query: 51 QRG-GSGGCQSTRA--------AERTRPPHPPNAVLL--LQPEPSLTWAQGRGCRGHFRS 99
GS Q+T + T PP P A+ L LQ PS
Sbjct: 327 TTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSP-------------- 372
Query: 100 LPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTP---SPAPPPAGPRPSPGSLGPSAP 156
PA+ S T + + Q P P+P +P PPA P SP + PS
Sbjct: 373 -PASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPS-Q 430
Query: 157 AAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRR 216
A P A ++ P + P P L + PP AT +
Sbjct: 431 APPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQ 490
Query: 217 LLPAEVPPGAAAANFP 232
LP+ PP A+FP
Sbjct: 491 ALPS--PP----ASFP 500
Score = 30.0 bits (66), Expect = 1.8
Identities = 52/197 (26%), Positives = 72/197 (36%), Gaps = 26/197 (13%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAAS 105
P AR + GG Q R A R+ +A L P S G RG R+ PA S
Sbjct: 213 PAARRRPSAGGGLQ--RPASRSLSS---SATPLSSPARS-----GPSARGTPRA-PAHPS 261
Query: 106 RSGSRTLRCASSDRSLREQKQRR-------AGPDPTPSPAPPPAGPRPSPGSLGPSAPAA 158
+ + L+ + +K + P TPSP+ PP+ P PS PA
Sbjct: 262 QPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPAT 321
Query: 159 P----RTARGAYELQGGAS-QDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSATW 213
P T+ G+ LQ S P + + P P AL + +PP S
Sbjct: 322 PPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPA---LALPPLQAPPSPPASPPL 378
Query: 214 RRRLLPAEVPPGAAAAN 230
P+ P A A +
Sbjct: 379 SPLATPSPQAPNALAVH 395
>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
Length = 227
Score = 44.3 bits (103), Expect = 9e-05
Identities = 42/119 (35%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 108 GSRTLRCA-SSDRSLREQKQRRAGPDPTPSPAPPPAGPR----PSPGSLGPSAPAAPRTA 162
G R C + EQ+ DP PS PPP P P+PG P P A +
Sbjct: 3 GCRISACGPGAQEGTAEQRSPPPPRDPMPSSQPPPPTPTLTPTPTPGQ-SPPLPDAAGAS 61
Query: 163 RGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAE 221
GA E Q Q A G GPG GG GA G G A RRRLL E
Sbjct: 62 AGAAEDQ---ELQRWRQGASGIAGLAGPG-GGSGAAAGAGGRALELAEA--RRRLLEVE 114
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 44.3 bits (103), Expect = 9e-05
Identities = 54/205 (26%), Positives = 73/205 (35%), Gaps = 22/205 (10%)
Query: 2 GLCTLQPLGPPRKSSTSCGTWTASGLPSLGHLPRRLRLAFDFLEPRARGQRGGSGGCQST 61
G T P P +S SC + SG SLG R L + G+ G +
Sbjct: 767 GSRTCSPAPIPPHTSDSC---SKSGAASLGEEARDTPQPSSPLVLQVGRPEQGAVGPHRS 823
Query: 62 RAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLRCASSDRSL 121
++P P P P +W GR C R P RS S C S+ S
Sbjct: 824 HCC--SQPGTQPAQEAQRGPSPEASWLCGRYCPTPPRGRPCPQRRSSS----CGSTGSSH 877
Query: 122 REQKQRRAG--------PDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGAS 173
+ + G P PTPSP P R S S G A R L+ G
Sbjct: 878 QSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSASQG----AGSRGLSEEKTLRSGGG 933
Query: 174 QDGPGQAAVGATPTTGPGTGGEGAL 198
G +A+ G +P++ P + E +
Sbjct: 934 PQGQEEAS-GVSPSSLPRSSPEAVV 957
Score = 31.6 bits (70), Expect = 0.63
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 96 HFRSLPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSA 155
H + L A+S G + + D ++E++ RA P PA P P L +
Sbjct: 1406 HGQELSEASSPDG----KGSQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHLSETD 1461
Query: 156 PAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGG 194
P+A G+ +L+ G + PG +G T T G
Sbjct: 1462 PSASERQSGS-QLEPGLEKP-PGATMMGQEHTQAQPTQG 1498
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 44.3 bits (103), Expect = 9e-05
Identities = 35/107 (32%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 132 DPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQ--AAVGATPTTG 189
DP P P PPP P P P L P APA P GA PGQ AV ++P
Sbjct: 70 DPGPPPPPPPPPPPPPPPGLSPRAPAPP---------PAGALLPEPGQRCEAVSSSPPPP 120
Query: 190 PGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAANFPERER 236
P S P W R++ + V P A P+R R
Sbjct: 121 PCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGE-PKRSR 166
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 44.3 bits (103), Expect = 9e-05
Identities = 59/203 (29%), Positives = 73/203 (35%), Gaps = 33/203 (16%)
Query: 51 QRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCR-GHFRSLPAAASRSGS 109
+R SG Q A +R P PP P P A+ R R H +L A+ G
Sbjct: 276 ERPSSG--QQDVAPDRGPEPGPP------APLPPPGGARARRARLQHSSALTASVEEGG- 326
Query: 110 RTLRCASSDRSLREQKQRRAGPDPTPS-----PAPPPAGPRPSP------GSLGPSAPAA 158
D S R A P+ P+ P+PP P P P G P+ P A
Sbjct: 327 ----VPGEDPSSRPATPELAEPESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCA 382
Query: 159 PRTARGAYELQGGASQDGPGQAAV--GAT--PTTGPGTGGEGALLGCGSGRTPPTSATWR 214
P T + + P A+ G T P T P E G R+ P A
Sbjct: 383 PATDKAEEVVCAPEDVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPT 442
Query: 215 RRLLPAEV--PPGAAAANFPERE 235
+LP E PPG A PERE
Sbjct: 443 PPVLPDEEKGPPGPAPE--PERE 463
Score = 32.3 bits (72), Expect = 0.37
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 25/108 (23%)
Query: 128 RAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPT 187
R G +P+ +PAP P P+P S PA A+ +GP + A
Sbjct: 478 RIGTEPSTAPAPSP----PAPKSCLKHRPA--------------AASEGPAASPPLAAAE 519
Query: 188 TGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAANFPERE 235
+ P G G+L +A R + AE PP A PER+
Sbjct: 520 SPPVEPGPGSL-------DAEAAAPERPKAERAEAPPAGAERAAPERK 560
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 43.9 bits (102), Expect = 1e-04
Identities = 61/209 (29%), Positives = 71/209 (33%), Gaps = 58/209 (27%)
Query: 45 EPRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAA 104
EP GQ+G +G + + PH PN V P L GRG +G P A
Sbjct: 862 EPGEPGQKGDAGS-PGPQGLAGSPGPHGPNGV------PGLKG--GRGTQGP----PGAT 908
Query: 105 SRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGP----------- 153
GS R GP P P+ AP PAGP PG GP
Sbjct: 909 GFPGSAG----------------RVGP-PGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHG 951
Query: 154 ----SAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTG-------PGTGGEGALLGCG 202
PA P G G Q GP G TTG PG GE + G
Sbjct: 952 RVGDRGPAGPPGGPGDKGDPGEDGQPGP-DGPPGPAGTTGQRGIVGMPGQRGERGMPGLP 1010
Query: 203 S-----GRTPPTSATWRRRLLPAEVPPGA 226
G+ PT AT + PPG+
Sbjct: 1011 GPAGTPGKVGPTGATGDKGPPGPVGPPGS 1039
Score = 37.4 bits (85), Expect = 0.011
Identities = 29/85 (34%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 130 GPDPTPSPAPPPA-----GPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQA---- 180
GP P PP GPR PG++GP P R A G G GP A
Sbjct: 486 GPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGER 545
Query: 181 -AVGATPTTG----PGTGGEGALLG 200
VG++ G PG GE L G
Sbjct: 546 GPVGSSGPKGSQGDPGRPGEPGLPG 570
Score = 35.4 bits (80), Expect = 0.043
Identities = 55/208 (26%), Positives = 69/208 (33%), Gaps = 23/208 (11%)
Query: 12 PRKSSTSCGTWTASGLPSLGHLPRRLRLAFDFLEPRARGQRGGSG--GCQSTRAAERTR- 68
P+ S GT +G P L +P +A P +G RGG G G + T + R
Sbjct: 742 PKGSPGPSGTPGDTGPPGLQGMPGERGIAGT---PGPKGDRGGIGEKGAEGTAGNDGARG 798
Query: 69 ------PPHP---------PNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLR 113
PP P P L+ P S RG G ++ A + G
Sbjct: 799 LPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQ-GPDGQP 857
Query: 114 CASSDRSLREQKQRRAGPDPTP-SPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGA 172
+ QK P P + +P P GP PG G P A G G
Sbjct: 858 GVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRV 917
Query: 173 SQDGPGQAAVGATPTTGPGTGGEGALLG 200
GP A A P PG G L G
Sbjct: 918 GPPGPAGAPGPAGPLGEPGKEGPPGLRG 945
Score = 35.0 bits (79), Expect = 0.057
Identities = 48/175 (27%), Positives = 57/175 (32%), Gaps = 26/175 (14%)
Query: 49 RGQRG--GSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASR 106
RG RG G G ++ A T P + +P G R R LP
Sbjct: 1067 RGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGP--- 1123
Query: 107 SGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPP-------------PAGPRPSPGSLGP 153
G R + DR R QK R P PP P GPR PG +GP
Sbjct: 1124 QGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGP 1183
Query: 154 S------APAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPG--TGGEGALLG 200
S P P G G A +GP P PG T G ++G
Sbjct: 1184 SGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMG 1238
Score = 32.7 bits (73), Expect = 0.28
Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 129 AGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTT 188
AGP P A P GPR PG G P RGA+ + G GP +
Sbjct: 323 AGPTG-PMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPG 381
Query: 189 GPGTGGEGALLGCGSGRTP 207
PG GE G P
Sbjct: 382 NPGMKGEAGPTGARGPEGP 400
Score = 31.6 bits (70), Expect = 0.63
Identities = 53/217 (24%), Positives = 66/217 (30%), Gaps = 25/217 (11%)
Query: 8 PLGPPRKSSTSCGTWTASGLPSLGHLPRRLRLAFDFLEPRARGQRGGSG-----GCQSTR 62
P+ PP + C G + G R+ + L P G RG G G Q R
Sbjct: 85 PVTPPGECCPVCSQTPGGGNTNFGR-GRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPR 143
Query: 63 AAERTRPPHPPNAVLLLQPEPSLTWAQGR-GCRGH-FRSLPAAASRSGSRTLRCASSDRS 120
+ P + EP + G G GH P SR S +
Sbjct: 144 GERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSG 203
Query: 121 LREQKQRRAGPDPTPSPAPPP--------AGPRPSPGSLGPSAPAAPRTARGAYELQGGA 172
L Q G P P AGP PG G P P +RG G
Sbjct: 204 LGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKP 263
Query: 173 SQDG-------PGQAAVGATPTTG--PGTGGEGALLG 200
+DG PG+ +P PG G L G
Sbjct: 264 GEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKG 300
Score = 31.6 bits (70), Expect = 0.63
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 124 QKQRRAGPD-PTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAY---ELQGGASQDG-PG 178
Q+ R P P P+ P GP + G GP P P + G +G A DG PG
Sbjct: 1000 QRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPG 1059
Query: 179 Q-AAVGATPTTG-PGTGG 194
+ AVG G PG G
Sbjct: 1060 RDGAVGERGDRGDPGPAG 1077
Score = 31.2 bits (69), Expect = 0.82
Identities = 34/102 (33%), Positives = 36/102 (35%), Gaps = 19/102 (18%)
Query: 128 RAGPDPTPSPA--------PPPAGPRPSPGSLG-PSAP-----AAPRTARGAYELQGGAS 173
R GP P P P GP PGS G P P A P ARG QG
Sbjct: 346 RLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRG 405
Query: 174 QDGPGQAAVGATPTTG----PGTGGEGALLGCGSGRTPPTSA 211
+ GP VG+ G GT G G PP SA
Sbjct: 406 ETGP-PGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSA 446
Score = 31.2 bits (69), Expect = 0.82
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 130 GPDPTPSPAPPPAGPRPS--PGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPT 187
G D TP P P S PGS GP P+ + G ++G G A P
Sbjct: 423 GTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPK 482
Query: 188 TGPGTGG 194
PG G
Sbjct: 483 GEPGPHG 489
Score = 30.0 bits (66), Expect = 1.8
Identities = 21/71 (29%), Positives = 24/71 (33%)
Query: 141 PAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLG 200
P GP+ SPG G P +G +G A GP G GT G G
Sbjct: 739 PDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARG 798
Query: 201 CGSGRTPPTSA 211
PP A
Sbjct: 799 LPGPLGPPGPA 809
Score = 30.0 bits (66), Expect = 1.8
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 130 GPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYE---LQGGASQDG----PGQAAV 182
GP TP PP G + PG G + P+ RG +G A DG PG
Sbjct: 747 GPSGTPGDTGPP-GLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGP 805
Query: 183 G--ATPTTGPGTGGEGALLGCGSGRTPPTS 210
A PT G G L+G R P S
Sbjct: 806 PGPAGPTGEKGEPGPRGLVGPPGSRGNPGS 835
Score = 29.6 bits (65), Expect = 2.4
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 25/89 (28%)
Query: 137 PAPPPAGPRPS----PGSLGPSAPAAPRTAR---------------GAYELQGGASQDGP 177
P PP G +P PG G P PR R G + GG DGP
Sbjct: 683 PGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGP 742
Query: 178 -GQAAVGATP-TTGP----GTGGEGALLG 200
G TP TGP G GE + G
Sbjct: 743 KGSPGPSGTPGDTGPPGLQGMPGERGIAG 771
Score = 28.9 bits (63), Expect = 4.1
Identities = 28/91 (30%), Positives = 31/91 (34%), Gaps = 24/91 (26%)
Query: 124 QKQRRAGPDPTPSPAPPPA----------GPRPSPGSLGPSAPAAPRTARGAYELQGGAS 173
Q+ P P SP P A GP SPG+ GP A P + G QG
Sbjct: 403 QRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGP---QGSTG 459
Query: 174 QDG----PGQAAVGATPTTGPGTGGEGALLG 200
G PG V PG GE G
Sbjct: 460 PQGIRGQPGDPGV-------PGFKGEAGPKG 483
Score = 28.5 bits (62), Expect = 5.3
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 123 EQKQRRAGPDPTPSPAPPPAGPRPSPGSLG-PSAPAAPRTARGAYELQGGASQDGPGQAA 181
E+ +R DP P P G R +PG+ G P + P +GA +G GP +
Sbjct: 499 EEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLP-GPKGAQGERGPVGSSGPKGSQ 557
Query: 182 VGATPTTGPGTGGEGALLG 200
PG G L G
Sbjct: 558 GDPGRPGEPGLPGARGLTG 576
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 43.9 bits (102), Expect = 1e-04
Identities = 46/140 (32%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 45 EPRARGQR--GGSGGCQSTRAA--ERTRPPHPPNAVLLLQP------------EPS-LTW 87
+PRARG+ G G T+ A E + PP L P +PS LT
Sbjct: 224 DPRARGEEASGPRGVVDLTQEARAEGRQDRGPPRLAERLSPFLAESKTKNAALQPSVLTM 283
Query: 88 AQGRGCRGHFRSLPAAASRSGSR-TLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRP 146
G +L A A R G++ R R LR + GP P PSP PPP P
Sbjct: 284 CNGGAGDVGLPALVAEAGRGGAKEAARQDEGARLLRRTETLLPGPRPCPSPLPPPPAPPK 343
Query: 147 SPGSLGPSAPAAPRTARGAY 166
P P+ PAA T G Y
Sbjct: 344 GP----PAPPAA--TPAGVY 357
Score = 34.7 bits (78), Expect = 0.074
Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 21/194 (10%)
Query: 50 GQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAA---ASR 106
G+ GG+ G + A R R P + + + T +G S P A +S
Sbjct: 2314 GKDGGTAGSEEPGAKARGRGRKPSAKA---KGDRAATLEEGNPT-DEVPSTPLALEPSST 2369
Query: 107 SGSRTLRCASSDRSLREQKQRRAGPDPTPS-------PAPPPAGPRPSPGSLGPSAPAAP 159
GS+ D+ + K R A P P+P+ PAP P P+P + AP
Sbjct: 2370 PGSKKSPPEPVDKRAKAPKARPAPPQPSPAPPAFTSCPAPEPFAELPAPATSLAPAPLIT 2429
Query: 160 RTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLP 219
A + A+++ GA PG E + G T P S + LL
Sbjct: 2430 MPATRPKPKKARAAEES------GAKGPRRPGEEAELLVKLDHEGVTSPKSKKAKEALLL 2483
Query: 220 AEVPPGAAAANFPE 233
E PGA P+
Sbjct: 2484 RE-DPGAGGWQEPK 2496
Score = 28.9 bits (63), Expect = 4.1
Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 5/138 (3%)
Query: 62 RAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAA-----SRSGSRTLRCAS 116
R A + R P P + W + R R AAA + ++T RCA
Sbjct: 1969 RKARKLRGPKEPGFEAGPEASDDDLWTRRRSERIFLHDASAAAPAPVSTAPATKTSRCAK 2028
Query: 117 SDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDG 176
+ RA P P G P APA P AR + A++
Sbjct: 2029 GGPLSPRKDAGRAKDRKDPRKKKKGKEAGPGAGLPPPRAPALPSEARAPHASSLTAAKRS 2088
Query: 177 PGQAAVGATPTTGPGTGG 194
+A G GG
Sbjct: 2089 KAKAKGKEVKKENRGKGG 2106
Score = 27.7 bits (60), Expect = 9.0
Identities = 33/130 (25%), Positives = 42/130 (32%), Gaps = 21/130 (16%)
Query: 99 SLPAAASRSGSRTLRCASSDRSLREQKQRRAG----PDPTPSPAPPPAG----------- 143
S+ A R G + + D RE++ R G P +P P P G
Sbjct: 377 SVEAFDERPGPIQIASQARDARAREREAGRPGVLQAPPGSPRPLDRPEGLREKNSVIRSL 436
Query: 144 ----PRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALL 199
P +P A PR A EL + P + A GP L
Sbjct: 437 KRPPPADAPTVRATRASPDPRAYVPAKELLKPEADPRPCERAPRGP--AGPAAQQAAKLF 494
Query: 200 GCGSGRTPPT 209
G GR PPT
Sbjct: 495 GLEPGRPPPT 504
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 43.5 bits (101), Expect = 2e-04
Identities = 45/137 (32%), Positives = 54/137 (39%), Gaps = 16/137 (11%)
Query: 103 AASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPS--PGSLGPSAPAAPR 160
A+ R R S SL + GP P P PA PRP PG+ P PAA R
Sbjct: 5 ASGRRQGRARGRPHSQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPPAA-R 63
Query: 161 TARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPA 220
T G+ + P AA G G + A G + R P W RRL
Sbjct: 64 THPGSCRAR------CPSPAAGGLRGPWTAAPGRQRADEGAAAAR-PERQRVWARRL--- 113
Query: 221 EVPPGAAAANFPERERL 237
PG+AAA P R+ L
Sbjct: 114 ---PGSAAAPAPGRDAL 127
Score = 28.5 bits (62), Expect = 5.3
Identities = 37/120 (30%), Positives = 42/120 (35%), Gaps = 29/120 (24%)
Query: 47 RARGQRGGSGGCQS--TRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLP--A 102
RAR +GG + T A R R A +PE WA R LP A
Sbjct: 70 RARCPSPAAGGLRGPWTAAPGRQRADEGAAAA---RPERQRVWA---------RRLPGSA 117
Query: 103 AASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPA-APRT 161
AA G LR P P P PPAG P P +PA APR+
Sbjct: 118 AAPAPGRDALRLPPPP------------PPPPERPRLPPAGLAGGPADSAPPSPAPAPRS 165
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/101 (31%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 130 GPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTG 189
G D P P PP G PGS G P + G+ G + GP A P
Sbjct: 327 GSDGQPGPPGPP-GTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGP 385
Query: 190 PGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAAAN 230
PG G G G P L+ A PPG A AN
Sbjct: 386 PGINGSPG----GKGEMGPAGIPGAPGLMGARGPPGPAGAN 422
Score = 40.0 bits (92), Expect = 0.002
Identities = 28/78 (35%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 129 AGPDPTPSPAPPPA--GPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATP 186
AGP P+ PP G PG +GP P R RG+ G Q GP G
Sbjct: 1136 AGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGP----PGPPG 1191
Query: 187 TTGPGTGGEGALLGCGSG 204
GP GG GA G G
Sbjct: 1192 APGPCCGGVGAAAIAGIG 1209
Score = 39.3 bits (90), Expect = 0.003
Identities = 56/203 (27%), Positives = 64/203 (31%), Gaps = 36/203 (17%)
Query: 48 ARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRS 107
A G RGG+G PP PP A P L G RG S P
Sbjct: 691 APGLRGGAGPPGPEGGKGAAGPPGPPGAA----GTPGLQGMPGE--RGGLGS-PGPKGDK 743
Query: 108 GSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPP--------------AGPRPSPGSLGP 153
G A ++ + GP P PA P AGPR SPG G
Sbjct: 744 GEPGGPGADGVPG-KDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGE 802
Query: 154 SAPAAPRTARGA----YELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPT 209
+ P P GA E G + PG+ G P GG G +G P
Sbjct: 803 TGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP-----AGPPGPQ 857
Query: 210 SATWRRRLLPAEVPPGAAAANFP 232
R P G AA FP
Sbjct: 858 GVKGER-----GSPGGPGAAGFP 875
Score = 37.4 bits (85), Expect = 0.011
Identities = 55/201 (27%), Positives = 67/201 (33%), Gaps = 23/201 (11%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAAS 105
P + G G G A + PP PP A+ P GR R R LP
Sbjct: 191 PGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGK-DGESGRPGRPGERGLPGPPG 249
Query: 106 RSGSRTLRCASSDRSLREQKQRRAGPDPTPSP-------------APPPAGPRPSPGSLG 152
G + + R R T +P AP P GPR +PG G
Sbjct: 250 IKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERG 309
Query: 153 -PSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSA 211
P P A ARG +G Q GP P T G GA G +P ++
Sbjct: 310 RPGLPGA-AGARGNDGARGSDGQPGP-----PGPPGTAGFPGSPGAKGEVGPAGSPGSNG 363
Query: 212 TWRRRLLPAEVPPGAAAANFP 232
+R P P G A A P
Sbjct: 364 APGQRGEPG--PQGHAGAQGP 382
Score = 37.0 bits (84), Expect = 0.015
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 141 PAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGP-GTGGEGALL 199
PAG +PG +G P P A GA L+GGA + G GA GP G GE +
Sbjct: 400 PAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKN----GAKGEPGPRGERGEAGIP 455
Query: 200 G 200
G
Sbjct: 456 G 456
Score = 36.2 bits (82), Expect = 0.025
Identities = 30/90 (33%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 137 PAPP-PAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGE 195
P PP P+GPR PG +G P A G +GG GP Q G TGP
Sbjct: 563 PGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGP-QGPPGKNGETGPQGPPG 621
Query: 196 GALLGCGSGRTPPTSATWRRRLLPAEVPPG 225
G G T P + L PPG
Sbjct: 622 PTGPGGDKGDTGPPGPQGLQGLPGTGGPPG 651
Score = 35.8 bits (81), Expect = 0.033
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 130 GPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYEL---QGGASQDGPGQAAVGATP 186
GP P + P P GP SPG GP PA A G+ + +G A Q G + P
Sbjct: 882 GP-PGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP 940
Query: 187 TTGPGTGGEGALLGCGSGRTPP 208
PG G + G PP
Sbjct: 941 PGAPGPLGIAGITGARGLAGPP 962
Score = 35.8 bits (81), Expect = 0.033
Identities = 35/133 (26%), Positives = 42/133 (31%), Gaps = 14/133 (10%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAAS 105
P +G +G SG + + PP P Q P L G R
Sbjct: 971 PGPQGVKGESGKPGANGLSGERGPPGP-------QGLPGLAGTAGEPGRDGNPGSDGLPG 1023
Query: 106 RSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPP-PAGPRPSPGSLGPSAPAAPRTARG 164
R GS + R + P P PP P GP G G S PA P A G
Sbjct: 1024 RDGS------PGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPG 1077
Query: 165 AYELQGGASQDGP 177
+G GP
Sbjct: 1078 PAGSRGAPGPQGP 1090
Score = 35.4 bits (80), Expect = 0.043
Identities = 48/168 (28%), Positives = 55/168 (32%), Gaps = 23/168 (13%)
Query: 45 EPRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQG-RGCRGHFRSLPAA 103
EP A G G +G R A R P PN + P G RG G AA
Sbjct: 472 EPGANGLPGAAG----ERGAPGFRGPAGPNGI------PGEKGPAGERGAPGPAGPRGAA 521
Query: 104 AS--RSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRT 161
R G +R GP P PP G + G GP P+ PR
Sbjct: 522 GEPGRDG------VPGGPGMRGMPGSPGGPGSDGKPGPP--GSQGESGRPGPPGPSGPRG 573
Query: 162 ARGAYELQGGASQDG-PGQAAVGATPTTGPGTGGEGALLGCGSGRTPP 208
G G DG PG+ P GPG G G + PP
Sbjct: 574 QPGVMGFPGPKGNDGAPGKNGERGGP-GGPGPQGPPGKNGETGPQGPP 620
Score = 34.7 bits (78), Expect = 0.074
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 135 PSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGG 194
P+ AP PAG R +PG GP RGA ++G + PG GA + GP G
Sbjct: 1072 PAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKG--HRGFPGNP--GAPGSPGP-AGQ 1126
Query: 195 EGAL 198
+GA+
Sbjct: 1127 QGAI 1130
Score = 33.5 bits (75), Expect = 0.16
Identities = 35/133 (26%), Positives = 47/133 (35%), Gaps = 2/133 (1%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAAS 105
P +G RG +G + A PP P A G G S A
Sbjct: 1028 PGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP 1087
Query: 106 RSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPP-PAGPRPSPGSLGPSAPAAPRTARG 164
+ G R + + +R K R P +P P PAG + + GS GP+ P P G
Sbjct: 1088 Q-GPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSG 1146
Query: 165 AYELQGGASQDGP 177
G + GP
Sbjct: 1147 PPGKDGTSGHPGP 1159
Score = 32.7 bits (73), Expect = 0.28
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 139 PPPAGPRPSPGSLGPSAPAA------PRTARGAYELQGGASQDGPGQAAVGATPTTGPGT 192
P P G +PG+ G A P GA L+GGA GP A P PG
Sbjct: 659 PGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGA 718
Query: 193 GGEGALLG 200
G L G
Sbjct: 719 AGTPGLQG 726
Score = 32.0 bits (71), Expect = 0.48
Identities = 37/164 (22%), Positives = 56/164 (34%), Gaps = 19/164 (11%)
Query: 46 PRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAAS 105
P +G+ G +G + PP P A P L G + + P
Sbjct: 392 PGGKGEMGPAGIPGAPGLMGARGPPGPAGA----NGAPGLRGGAGEPGKNGAKGEPGPRG 447
Query: 106 RSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPS---------AP 156
G + + E + + +P + P AG R +PG GP+ P
Sbjct: 448 ERGEAGIPGVPGAKG--EDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGP 505
Query: 157 AAPRTARGAYELQGGASQDG----PGQAAVGATPTTGPGTGGEG 196
A R A G +G A + G PG + P + G G +G
Sbjct: 506 AGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDG 549
Score = 32.0 bits (71), Expect = 0.48
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 125 KQRRAGPDPTPSPAPPP-AGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDG-PGQAAV 182
K R P PP AGP PG GP+ P P+ +G GG G PG +
Sbjct: 824 KGERGAPGEKGEGGPPGVAGP---PGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGL 880
Query: 183 GATPTTGPGTGGEG 196
P + G G
Sbjct: 881 PGPPGSNGNPGPPG 894
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 135 PSPAPPPAGPRPSPGSLG-PSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGP-GT 192
P PA PP P P PG+ G P +P +P +G G A GP GA +GP G
Sbjct: 173 PGPAGPPGPPGP-PGTSGHPGSPGSP-GYQGPPGEPGQAGPSGP-PGPPGAIGPSGPAGK 229
Query: 193 GGEGALLG 200
GE G
Sbjct: 230 DGESGRPG 237
Score = 28.1 bits (61), Expect = 6.9
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 135 PSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDG-PGQAAVGATPTTGPGTG 193
P P P GP G GP P + G G + G PG P G G
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKG 675
Query: 194 GEGA 197
GA
Sbjct: 676 DAGA 679
Score = 27.7 bits (60), Expect = 9.0
Identities = 36/140 (25%), Positives = 45/140 (32%), Gaps = 40/140 (28%)
Query: 131 PDPTPSPAPPPAGPRP--------------------------SPGSLGP-----SAPAAP 159
P P +P PP G P SPGS GP S P P
Sbjct: 89 PQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148
Query: 160 RT---ARGAYELQGGASQDG----PGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSAT 212
+ +Y+++ G + G PG A P PGT G G + PP
Sbjct: 149 QNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGP-PGTSGHPGSPGSPGYQGPPGEPG 207
Query: 213 WRRRLLPAEVPPGAAAANFP 232
P PPGA + P
Sbjct: 208 QAGPSGPPG-PPGAIGPSGP 226
Score = 27.7 bits (60), Expect = 9.0
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 20/87 (22%)
Query: 133 PTPSPAPPPAGP---------------RPSPGSLGPSAPAAPRTARGAYELQGGASQDG- 176
P P+ P P GP + PG G + P+ P GA G A +DG
Sbjct: 173 PGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGE 232
Query: 177 ---PGQAAVGATPTTGPGTGGEGALLG 200
PG+ P PG G + G
Sbjct: 233 SGRPGRPGERGLPGP-PGIKGPAGIPG 258
Score = 27.7 bits (60), Expect = 9.0
Identities = 28/100 (28%), Positives = 34/100 (34%), Gaps = 20/100 (20%)
Query: 129 AGPDPTPSPAPPPA-----GPRPSPGSLGPSA---------PAAPRTARGAYELQGGASQ 174
AGP PA PP G R SPG G + P G G +
Sbjct: 842 AGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGK 901
Query: 175 DGP-----GQAAVGATPTTGP-GTGGEGALLGCGSGRTPP 208
DGP A G+ +GP G G+ G + PP
Sbjct: 902 DGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPP 941
Score = 27.7 bits (60), Expect = 9.0
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 15/82 (18%)
Query: 130 GPDPTPSP------------APPPA--GPRPSPGSLGPSAPAAPRTARGAYELQGGASQD 175
GP P P A PP GPR SPG G + A G +G
Sbjct: 939 GPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQ 998
Query: 176 G-PGQAAVGATPTTGPGTGGEG 196
G PG A P G +G
Sbjct: 999 GLPGLAGTAGEPGRDGNPGSDG 1020
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 43.1 bits (100), Expect = 2e-04
Identities = 36/100 (36%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 129 AGPDPTPSPAPPPA--GPRPSPGSLGPSAPAAPRTARGA--YELQGGASQDGPGQAAVGA 184
A P P P P P PA PRP+PG AP PR + GA G A G
Sbjct: 906 AKPPPPPQPLPSPAYPAPRPAPG----PAPFVPRERASVDRWRRTKGAGPPGGAGLADGF 961
Query: 185 TPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPP 224
GP +G LG G R P A R PA PP
Sbjct: 962 HRYYGP-IEPQGLGLGLGEARAAPRGAAGRPLSPPAAQPP 1000
Score = 37.0 bits (84), Expect = 0.015
Identities = 33/98 (33%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 137 PAPPPAGPRPSPGSLGPSAPAAPRTARG------AYELQGGASQDGPGQAAVGATPTTGP 190
PA PPAG P S P+ PAA TA G A+E + + ++ + P GP
Sbjct: 1016 PAEPPAGAFPGFPS-PPAPPAAAATAVGPPLCRLAFEDESPPAPARWPRSDPESQPLLGP 1074
Query: 191 GTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAA 228
G GG G G G G PA PP AA
Sbjct: 1075 GAGGAGGTGGAGGG-------------APAAPPPCRAA 1099
>gi|5803080 macrophage receptor with collagenous structure [Homo
sapiens]
Length = 520
Score = 43.1 bits (100), Expect = 2e-04
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 130 GPDPTPSPAPPPA-----GPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGA 184
G P P PPA G G+ GPS P P +G LQG Q PG+ GA
Sbjct: 163 GMPGAPGPPGPPAEKGAKGAMGRDGATGPSGPQGPPGVKGEAGLQG--PQGAPGKQ--GA 218
Query: 185 TPTTGP----GTGGEGALLG 200
T T GP G+ G+G L+G
Sbjct: 219 TGTPGPQGEKGSKGDGGLIG 238
Score = 38.1 bits (87), Expect = 0.007
Identities = 40/160 (25%), Positives = 57/160 (35%), Gaps = 17/160 (10%)
Query: 42 DFLEPRARGQRGGSGGCQSTRAAERTRPPHPPNAVLL--LQPEPSLTWAQGRGCRGHFRS 99
DF P G G G P PP AV + EP + GR
Sbjct: 281 DFGRPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRA------G 334
Query: 100 LPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPA--------PPPAGPRPSPGSL 151
LP + G+ L+ + D L+ Q Q R G P PA P AGP+ +PG
Sbjct: 335 LPGSPGSPGATGLKGSKGDTGLQGQ-QGRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQA 393
Query: 152 GPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPG 191
G + + G ++G + G +V ++ G
Sbjct: 394 GQKGDQGVKGSSGEQGVKGEKGERGENSVSVRIVGSSNRG 433
Score = 28.1 bits (61), Expect = 6.9
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 130 GPDPTPSPAPP--PAGPRPSPGSLGPSAPAAPRTARGAYELQG--GASQDGPGQAAVGAT 185
G D P+ P P G + G GP + A G QG G+ DG G T
Sbjct: 184 GRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPKGET 243
Query: 186 PTTG-------PGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAA 227
T G PG+ G+ + G +G P A + PPG A
Sbjct: 244 GTKGEKGDLGLPGSKGDRGMKG-DAGVMGPPGAQGSKGDFGRPGPPGLA 291
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 43.1 bits (100), Expect = 2e-04
Identities = 47/211 (22%), Positives = 76/211 (36%), Gaps = 34/211 (16%)
Query: 11 PPRKSSTSCGTWTASGLPSLGHLPRRLRLAFDFLEPRARGQRGGSGGCQSTRAAERTRPP 70
PPR +S + SG G L ++ ++ G+ GG + P
Sbjct: 1088 PPRAASAAMYVPARSGRGRKGPLVKQTKV---------EGEPQKGGGLPPAPSPTSPASP 1138
Query: 71 HPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRAG 130
PP AV + S+ + A ++ S R+ + +S++ Q + G
Sbjct: 1139 QPPPAVAAPSEKNSIPIPT--------IIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGG 1190
Query: 131 -------PDPTPSPAPPPAGPRPSPGSLGPSAPAA-------PRTARGAYELQGGASQDG 176
P P P+ +P P P P P PS PA GA +GG +
Sbjct: 1191 GGGGGSSPSPAPAMSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEA 1250
Query: 177 PGQAAVGATPTTGPGTGGEGALLGCGSGRTP 207
++ + + G GG+G G G+G P
Sbjct: 1251 RRRSTLFLSTDAGDEDGGDG---GLGTGAAP 1278
Score = 40.0 bits (92), Expect = 0.002
Identities = 45/179 (25%), Positives = 59/179 (32%), Gaps = 31/179 (17%)
Query: 33 LPRRLRLAFDFLEPRARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRG 92
LP L + F +P + G T A PP PP AV P
Sbjct: 1567 LPPPLEFSNSFEKPESPLTPGPPHPLPDTPAPATPLPPVPPPAVAAAPP----------- 1615
Query: 93 CRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLG 152
+L + AS S D + Q + P P PPA P+P +
Sbjct: 1616 ------TLDSTASS-------LTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQ 1662
Query: 153 PSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTT-------GPGTGGEGALLGCGSG 204
P P T G E+ +S D P + A+ + G GG GA G SG
Sbjct: 1663 PGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASG 1721
Score = 37.0 bits (84), Expect = 0.015
Identities = 52/177 (29%), Positives = 66/177 (37%), Gaps = 47/177 (26%)
Query: 71 HPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRAG 130
H V+ Q P A+ RG G ++P A R A+SD S+ A
Sbjct: 402 HREQDVVPFQESPKYA-ARRRGPPGTGLTVPPALLR--------ANSDTSM-------AL 445
Query: 131 PDPTPSPAPPPAG---PRPSPGSLGPSAPAAPRTARGAYELQGGASQDGP---------- 177
PD AP A P P+ GS G S P+AP T + L+ +S G
Sbjct: 446 PDWMVFSAPGAASSGAPGPTSGSQGQSQPSAPTTKLSSGTLRSASSPRGARARSPSRGRH 505
Query: 178 ---------GQAAVGATPTTGP--GTGGEGALLGCGSGRTPPTSATWRRRLLPAEVP 223
G+ + TP GP GTGG G G R RRR L + VP
Sbjct: 506 PEDAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGSLGSR-------GRRRKLYSAVP 555
Score = 35.4 bits (80), Expect = 0.043
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 137 PAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEG 196
P PPP P P P + ++ A A EL Q G AA GA P G+GG G
Sbjct: 1844 PGPPPP-PLPGPLAQPQASALATVKASIISELSSKLQQFGGSSAAGGALPWARGGSGGGG 1902
Query: 197 ALLGCGSGRTPP-TSATWRRRL 217
G+ P TS+ R+RL
Sbjct: 1903 DSHHGGASYVPERTSSLQRQRL 1924
Score = 33.9 bits (76), Expect = 0.13
Identities = 34/124 (27%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 112 LRCASSDRSLREQKQRRAGPDPTPSP------APPPAGPRPSPGS-------LGPSAPAA 158
L A+ +R+L+E + P P P P APPP SP + L ++P
Sbjct: 1355 LALAARERALKESSEGGGAPQPPPRPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGASPPD 1414
Query: 159 P-------RTARGAYELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGC-GSGRTPPTS 210
P R G+ E AS ++ + P T PG G LG P S
Sbjct: 1415 PARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAPGVGPLLLQLGTEPPAPHPGVS 1474
Query: 211 ATWR 214
WR
Sbjct: 1475 KPWR 1478
Score = 30.4 bits (67), Expect = 1.4
Identities = 28/96 (29%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 119 RSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPG 178
RSL P PT SP PP P P S G P +PR GG G G
Sbjct: 910 RSLSVPGSEDIPPPPTTSPPEPPYSTPPVPSSSGRLTP-SPR---------GGPFNPGSG 959
Query: 179 QAAVGATPTTGPGTGGEGALLGC------GSGRTPP 208
++P + G +G SG PP
Sbjct: 960 GPLPASSPASFDGPSPPDTRVGSREKSLYHSGPLPP 995
Score = 30.0 bits (66), Expect = 1.8
Identities = 33/115 (28%), Positives = 39/115 (33%), Gaps = 25/115 (21%)
Query: 143 GPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGP-GQAAVGATPT------TGPGTGGE 195
G +PG P P RG G + GP G TPT TG GT G
Sbjct: 1738 GGSSTPGPPYPPQLMTPSKLRGRALGASGGLRPGPSGGLRDPVTPTSPTVSVTGAGTDGL 1797
Query: 196 GALLGCGSGRTP------------------PTSATWRRRLLPAEVPPGAAAANFP 232
AL C T PT+++ R+LLP E PG P
Sbjct: 1798 LALRACSGPPTAGVAGGPVAVEPEVPPVPLPTASSLPRKLLPWEEGPGPPPPPLP 1852
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 42.7 bits (99), Expect = 3e-04
Identities = 51/177 (28%), Positives = 62/177 (35%), Gaps = 10/177 (5%)
Query: 47 RARGQRGGSGGCQSTRAAERTRPPHPPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASR 106
R+RG R Q A+ R P+ + S + QGR R + A+
Sbjct: 69 RSRGFREIKERAQGPGASPWGRWDWSPSPRFAARLSTSSPFPQGRAQRPQRGGVDLPATP 128
Query: 107 SGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAY 166
G R S LR +RRA P P P P P PR P PA P + A
Sbjct: 129 GGPRGQCAGRSGDVLRRAGRRRARPPPVPR-LPAPRAPR------RPRGPATPDPSPPAG 181
Query: 167 ELQGGASQDGPGQAAVGATPTTGPGTGGEGALL---GCGSGRTPPTSATWRRRLLPA 220
G A + PG+ PG G LL G G R A RR L A
Sbjct: 182 RPHGPAGRAAPGRRPGCTAQLRAPGRRGRQRLLVHPGGGGRRQWQRLARARRAALLA 238
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 42.7 bits (99), Expect = 3e-04
Identities = 31/68 (45%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 130 GPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGATPTTG 189
GP P P P PPP GP P PG L PS P A GA GG P A G
Sbjct: 169 GPPPPPGPPPPP-GPPPPPG-LPPS--GVPAAAHGA----GGGPPPAPPLPA-----AQG 215
Query: 190 PGTGGEGA 197
PG GG GA
Sbjct: 216 PGGGGAGA 223
Score = 29.6 bits (65), Expect = 2.4
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 28/94 (29%)
Query: 130 GPDPTPSPAPPPA---------------GPRPSP--------GSLGPSAPAAPRTARGAY 166
GP P P P PPP GP P+P G G AP GA
Sbjct: 175 GPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLAAAIAGA- 233
Query: 167 ELQGGASQDGPGQAAVGAT-PTTGPGTGGEGALL 199
+L+ + Q+ +A+ G T P G G G L+
Sbjct: 234 KLRKVSKQE---EASGGPTAPKAESGRSGGGGLM 264
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 42.7 bits (99), Expect = 3e-04
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 19/113 (16%)
Query: 101 PAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGP-----RPSPGSLGPSA 155
P A+ +G T R ++ K A P P P P P P R +PG+L
Sbjct: 112 PEPAAVAGVETSRALAAGAD--SPKTEEARPSPAPGPGTPTGTPTRTPSRTAPGALTAKP 169
Query: 156 PAAPR---------TARGAY-ELQGGASQDGPGQAAVGATP--TTGPGTGGEG 196
P AP+ TAR A ++ GG A+ G P +GPGTG G
Sbjct: 170 PLAPKPGTTVASGVTARSASGQVTGGHGAAAATSASAGQAPEDPSGPGTGPSG 222
Score = 33.5 bits (75), Expect = 0.16
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 43/124 (34%)
Query: 129 AGPDPTPSPAPPPA----------------GPRP----SPGSLGPSAPAAPRTARGAYEL 168
+ P P P+PAP PA P+P P S P+A A T+R
Sbjct: 70 SAPAPAPAPAPAPAVTGSTVVVLTLEASPEAPKPQLPSGPESPEPAAVAGVETSRAL--- 126
Query: 169 QGGASQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTPPTSATWRRRLLPAEVPPGAAA 228
A D P +P GPGT PT R P+ PGA
Sbjct: 127 --AAGADSPKTEEARPSPAPGPGT---------------PTGTPTR---TPSRTAPGALT 166
Query: 229 ANFP 232
A P
Sbjct: 167 AKPP 170
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 42.7 bits (99), Expect = 3e-04
Identities = 32/88 (36%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 125 KQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPA-APRTARGAYELQGGASQDGPGQAAVG 183
K A P P PPP + P PSA A A T EL A GP G
Sbjct: 32 KYSEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTG 91
Query: 184 AT-PTTGPGTGGEGALLGCGSGRTPPTS 210
P GPG G G LG GS P S
Sbjct: 92 EREPAAGPGRSGPGPGLGSGSTSGPADS 119
>gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 42.7 bits (99), Expect = 3e-04
Identities = 50/187 (26%), Positives = 63/187 (33%), Gaps = 29/187 (15%)
Query: 49 RGQRGGSGGCQS-----------TRAAERTRPPHPPNAVLLLQ---PEPSLTWAQG---- 90
RG +G G + TR+ R PP A + PE T A+G
Sbjct: 72 RGSKGAKDGALTLLLDEFENMSVTRSNSLRRDSPPPPARARQENGMPEEPATTARGGPGK 131
Query: 91 RGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGP---RPS 147
G RG F A SG R R A ++ + ++ GP + P +GP P
Sbjct: 132 AGSRGRFAGHSEAGGGSGDR--RRAGPEKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQ 189
Query: 148 PGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGA---TPTTGPGTGGEGALLGCGSG 204
P L A A Y A D P + A G GP GG S
Sbjct: 190 PAGLASGAKLAAGRPFNTYPR---ADTDHPSRGAQGEPHDVAPNGPSAGGLAIPQSSSSS 246
Query: 205 RTPPTSA 211
PPT A
Sbjct: 247 SRPPTRA 253
Score = 30.4 bits (67), Expect = 1.4
Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 21/137 (15%)
Query: 45 EPRARGQRGGSGGCQSTRAAERT---------RPPHPPNAVLLLQPEPSLTWAQG----- 90
E R + R GSGG Q + +R +P + L P T+ +
Sbjct: 157 EKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPFNTYPRADTDHP 216
Query: 91 -RGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRA------GPDPTPSPAPPPAG 143
RG +G + +G + +SS S + R A GP + PPA
Sbjct: 217 SRGAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPSPGVLGPHASEPQLAPPAC 276
Query: 144 PRPSPGSLGPSAPAAPR 160
+P GP P +P+
Sbjct: 277 TPAAPAVPGPPGPRSPQ 293
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 42.7 bits (99), Expect = 3e-04
Identities = 32/88 (36%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 125 KQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPA-APRTARGAYELQGGASQDGPGQAAVG 183
K A P P PPP + P PSA A A T EL A GP G
Sbjct: 32 KYSEATEHPGAPPQPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTG 91
Query: 184 AT-PTTGPGTGGEGALLGCGSGRTPPTS 210
P GPG G G LG GS P S
Sbjct: 92 EREPAAGPGRSGPGPGLGSGSTSGPADS 119
>gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 42.7 bits (99), Expect = 3e-04
Identities = 50/187 (26%), Positives = 63/187 (33%), Gaps = 29/187 (15%)
Query: 49 RGQRGGSGGCQS-----------TRAAERTRPPHPPNAVLLLQ---PEPSLTWAQG---- 90
RG +G G + TR+ R PP A + PE T A+G
Sbjct: 72 RGSKGAKDGALTLLLDEFENMSVTRSNSLRRDSPPPPARARQENGMPEEPATTARGGPGK 131
Query: 91 RGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGP---RPS 147
G RG F A SG R R A ++ + ++ GP + P +GP P
Sbjct: 132 AGSRGRFAGHSEAGGGSGDR--RRAGPEKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQ 189
Query: 148 PGSLGPSAPAAPRTARGAYELQGGASQDGPGQAAVGA---TPTTGPGTGGEGALLGCGSG 204
P L A A Y A D P + A G GP GG S
Sbjct: 190 PAGLASGAKLAAGRPFNTYPR---ADTDHPSRGAQGEPHDVAPNGPSAGGLAIPQSSSSS 246
Query: 205 RTPPTSA 211
PPT A
Sbjct: 247 SRPPTRA 253
Score = 30.4 bits (67), Expect = 1.4
Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 21/137 (15%)
Query: 45 EPRARGQRGGSGGCQSTRAAERT---------RPPHPPNAVLLLQPEPSLTWAQG----- 90
E R + R GSGG Q + +R +P + L P T+ +
Sbjct: 157 EKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPFNTYPRADTDHP 216
Query: 91 -RGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRA------GPDPTPSPAPPPAG 143
RG +G + +G + +SS S + R A GP + PPA
Sbjct: 217 SRGAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPSPGVLGPHASEPQLAPPAC 276
Query: 144 PRPSPGSLGPSAPAAPR 160
+P GP P +P+
Sbjct: 277 TPAAPAVPGPPGPRSPQ 293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,057,351
Number of Sequences: 37866
Number of extensions: 1067206
Number of successful extensions: 21752
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 1626
Number of HSP's that attempted gapping in prelim test: 9318
Number of HSP's gapped (non-prelim): 9050
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.