Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LRRC25 Sequence: fasta or formatted (305aa) NCBI GI: 45593138
Description:

leucine rich repeat containing 25

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         29           2
 C cysteine            3.9         12           1
 D aspartate           6.2         19           1
 E glutamate           4.9         15           3
 F phenylalanine       2.3          7           2
 G glycine             6.6         20           2
 H histidine           2.3          7           1
 I isoleucine          2.3          7           1
 K lysine              2.0          6           1
 L leucine            14.4         44           3
 M methionine          1.0          3           1
 N asparagine          4.9         15           1
 P proline             7.2         22           1
 Q glutamine           4.6         14           1
 R arginine            4.9         15           2
 S serine              9.5         29           2
 T threonine           3.0          9           2
 V valine              5.9         18           3
 W tryptophan          2.6          8           1
 Y tyrosine            2.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 25 
KIAA0644              0.018   hypothetical protein LOC9865 
FAT4                  0.016   FAT tumor suppressor homolog 4 
IGFALS                0.016   insulin-like growth factor binding protein, acid la...
IGFALS                0.016   insulin-like growth factor binding protein, acid labi...
SLIT2                 0.016   slit homolog 2 
AMIGO1                0.015   AMIGO protein 
GP5                   0.015   glycoprotein V (platelet) 
LRRC55                0.013   leucine rich repeat containing 55 
LRRC32                0.013   leucine rich repeat containing 32 precursor 
LRRC32                0.013   leucine rich repeat containing 32 precursor 
FLRT2                 0.012   fibronectin leucine rich transmembrane protein 2 [Hom...
LRG1                  0.012   leucine-rich alpha-2-glycoprotein 1 
LRRC15                0.012   leucine rich repeat containing 15 isoform a 
LRRC15                0.012   leucine rich repeat containing 15 isoform b 
VASN                  0.012   slit-like 2 
KANK3                 0.012   ankyrin repeat domain 47 
LGR6                  0.012   leucine-rich repeat-containing G protein-coupled rec...
EFNB3                 0.010   ephrin-B3 precursor 
TLR3                  0.010   toll-like receptor 3 
LRRC3                 0.010   leucine-rich repeat-containing 3 precursor 
LRRK1                 0.010   leucine-rich repeat kinase 1 
LRRC4C                0.010   netrin-G1 ligand 
RXFP1                 0.008   relaxin/insulin-like family peptide receptor 1 [Homo...
HERC2                 0.008   hect domain and RLD 2 
DFNB31                0.008   CASK-interacting protein CIP98 isoform 2 
DFNB31                0.008   CASK-interacting protein CIP98 isoform 1 
LINGO2                0.008   leucine rich repeat and Ig domain containing 2 [Homo...
LRRC59                0.008   leucine rich repeat containing 59 
LRRC66                0.008   leucine rich repeat containing 66 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press