Guide to the Human Genome
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Name: LRRC66 Sequence: fasta or formatted (880aa) NCBI GI: 66912176
Description:

leucine rich repeat containing 66

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         55           2
 C cysteine            1.9         17           2
 D aspartate           6.5         57           2
 E glutamate           6.0         53           2
 F phenylalanine       3.8         33           2
 G glycine             5.6         49           2
 H histidine           3.1         27           1
 I isoleucine          4.7         41           2
 K lysine              5.7         50           2
 L leucine             9.8         86           2
 M methionine          1.2         11           2
 N asparagine          4.7         41           2
 P proline             5.9         52           2
 Q glutamine           4.4         39           2
 R arginine            5.1         45           2
 S serine             11.9        105           3
 T threonine           5.2         46           1
 V valine              4.8         42           2
 W tryptophan          1.7         15           1
 Y tyrosine            1.8         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 66 
LRRC15                0.030   leucine rich repeat containing 15 isoform a 
LRRC15                0.030   leucine rich repeat containing 15 isoform b 
LRFN4                 0.026   leucine rich repeat and fibronectin type III domain ...
LGR5                  0.024   leucine-rich repeat-containing G protein-coupled rece...
LRFN3                 0.023   leucine rich repeat and fibronectin type III domain ...
ISLR                  0.022   immunoglobulin superfamily containing leucine-rich r...
ISLR                  0.022   immunoglobulin superfamily containing leucine-rich re...
LRRC70                0.022   synleurin 
LRFN5                 0.021   leucine rich repeat and fibronectin type III domain ...
LRG1                  0.021   leucine-rich alpha-2-glycoprotein 1 
CPN2                  0.021   carboxypeptidase N, polypeptide 2, 83kD 
LRFN2                 0.020   leucine rich repeat and fibronectin type III domain ...
LGR6                  0.020   leucine-rich repeat-containing G protein-coupled rec...
SLIT3                 0.020   slit homolog 3 
LRRC39                0.020   leucine rich repeat containing 39 
SLIT2                 0.020   slit homolog 2 
PODN                  0.020   podocan 
SLIT1                 0.020   slit homolog 1 
LRRTM2                0.019   leucine rich repeat transmembrane neuronal 2 
LGR6                  0.019   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.019   leucine-rich repeat-containing G protein-coupled rec...
PXDNL                 0.019   peroxidasin homolog-like 
LRFN1                 0.019   leucine rich repeat and fibronectin type III domain...
IGFALS                0.018   insulin-like growth factor binding protein, acid la...
IGFALS                0.018   insulin-like growth factor binding protein, acid labi...
LRTM2                 0.018   leucine-rich repeats and transmembrane domains 2 [Ho...
PODNL1                0.018   podocan-like 1 isoform 2 
PODNL1                0.018   podocan-like 1 isoform 1 
TLR5                  0.018   toll-like receptor 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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