Guide to the Human Genome
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Name: TGFB1I1 Sequence: fasta or formatted (461aa) NCBI GI: 109638745
Description:

transforming growth factor beta 1 induced transcript 1 isoform 1

Referenced in:

LIM Domain Proteins
Nuclear Receptors
TGF-beta Family
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [444aa] transforming growth factor beta 1 induced transcript 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         30           2
 C cysteine            5.9         27           2
 D aspartate           4.1         19           1
 E glutamate           6.1         28           1
 F phenylalanine       6.1         28           2
 G glycine             9.5         44           2
 H histidine           3.7         17           1
 I isoleucine          1.3          6           1
 K lysine              3.7         17           2
 L leucine             8.9         41           2
 M methionine          1.3          6           1
 N asparagine          1.7          8           1
 P proline            10.4         48           3
 Q glutamine           3.9         18           1
 R arginine            5.9         27           2
 S serine             10.4         48           4
 T threonine           5.4         25           3
 V valine              3.3         15           2
 W tryptophan          0.7          3           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transforming growth factor beta 1 induced transcrip... 
TGFB1I1               0.967   transforming growth factor beta 1 induced transcript...
PXN                   0.433   paxillin isoform 2 
PXN                   0.432   paxillin isoform 1 
PXN                   0.410   paxillin isoform 3 
LPXN                  0.366   leupaxin isoform 2 
LPXN                  0.363   leupaxin isoform 1 
LDB3                  0.153   LIM domain binding 3 isoform 2 
LDB3                  0.153   LIM domain binding 3 isoform 1 
PDLIM5                0.150   PDZ and LIM domain 5 isoform b 
PDLIM5                0.150   PDZ and LIM domain 5 isoform a 
PDLIM7                0.148   PDZ and LIM domain 7 isoform 1 
PDLIM7                0.146   PDZ and LIM domain 7 isoform 2 
LIMS2                 0.116   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.116   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.116   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.116   LIM and senescent cell antigen-like domains 2 isofor...
LIMS1                 0.114   LIM and senescent cell antigen-like domains 1 
ZYX                   0.101   zyxin 
ZYX                   0.101   zyxin 
FBLIM1                0.100   filamin-binding LIM protein-1 isoform a 
FHL3                  0.099   four and a half LIM domains 3 
ABLIM3                0.094   actin binding LIM protein family, member 3 
ABLIM1                0.093   actin-binding LIM protein 1 isoform c 
ABLIM1                0.093   actin-binding LIM protein 1 isoform b 
ABLIM1                0.093   actin-binding LIM protein 1 isoform a 
FBLIM1                0.091   filamin-binding LIM protein-1 isoform c 
FHL5                  0.091   activator of cAMP-responsive element modulator (CREM...
FHL2                  0.091   four and a half LIM domains 2 
FHL2                  0.091   four and a half LIM domains 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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