Guide to the Human Genome
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Name: FHL3 Sequence: fasta or formatted (280aa) NCBI GI: 54112385
Description:

four and a half LIM domains 3

Referenced in:

LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         14           1
 C cysteine           12.5         35           2
 D aspartate           5.4         15           1
 E glutamate           6.1         17           1
 F phenylalanine       5.7         16           1
 G glycine             8.9         25           3
 H histidine           3.6         10           2
 I isoleucine          1.1          3           1
 K lysine              3.2          9           1
 L leucine             5.7         16           2
 M methionine          0.7          2           1
 N asparagine          2.1          6           1
 P proline             5.4         15           1
 Q glutamine           6.1         17           2
 R arginine            5.7         16           1
 S serine              8.6         24           2
 T threonine           4.6         13           1
 V valine              4.3         12           1
 W tryptophan          1.1          3           1
 Y tyrosine            4.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   four and a half LIM domains 3 
FHL2                  0.581   four and a half LIM domains 2 
FHL2                  0.581   four and a half LIM domains 2 
FHL2                  0.581   four and a half LIM domains 2 
FHL2                  0.581   four and a half LIM domains 2 
FHL5                  0.511   activator of cAMP-responsive element modulator (CREM...
FHL1                  0.447   four and a half LIM domains 1 isoform 2 
FHL1                  0.447   four and a half LIM domains 1 isoform 2 
FHL1                  0.447   four and a half LIM domains 1 isoform 3 
FHL1                  0.447   four and a half LIM domains 1 isoform 5 
FHL1                  0.447   four and a half LIM domains 1 isoform 2 
FHL1                  0.384   four and a half LIM domains 1 isoform 1 
FHL1                  0.258   four and a half LIM domains 1 isoform 4 
LPXN                  0.156   leupaxin isoform 1 
LPXN                  0.156   leupaxin isoform 2 
TGFB1I1               0.156   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.156   transforming growth factor beta 1 induced transcript...
PDLIM5                0.154   PDZ and LIM domain 5 isoform b 
PDLIM5                0.154   PDZ and LIM domain 5 isoform a 
LDB3                  0.154   LIM domain binding 3 isoform 2 
LDB3                  0.154   LIM domain binding 3 isoform 1 
PXN                   0.154   paxillin isoform 3 
PXN                   0.154   paxillin isoform 2 
PXN                   0.154   paxillin isoform 1 
LIMS1                 0.151   LIM and senescent cell antigen-like domains 1 
PDLIM7                0.148   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.148   PDZ and LIM domain 7 isoform 1 
LIMS2                 0.148   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.146   LIM and senescent cell antigen-like domains 2 isofor...
LIMS2                 0.144   LIM and senescent cell antigen-like domains 2 isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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