Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 13128992

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13128992 hypothetical protein MGC2803 [Homo sapiens]
         (176 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13128992 hypothetical protein MGC2803 [Homo sapiens]               361   e-100
gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens]               42   3e-04
gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens]        40   0.001
gi|4504733 insulin receptor substrate 4 [Homo sapiens]                 39   0.002
gi|114155142 nuclear pore complex-associated protein TPR [Homo s...    39   0.002
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s...    38   0.004
gi|239749709 PREDICTED: hypothetical protein [Homo sapiens]            38   0.005
gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens]              38   0.005
gi|83977459 pleckstrin homology-like domain, family A, member 1 ...    38   0.005
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            37   0.007
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]           37   0.007
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ...    37   0.007
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [...    37   0.007
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      37   0.009
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]    37   0.009
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       37   0.012
gi|26051273 voltage-gated potassium channel, subfamily H, member...    37   0.012
gi|4557729 voltage-gated potassium channel, subfamily H, member ...    37   0.012
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso...    37   0.012
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso...    37   0.012
gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]           36   0.015
gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo ...    36   0.015
gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo ...    36   0.015
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    36   0.015
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    36   0.015
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    36   0.015
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ...    36   0.020
gi|5803080 macrophage receptor with collagenous structure [Homo ...    36   0.020
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    36   0.020
gi|166795264 AE binding protein 2 isoform b [Homo sapiens]             36   0.020

>gi|13128992 hypothetical protein MGC2803 [Homo sapiens]
          Length = 176

 Score =  361 bits (927), Expect = e-100
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA 60
           MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA
Sbjct: 1   MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA 60

Query: 61  NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120
           NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR
Sbjct: 61  NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120

Query: 121 GGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 176
           GGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK
Sbjct: 121 GGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 176


>gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens]
          Length = 465

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 26/127 (20%)

Query: 3   ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGD---------EEVSGAGSSPVS 53
           A+ R   P  R  P       GG+    +G G    +G           +++GA   P  
Sbjct: 238 AKRRTRVPPSRRGPDAVAAPPGGTERRPNGLGPERSAGPGGAEAEPLPTQLNGAPGEPAP 297

Query: 54  GGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG--------PGDPKR 105
            G      D   L+L     EE       E PPGP+RP++     G        PGD   
Sbjct: 298 AG----PRDTDALDL-----EESSSSDHAERPPGPRRPERGPRGKGKARASQVKPGDSLP 348

Query: 106 KGGPGST 112
           + GPG+T
Sbjct: 349 RRGPGAT 355


>gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens]
          Length = 601

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 2   AARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNL--F 59
           A +  ++      +PGP G G   S++AES S     SG E +     S   G +     
Sbjct: 248 ARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGEL 307

Query: 60  ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-----PGDPKRKGGPGSTLS 114
             D S+ E+ K+K  ++ ++++++     +R  +S  + G      G+     GP  ++ 
Sbjct: 308 VIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIP 367

Query: 115 FVGKRRGGNKL-ALKTGIVAKKQKTEDE 141
           + G       L  L T   ++K+K ++E
Sbjct: 368 YAGAAAPPLPLPGLHTDGHSEKKKKKEE 395


>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
          Length = 1257

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 5   GRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGS 64
           G +    G+   G  G GGG       GSG     GD   SG G +   GG    +  GS
Sbjct: 542 GNQCSRDGQGTAGGHGSGGGQRPGGGHGSGGGQGPGDGHGSGGGKNS-GGGKGSGSGKGS 600

Query: 65  ------FLELFKR----KMEEEQRQRQEEPPPGPQRPDQSAAAAGPG 101
                    L KR    K+ + ++Q+   PPP P  P  +    G G
Sbjct: 601 DGDGERGKSLKKRSYFGKLTQSKQQQMPPPPPPPPPPPPAGGTGGKG 647



 Score = 33.9 bits (76), Expect = 0.075
 Identities = 34/116 (29%), Positives = 37/116 (31%), Gaps = 24/116 (20%)

Query: 12  GREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKR 71
           GR + G  G  G GS    SG       G     G GS+    G N  + DG        
Sbjct: 498 GRGSGGGQGSNGQGSSSHSSGGNQCSGEGQGSRGGQGSNGQGSGGNQCSRDG-------- 549

Query: 72  KMEEEQRQRQEEPPPGPQRP---DQSAAAAGPGDPKRKGGPGSTLSFVGKRRGGNK 124
                Q         G QRP     S    GPGD    GG        GK  GG K
Sbjct: 550 -----QGTAGGHGSGGGQRPGGGHGSGGGQGPGDGHGSGG--------GKNSGGGK 592


>gi|114155142 nuclear pore complex-associated protein TPR [Homo
            sapiens]
          Length = 2363

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 38/140 (27%), Positives = 53/140 (37%), Gaps = 12/140 (8%)

Query: 14   EAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAG-------SSPVSGGVNLFANDGSF 65
            E  G A G  G  +  AE G GT P +  EE  G G        S  SG  N  A + SF
Sbjct: 1990 EGTGSADGNDGYEADDAEGGDGTDPGTETEESMGGGEGNHRAADSQNSGEGNTGAAESSF 2049

Query: 66   LELFKRKMEEEQRQRQEEP--PPGPQRPDQ--SAAAAGPGDPKRKGGPGSTLSFVGKRRG 121
             +   R+ +      ++ P  P  P+RP             P+  G P   +    ++  
Sbjct: 2050 SQEVSREQQPSSASERQAPRAPQSPRRPPHPLPPRLTIHAPPQELGPPVQRIQMTRRQSV 2109

Query: 122  GNKLALKTGIVAKKQKTEDE 141
            G  L L  GI   +Q   D+
Sbjct: 2110 GRGLQLTPGIGGMQQHFFDD 2129


>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
           sapiens]
          Length = 940

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 12  GREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKR 71
           G   PGP GG GG       G    P  GD    G G  P+ GG  +    G     + R
Sbjct: 648 GGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGD-PMRGGP-MRGGPGPGPGPYHR 705

Query: 72  KMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120
                 R   E PPP P         +G G P  +GGPG  +   G  R
Sbjct: 706 G--RGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHR 752



 Score = 31.6 bits (70), Expect = 0.37
 Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 3   ARGRRA---EPQGREAPGPAGGGGGGSRWAES-GSGTSPESGDEEVSGAGSSPVSG 54
           ARG R+    P GR  PG    GGGG R  E  G G    SG     G G    SG
Sbjct: 725 ARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSG 780



 Score = 27.3 bits (59), Expect = 7.0
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 14  EAPGPA-GGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGG 55
           E PG + GGGGG       G G S  SG     G G    +GG
Sbjct: 785 EGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGG 827


>gi|239749709 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 38/132 (28%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 4   RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63
           R RRAE  G EA      GG      ++GS    E G  E    G  P    +   A  G
Sbjct: 42  RSRRAEGGGAEAAAARTAGGEPRAQRQAGSQADEEGGRPERVNHGQVPQGERLRAMAKGG 101

Query: 64  SFLELFKRKMEEEQRQRQEEPPPGPQRPDQS--AAAAGPGDPKRKGGPGSTLSFVGKRRG 121
                       +  +RQ   P    R   S    AAG G  +R+ G   T S  G R G
Sbjct: 102 V-------GKGSQGAERQASRPHAEHRLGLSHLTRAAGAGAARRRAGAARTRSPKGCRAG 154

Query: 122 GNKLALKTGIVA 133
             +L    G  A
Sbjct: 155 AARLERAGGPAA 166


>gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens]
          Length = 496

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 17  GPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKRKMEEE 76
           G +GGGGGG      GS   P     E  G G S V         D     + +R  +  
Sbjct: 25  GGSGGGGGGDEDGSLGSRAEPAPRAREGGGCGRSEVRPVAPRRPRDA----VGQRGAQGA 80

Query: 77  QRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110
            R+R+   PP P     + A +   D    GGPG
Sbjct: 81  GRRRRAGGPPRPMSEPGAGAGSSLLDVAEPGGPG 114


>gi|83977459 pleckstrin homology-like domain, family A, member 1
           [Homo sapiens]
          Length = 401

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 30/117 (25%)

Query: 22  GGGGSRWAE-------------SGSGTSPESGDEEVSG-----AGSSPVSGGVNLFANDG 63
           GG GSRW E             +G+G +  SG    +G     +G   +  GV    +DG
Sbjct: 103 GGRGSRWGEDGARLLLLPPARAAGNGEAEPSGGPSYAGRMLESSGCKALKEGVLEKRSDG 162

Query: 64  SFLELFKRK-----------MEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGP 109
             L+L+K+K           +  +Q Q Q++     Q+  Q     GP +P +  GP
Sbjct: 163 -LLQLWKKKCCILTEEGLLLIPPKQLQHQQQQQQQQQQQQQQQPGQGPAEPSQPSGP 218


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 35/181 (19%)

Query: 2   AARGRRAEPQGREAPGPAGGGGGGSRWAESG---------------SGTSPESGDEEVSG 46
           A  G +   +GR   GP   GG   RW   G               +GT    G ++ + 
Sbjct: 292 ATAGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAA 351

Query: 47  A------------GSSP------VSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGP 88
                        G  P       +G  +    D   L   KR+ +  ++ R + P    
Sbjct: 352 VVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRA 411

Query: 89  QRPDQSAAAAGPGDPKRKGGPGSTLSFVGK-RRGGNKLALKTGIVAKKQKTEDEVLTSKG 147
           Q+   +    G     R+ GP +  S  GK R GG K   + G  A +QK  +    S+G
Sbjct: 412 QKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKA-RQKAAEAGAESRG 470

Query: 148 D 148
           D
Sbjct: 471 D 471



 Score = 31.6 bits (70), Expect = 0.37
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 36/172 (20%)

Query: 2   AARGRRAEPQGREAPGPAGGGGGGSRW---AESGSGTSPESGDEEVSGAGSSPVSGGVNL 58
           AA G++A  +G++  G   G      W   A +G   +   G+++ + AG+  + G    
Sbjct: 65  AAGGKKARLRGQK--GAVAGKEARQHWQKAAGAGGAENRGGGEQKAAAAGTKSLGG---- 118

Query: 59  FANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGK 118
                              R R+      P+R  Q AAA G   P+ +    +      +
Sbjct: 119 -------------------RGRK------PRRRGQKAAATGSKKPRWRAQKSAAAGSKNR 153

Query: 119 RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDK 170
             G  K A   G+  K Q  E     +   A ++   + ++  A   GD+DK
Sbjct: 154 GAGAQKAAAAAGV--KSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDK 203



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 1   MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA 60
           +  RGR+   +G++A   A  G    RW    S  +         GAG+   +    + +
Sbjct: 116 LGGRGRKPRRRGQKA---AATGSKKPRWRAQKSAAAGSKN----RGAGAQKAAAAAGVKS 168

Query: 61  NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120
             G          E+ Q+           +  +   A   GD  +KG      S  GK R
Sbjct: 169 QGG----------EKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKTR 218

Query: 121 GGNK 124
           GG +
Sbjct: 219 GGRR 222



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 12  GREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGG 55
           G++A      GGGG++    G G    SG++ V+  G    + G
Sbjct: 750 GKKAAASKSHGGGGAK-RRRGGGAKSRSGEKAVTAGGQKAAAAG 792


>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
          Length = 306

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 26/93 (27%), Positives = 35/93 (37%)

Query: 19  AGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKRKMEEEQR 78
           A      +  A  G G+ P      V GAG     G      + G+ LE  + + EE   
Sbjct: 3   AAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLL 62

Query: 79  QRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGS 111
           + + EP P  + P   A    PG     G PGS
Sbjct: 63  EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGS 95



 Score = 32.7 bits (73), Expect = 0.17
 Identities = 21/86 (24%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 6   RRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSF 65
           R   P G   PGP  G  G     E       + GD  +       +   V     +   
Sbjct: 76  RPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEA-- 133

Query: 66  LELFKRKMEEEQRQRQEEPPPGPQRP 91
            E  K    E ++Q    PPPG   P
Sbjct: 134 -EKLKELQNEVEKQMNMSPPPGNAGP 158



 Score = 32.0 bits (71), Expect = 0.28
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 15  APGPAGGGGGG-SRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKRKM 73
           A G AGG G G  R      G   E+G+    GAG      G  L + +   LE  +  +
Sbjct: 10  AAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDY----GNGLESEE---LEPEELLL 62

Query: 74  EEEQRQRQEEPPPGPQRPDQSAA----AAGPGDPKRKGGPG 110
           E E     EE PP P+ P  +      +  PG  + +  PG
Sbjct: 63  EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPG 103


>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
            sapiens]
          Length = 1899

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 22/127 (17%)

Query: 1    MAARGRRAEPQGREAPGPAGGGGGGSRWAESG----SGTSPESGDE-EVSGAG------- 48
            M  RG    P    +PG  G  G   +  + G    SG   E GD  +++          
Sbjct: 1686 MGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVAR 1745

Query: 49   ---SSPVSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPK 104
                  +SG +N F       ++  +   + Q  R +  PPGP  P  SA A G PG   
Sbjct: 1746 QVCEQLISGQMNRFN------QMLNQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGG 1799

Query: 105  RKGGPGS 111
            R G PG+
Sbjct: 1800 RPGFPGT 1806



 Score = 32.3 bits (72), Expect = 0.22
 Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 16/107 (14%)

Query: 16   PGPAGGGGG----GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKR 71
            PGPAGG G     G R      G     GD    G    P   G N  +  G        
Sbjct: 1588 PGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPG-------- 1639

Query: 72   KMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGK 118
               E+ RQ  +     P  P ++     PG P   G PG    F GK
Sbjct: 1640 ---EQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDR-GFTGK 1682



 Score = 27.7 bits (60), Expect = 5.4
 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 4    RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLFAND 62
            RG    P  +  PGP G  G      +   G   ++G+  + G   +P + G        
Sbjct: 1615 RGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPP 1674

Query: 63   GSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110
            G     F  K      +    PP  P  P  +  +  PG P   G PG
Sbjct: 1675 GD--RGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPG 1720


>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
            sapiens]
          Length = 3063

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 22/127 (17%)

Query: 1    MAARGRRAEPQGREAPGPAGGGGGGSRWAESG----SGTSPESGDE-EVSGAG------- 48
            M  RG    P    +PG  G  G   +  + G    SG   E GD  +++          
Sbjct: 2850 MGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVAR 2909

Query: 49   ---SSPVSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPK 104
                  +SG +N F       ++  +   + Q  R +  PPGP  P  SA A G PG   
Sbjct: 2910 QVCEQLISGQMNRFN------QMLNQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGG 2963

Query: 105  RKGGPGS 111
            R G PG+
Sbjct: 2964 RPGFPGT 2970



 Score = 32.3 bits (72), Expect = 0.22
 Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 16/107 (14%)

Query: 16   PGPAGGGGG----GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKR 71
            PGPAGG G     G R      G     GD    G    P   G N  +  G        
Sbjct: 2752 PGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPG-------- 2803

Query: 72   KMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGK 118
               E+ RQ  +     P  P ++     PG P   G PG    F GK
Sbjct: 2804 ---EQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDR-GFTGK 2846



 Score = 28.9 bits (63), Expect = 2.4
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 117  GKRRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKA--HQCGDDDKTRPL 174
            GK R G+          +  KT D  ++S    W     EVK YK   H  GDD +   L
Sbjct: 1074 GKLRQGSGTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGEL 1133

Query: 175  V 175
            V
Sbjct: 1134 V 1134



 Score = 27.7 bits (60), Expect = 5.4
 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 4    RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLFAND 62
            RG    P  +  PGP G  G      +   G   ++G+  + G   +P + G        
Sbjct: 2779 RGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPP 2838

Query: 63   GSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110
            G     F  K      +    PP  P  P  +  +  PG P   G PG
Sbjct: 2839 GD--RGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPG 2884


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 12/122 (9%)

Query: 5   GRRAEPQGREAPGPAGGGG-------GGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVN 57
           G+   P  R  PGP G  G        G +     SG     GD   +G    P S G N
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 295

Query: 58  LFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVG 117
                G+  ++  R +  E+ +     P G +  D +  AAGP  P    GP      VG
Sbjct: 296 -----GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG 350

Query: 118 KR 119
            +
Sbjct: 351 AK 352



 Score = 37.0 bits (84), Expect = 0.009
 Identities = 37/113 (32%), Positives = 43/113 (38%), Gaps = 19/113 (16%)

Query: 1   MAARGRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLF 59
           M  RG   E     APGPAG  G  G+  A    G +  +G     GA  +    G    
Sbjct: 301 MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQ-- 358

Query: 60  ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGP-GDPKRKGGPGS 111
                      R  E  Q  R E  PPGP      A AAGP G+P   G PG+
Sbjct: 359 ---------GPRGSEGPQGVRGEPGPPGP------AGAAGPAGNPGADGQPGA 396



 Score = 33.9 bits (76), Expect = 0.075
 Identities = 33/122 (27%), Positives = 38/122 (31%), Gaps = 14/122 (11%)

Query: 5   GRRAEPQGREAPGPAGGGG-GGSRWAESGSGTSPESGDEEVSGAGSSP----VSGGVNLF 59
           G R  P  R  PGP G  G  G   A+   G   E GD    G    P     +G     
Sbjct: 794 GARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853

Query: 60  ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKR 119
            N G+            +  R    PPG      +A   GP  P    GP       GK 
Sbjct: 854 GNVGA---------PGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE 904

Query: 120 RG 121
            G
Sbjct: 905 GG 906



 Score = 33.1 bits (74), Expect = 0.13
 Identities = 36/134 (26%), Positives = 42/134 (31%), Gaps = 27/134 (20%)

Query: 4   RGRRAEPQGREAPGPAG-GGGGGSRWAESGSGTS----------------PESGDEEVSG 46
           RG R EP     PGP G  GG GSR      G +                P+    E   
Sbjct: 469 RGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR 528

Query: 47  AGSSPVSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQR----------PDQSAA 96
            G + + G   L  + GS     K        Q     PPGP            P    A
Sbjct: 529 PGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGA 588

Query: 97  AAGPGDPKRKGGPG 110
           A  PG    +G PG
Sbjct: 589 AGEPGKAGERGVPG 602



 Score = 32.0 bits (71), Expect = 0.28
 Identities = 30/109 (27%), Positives = 36/109 (33%), Gaps = 35/109 (32%)

Query: 10  PQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELF 69
           P  R   GP G GG       SG   +P  G +  +GA   P   GV             
Sbjct: 412 PGARGPSGPQGPGGPPGPKGNSGEPGAP--GSKGDTGAKGEPGPVGV------------- 456

Query: 70  KRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-------PGDPKRKGGPGS 111
                        + PPGP   +    A G       PG P  +GGPGS
Sbjct: 457 -------------QGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492



 Score = 31.6 bits (70), Expect = 0.37
 Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 31/125 (24%)

Query: 16   PGPAGGGGGGSRWAESG-------------SGTSPESGDEEVSGAGSSPVSGGVNLFAND 62
            PGPAG  GG     E+G              G + E G     G   +P + G    A  
Sbjct: 898  PGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ 957

Query: 63   GSFLELFKRKME-----------EEQRQ-----RQEEPPPGPQRPDQSAAAAGPGDPKRK 106
               + L  ++ E           E  +Q       E  PPGP  P     A  PG+  R+
Sbjct: 958  RGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP--PGLAGPPGESGRE 1015

Query: 107  GGPGS 111
            G PG+
Sbjct: 1016 GAPGA 1020



 Score = 31.2 bits (69), Expect = 0.49
 Identities = 31/121 (25%), Positives = 40/121 (33%), Gaps = 21/121 (17%)

Query: 5   GRRAEPQGREAPGPAGGGGGGSRWAESGSG-----TSPESGDEEVSGAGSSPVSGGVNLF 59
           G+  E   +  PGPAG  G       +GS        P     E    G   V G +   
Sbjct: 611 GKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP 670

Query: 60  ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG----------PGDPKRKGGP 109
              G+      R       +R  + PPGP  P  +  A G          PG P  +G P
Sbjct: 671 GPSGA------RGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP 724

Query: 110 G 110
           G
Sbjct: 725 G 725



 Score = 30.8 bits (68), Expect = 0.63
 Identities = 31/110 (28%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 5   GRRAEPQGREAPGPAGGGG----GGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA 60
           G + +     APG  G  G     G R A    G   + GD    GA  SP   GV    
Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR--- 763

Query: 61  NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110
             G    +           + E  P GP  P  + A   PGD    G PG
Sbjct: 764 --GLTGPIGPPGPAGAPGDKGESGPSGPAGP--TGARGAPGDRGEPGPPG 809



 Score = 28.5 bits (62), Expect = 3.1
 Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 11/113 (9%)

Query: 5    GRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGS 64
            G    P    APGP G  G      E+G    P      V   G+   +G      + G 
Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETG----PAGPAGPVGPVGARGPAGPQGPRGDKGE 1098

Query: 65   FLELFKRKMEEEQRQRQEEPPPGP------QRPDQSAAAAGPGDPK-RKGGPG 110
              E   R ++  +     + PPGP      Q P  ++  AGP  P    G PG
Sbjct: 1099 TGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPG 1151



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 3   ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGV 56
           ARG R  P  R   GP   G  G R A    G     GD    GA  S  + G+
Sbjct: 675 ARGERGFPGERGVQGPP--GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGL 726



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 34/125 (27%), Positives = 39/125 (31%), Gaps = 30/125 (24%)

Query: 3    ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSP-------------ESGDEEVSGAGS 49
            A G R  P     PG AG  G   R    G+  SP             E+G     GA  
Sbjct: 990  ASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPG 1049

Query: 50   SP-VSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPK-RKG 107
            +P   G V      G                R E  P GP  P     A GP  P+  +G
Sbjct: 1050 APGAPGPVGPAGKSG---------------DRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094

Query: 108  GPGST 112
              G T
Sbjct: 1095 DKGET 1099


>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
          Length = 753

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 16/104 (15%)

Query: 18  PAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKRKMEEEQ 77
           P+GGGGGGS     G G+S  S      GAG    +   +    D               
Sbjct: 395 PSGGGGGGS----GGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNA 450

Query: 78  RQRQEEPPPGPQRPDQS------------AAAAGPGDPKRKGGP 109
             +   PP GP  P  S            A    PG     GGP
Sbjct: 451 SSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGP 494


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 7    RAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLFANDGSF 65
            R  PQG   PGPAG  G     A    G    +G + + G    P  +G V     DG  
Sbjct: 1106 RPGPQG--PPGPAGEKG-----APGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDK 1158

Query: 66   LELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKR 119
             E+ +   +  +  + E+ PPGP  P       GP     + GP       G++
Sbjct: 1159 GEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQK 1212



 Score = 30.8 bits (68), Expect = 0.63
 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 18/120 (15%)

Query: 4    RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSP----------ESGDEEVSGAGSSPVS 53
            +G + +   +  PGP G  G   +   SG+   P          + GDE   G    P  
Sbjct: 1167 KGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPP-- 1224

Query: 54   GGVNLFANDGSFLELFKRKMEEEQRQRQEEP-PPGPQRPDQSAAAAGP-GDPKRKGGPGS 111
            G V L    G   E    K E     +   P PPGP+ P  +  A GP G P   G PG+
Sbjct: 1225 GPVGLQGLPGPPGE----KGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGA 1280



 Score = 29.3 bits (64), Expect = 1.8
 Identities = 30/106 (28%), Positives = 35/106 (33%), Gaps = 24/106 (22%)

Query: 5   GRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63
           G   E  G+  PGP G  G  G R  +   G     G +   G    P   G      D 
Sbjct: 769 GPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGD- 827

Query: 64  SFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGP 109
                           R E  PPGP+  D      GP  PK +GGP
Sbjct: 828 ----------------RGEIGPPGPRGED------GPEGPKGRGGP 851



 Score = 28.9 bits (63), Expect = 2.4
 Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 11/110 (10%)

Query: 5    GRRAEPQGREAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63
            G    P  R  PGPAG  G  G + A+  +G     G     G   +P   G      DG
Sbjct: 1384 GPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGP-----DG 1438

Query: 64   SFLELFKRKMEEEQRQRQEEP--PPGPQRPDQSAAAAGPGDPK-RKGGPG 110
              L      + E+       P  PPGP  P       G   PK  KG PG
Sbjct: 1439 --LRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPG 1486



 Score = 27.7 bits (60), Expect = 5.4
 Identities = 32/110 (29%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 4   RGRRAEPQGREAPGPAGGGGGGSRWAESG-SGTSPESGDEEVSGAGSSPVSGGVNLFAND 62
           RGR      R  PG  G  G       +G  G     GD   SG    P   G     +D
Sbjct: 609 RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGER--GDD 666

Query: 63  GSFLELFKRKMEEEQRQRQ---EEPPPGPQRPDQSAAAAGPGDPKRKGGP 109
           G   E+  R +  E   R     + PPGP  P       G   PK   GP
Sbjct: 667 G---EVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGP 713



 Score = 27.3 bits (59), Expect = 7.0
 Identities = 32/110 (29%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 3    ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAND 62
            A G + EP     PG  G GG      E G     E G+   SGA   P   G     +D
Sbjct: 1280 AVGEKGEPGEAGEPGLPGEGGPPGPKGERG-----EKGESGPSGAAGPPGPKGPP--GDD 1332

Query: 63   GSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGST 112
            G        K          +P P P  P  +     PGD    G PG T
Sbjct: 1333 GP-------KGSPGPVGFPGDPGP-PGEPGPAGQDGPPGDKGDDGEPGQT 1374


>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
           isoform c [Homo sapiens]
          Length = 819

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 12  GREAPGPAGGGGGGSRWAESGSG--TSPESGDEEVSGAGSSPV 52
           GR   GP+  G  G  W ES S   +SPES ++E  G  SSP+
Sbjct: 571 GRAGAGPSSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPL 613


>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
           isoform a [Homo sapiens]
          Length = 1159

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 12  GREAPGPAGGGGGGSRWAESGSG--TSPESGDEEVSGAGSSPV 52
           GR   GP+  G  G  W ES S   +SPES ++E  G  SSP+
Sbjct: 911 GRAGAGPSSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPL 953


>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
           isoform d [Homo sapiens]
          Length = 756

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 37/120 (30%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 4   RGRRAEPQGREAPGPAGGGGGG--SRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61
           RG     Q  E  GP GG  GG  +R   SG G +   G     G G S    G N   N
Sbjct: 520 RGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWGNNNRDN 579

Query: 62  DGSFLELFKRKMEEEQRQRQEEPPP------GPQRPDQSAAAAGPGDP---KRKGGPGST 112
           + S       +  ++Q   Q+ PPP       P  P  S A   PG     K    PGS+
Sbjct: 580 NNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSS 639


>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
           isoform a [Homo sapiens]
          Length = 856

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 37/120 (30%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 4   RGRRAEPQGREAPGPAGGGGGG--SRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61
           RG     Q  E  GP GG  GG  +R   SG G +   G     G G S    G N   N
Sbjct: 620 RGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWGNNNRDN 679

Query: 62  DGSFLELFKRKMEEEQRQRQEEPPP------GPQRPDQSAAAAGPGDP---KRKGGPGST 112
           + S       +  ++Q   Q+ PPP       P  P  S A   PG     K    PGS+
Sbjct: 680 NNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSS 739


>gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]
          Length = 410

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 9   EPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLEL 68
           +P   EA    GG G   RW   GSG +  +G      A  +PV  G      +      
Sbjct: 28  QPLLSEAGSGQGGAGLHPRWVWGGSGGAVGTGRRGGGAARPAPVRRGSPSSPGE------ 81

Query: 69  FKRKMEEEQRQRQEEP-----PPGPQRPDQSAAAAGPGDPKRKGGPGS 111
              + EE+ R     P     P  P+ P     +  PG P   G PGS
Sbjct: 82  -PYRPEEDSRMTPASPEARTSPVHPKFPKIPETSVAPGSPATAGPPGS 128


>gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo
           sapiens]
          Length = 410

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 9   EPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLEL 68
           +P   EA    GG G   RW   GSG +  +G      A  +PV  G      +      
Sbjct: 28  QPLLSEAGSGQGGAGLHPRWVWGGSGGAVGTGRRGGGAARPAPVRRGSPSSPGE------ 81

Query: 69  FKRKMEEEQRQRQEEP-----PPGPQRPDQSAAAAGPGDPKRKGGPGS 111
              + EE+ R     P     P  P+ P     +  PG P   G PGS
Sbjct: 82  -PYRPEEDSRMTPASPEARTSPVHPKFPKIPETSVAPGSPATAGPPGS 128


>gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo
           sapiens]
          Length = 410

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 9   EPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLEL 68
           +P   EA    GG G   RW   GSG +  +G      A  +PV  G      +      
Sbjct: 28  QPLLSEAGSGQGGAGLHPRWVWGGSGGAVGTGRRGGGAARPAPVRRGSPSSPGE------ 81

Query: 69  FKRKMEEEQRQRQEEP-----PPGPQRPDQSAAAAGPGDPKRKGGPGS 111
              + EE+ R     P     P  P+ P     +  PG P   G PGS
Sbjct: 82  -PYRPEEDSRMTPASPEARTSPVHPKFPKIPETSVAPGSPATAGPPGS 128


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 2    AARGRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLF 59
            A  G    P GR  PGP G  G  G +      G    +G + V G    P  +G   + 
Sbjct: 937  AGSGGPIGPPGR--PGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 994

Query: 60   ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRP----DQSAAAAGPGDPKRKGGPG 110
              DG   E+     +  +  + E  PPGP  P     Q  AA   G+P  +G  G
Sbjct: 995  GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1049



 Score = 30.8 bits (68), Expect = 0.63
 Identities = 37/142 (26%), Positives = 47/142 (33%), Gaps = 9/142 (6%)

Query: 5    GRRAEPQGREAPG----PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGV 56
            G + EP    +PG    P   G  G R  +  SG   E G     G     G     G V
Sbjct: 1124 GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV 1183

Query: 57   NLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFV 116
                + G   E   R  +  +  R E+  PG           GP  P  K GP  +    
Sbjct: 1184 GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSE 1243

Query: 117  GKRRGGNKLALKTGIVAKKQKT 138
            G R+GG       G +    KT
Sbjct: 1244 G-RQGGKGAKGDPGAIGAPGKT 1264



 Score = 29.6 bits (65), Expect = 1.4
 Identities = 36/127 (28%), Positives = 41/127 (32%), Gaps = 24/127 (18%)

Query: 4    RGRRAEPQGREAPGPAG-------GGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGV 56
            +G + E      PGP G        G  G   A    G     GDE   G    P  G +
Sbjct: 1012 KGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP--GPI 1069

Query: 57   NLFANDGSFLELFKRKMEEEQRQRQEEP-PPGPQRPDQSAAAAGP----------GDPKR 105
             L    G   E    K E         P PPGP+ P     A GP          G P  
Sbjct: 1070 GLQGLPGPSGE----KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1125

Query: 106  KGGPGST 112
            KG PG +
Sbjct: 1126 KGEPGES 1132



 Score = 29.3 bits (64), Expect = 1.8
 Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 31/109 (28%)

Query: 3    ARGRRAEPQGREAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61
            A+G +  P      GP G  G  G R      G+  + G+  + GA S P+  G      
Sbjct: 1320 AKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA-SGPIGPG------ 1372

Query: 62   DGSFLELFKRKMEEEQRQRQEEPP--PGPQRPDQSAAAAGPGDPKRKGG 108
                                  PP  PGP  P  +  A GPG PK + G
Sbjct: 1373 ---------------------GPPGLPGPAGPKGAKGATGPGGPKGEKG 1400



 Score = 28.5 bits (62), Expect = 3.1
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 20/110 (18%)

Query: 4    RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63
            RG   EP    +PGP G  G      + G   SP S   +  G G+    G +      G
Sbjct: 1207 RGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-GGKGAKGDPGAIGAPGKTG 1265

Query: 64   SFLELFKRKMEEEQRQRQEEPPPGPQ-RPDQSAAAAGPGDPKRKGGPGST 112
                                 P GP  +P        PG   ++G PG+T
Sbjct: 1266 PV------------------GPAGPAGKPGPDGLRGLPGSVGQQGRPGAT 1297



 Score = 27.7 bits (60), Expect = 5.4
 Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 18/112 (16%)

Query: 5   GRRAEPQGREAPG-PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGVNLF 59
           GR+        PG P   G  G+R     SG   E G     G     G++  SG     
Sbjct: 719 GRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTS 778

Query: 60  ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPKRKGGPG 110
             DG      +R +            PGPQ P+      G PG P + G PG
Sbjct: 779 GGDGPHGPPGERGL------------PGPQGPNGFPGPKGPPGPPGKDGLPG 818


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 2    AARGRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLF 59
            A  G    P GR  PGP G  G  G +      G    +G + V G    P  +G   + 
Sbjct: 916  AGSGGPIGPPGR--PGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 973

Query: 60   ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRP----DQSAAAAGPGDPKRKGGPG 110
              DG   E+     +  +  + E  PPGP  P     Q  AA   G+P  +G  G
Sbjct: 974  GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1028



 Score = 30.8 bits (68), Expect = 0.63
 Identities = 37/142 (26%), Positives = 47/142 (33%), Gaps = 9/142 (6%)

Query: 5    GRRAEPQGREAPG----PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGV 56
            G + EP    +PG    P   G  G R  +  SG   E G     G     G     G V
Sbjct: 1103 GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV 1162

Query: 57   NLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFV 116
                + G   E   R  +  +  R E+  PG           GP  P  K GP  +    
Sbjct: 1163 GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSE 1222

Query: 117  GKRRGGNKLALKTGIVAKKQKT 138
            G R+GG       G +    KT
Sbjct: 1223 G-RQGGKGAKGDPGAIGAPGKT 1243



 Score = 29.6 bits (65), Expect = 1.4
 Identities = 36/127 (28%), Positives = 41/127 (32%), Gaps = 24/127 (18%)

Query: 4    RGRRAEPQGREAPGPAG-------GGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGV 56
            +G + E      PGP G        G  G   A    G     GDE   G    P  G +
Sbjct: 991  KGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP--GPI 1048

Query: 57   NLFANDGSFLELFKRKMEEEQRQRQEEP-PPGPQRPDQSAAAAGP----------GDPKR 105
             L    G   E    K E         P PPGP+ P     A GP          G P  
Sbjct: 1049 GLQGLPGPSGE----KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1104

Query: 106  KGGPGST 112
            KG PG +
Sbjct: 1105 KGEPGES 1111



 Score = 29.3 bits (64), Expect = 1.8
 Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 31/109 (28%)

Query: 3    ARGRRAEPQGREAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61
            A+G +  P      GP G  G  G R      G+  + G+  + GA S P+  G      
Sbjct: 1299 AKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA-SGPIGPG------ 1351

Query: 62   DGSFLELFKRKMEEEQRQRQEEPP--PGPQRPDQSAAAAGPGDPKRKGG 108
                                  PP  PGP  P  +  A GPG PK + G
Sbjct: 1352 ---------------------GPPGLPGPAGPKGAKGATGPGGPKGEKG 1379



 Score = 28.5 bits (62), Expect = 3.1
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 20/110 (18%)

Query: 4    RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63
            RG   EP    +PGP G  G      + G   SP S   +  G G+    G +      G
Sbjct: 1186 RGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-GGKGAKGDPGAIGAPGKTG 1244

Query: 64   SFLELFKRKMEEEQRQRQEEPPPGPQ-RPDQSAAAAGPGDPKRKGGPGST 112
                                 P GP  +P        PG   ++G PG+T
Sbjct: 1245 PV------------------GPAGPAGKPGPDGLRGLPGSVGQQGRPGAT 1276



 Score = 27.7 bits (60), Expect = 5.4
 Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 18/112 (16%)

Query: 5   GRRAEPQGREAPG-PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGVNLF 59
           GR+        PG P   G  G+R     SG   E G     G     G++  SG     
Sbjct: 698 GRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTS 757

Query: 60  ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPKRKGGPG 110
             DG      +R +            PGPQ P+      G PG P + G PG
Sbjct: 758 GGDGPHGPPGERGL------------PGPQGPNGFPGPKGPPGPPGKDGLPG 797


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 2    AARGRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLF 59
            A  G    P GR  PGP G  G  G +      G    +G + V G    P  +G   + 
Sbjct: 1023 AGSGGPIGPPGR--PGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 1080

Query: 60   ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRP----DQSAAAAGPGDPKRKGGPG 110
              DG   E+     +  +  + E  PPGP  P     Q  AA   G+P  +G  G
Sbjct: 1081 GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1135



 Score = 30.8 bits (68), Expect = 0.63
 Identities = 37/142 (26%), Positives = 47/142 (33%), Gaps = 9/142 (6%)

Query: 5    GRRAEPQGREAPG----PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGV 56
            G + EP    +PG    P   G  G R  +  SG   E G     G     G     G V
Sbjct: 1210 GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV 1269

Query: 57   NLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFV 116
                + G   E   R  +  +  R E+  PG           GP  P  K GP  +    
Sbjct: 1270 GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSE 1329

Query: 117  GKRRGGNKLALKTGIVAKKQKT 138
            G R+GG       G +    KT
Sbjct: 1330 G-RQGGKGAKGDPGAIGAPGKT 1350



 Score = 29.6 bits (65), Expect = 1.4
 Identities = 36/127 (28%), Positives = 41/127 (32%), Gaps = 24/127 (18%)

Query: 4    RGRRAEPQGREAPGPAG-------GGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGV 56
            +G + E      PGP G        G  G   A    G     GDE   G    P  G +
Sbjct: 1098 KGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP--GPI 1155

Query: 57   NLFANDGSFLELFKRKMEEEQRQRQEEP-PPGPQRPDQSAAAAGP----------GDPKR 105
             L    G   E    K E         P PPGP+ P     A GP          G P  
Sbjct: 1156 GLQGLPGPSGE----KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1211

Query: 106  KGGPGST 112
            KG PG +
Sbjct: 1212 KGEPGES 1218



 Score = 29.3 bits (64), Expect = 1.8
 Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 31/109 (28%)

Query: 3    ARGRRAEPQGREAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61
            A+G +  P      GP G  G  G R      G+  + G+  + GA S P+  G      
Sbjct: 1406 AKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA-SGPIGPG------ 1458

Query: 62   DGSFLELFKRKMEEEQRQRQEEPP--PGPQRPDQSAAAAGPGDPKRKGG 108
                                  PP  PGP  P  +  A GPG PK + G
Sbjct: 1459 ---------------------GPPGLPGPAGPKGAKGATGPGGPKGEKG 1486



 Score = 28.5 bits (62), Expect = 3.1
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 20/110 (18%)

Query: 4    RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63
            RG   EP    +PGP G  G      + G   SP S   +  G G+    G +      G
Sbjct: 1293 RGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-GGKGAKGDPGAIGAPGKTG 1351

Query: 64   SFLELFKRKMEEEQRQRQEEPPPGPQ-RPDQSAAAAGPGDPKRKGGPGST 112
                                 P GP  +P        PG   ++G PG+T
Sbjct: 1352 PV------------------GPAGPAGKPGPDGLRGLPGSVGQQGRPGAT 1383



 Score = 27.7 bits (60), Expect = 5.4
 Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 18/112 (16%)

Query: 5   GRRAEPQGREAPG-PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGVNLF 59
           GR+        PG P   G  G+R     SG   E G     G     G++  SG     
Sbjct: 805 GRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTS 864

Query: 60  ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPKRKGGPG 110
             DG      +R +            PGPQ P+      G PG P + G PG
Sbjct: 865 GGDGPHGPPGERGL------------PGPQGPNGFPGPKGPPGPPGKDGLPG 904


>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
          sapiens]
          Length = 190

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 6  RRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSF 65
          R+ + +G    G  GG G G      G GT+        SGAG SP              
Sbjct: 15 RQGDYRGATWLGRGGGAGPGQSGPGHGQGTATSWARTGESGAGPSPA------------- 61

Query: 66 LELFKRKMEEEQRQRQEE---PPPGPQRPDQSAAAA 98
             ++R   E  R RQ     PP  P+RPD    AA
Sbjct: 62 ---WRRCAGEASRGRQRARSGPPKSPRRPDAQLRAA 94


>gi|5803080 macrophage receptor with collagenous structure [Homo
           sapiens]
          Length = 520

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 3   ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAND 62
           A+G + +P  +  PGP G  G      E GS  SP  G   + G+  SP + G+     D
Sbjct: 296 AKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSP--GRAGLPGSPGSPGATGLKGSKGD 353

Query: 63  GSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110
                     ++ +Q ++ E   PGP        + G   P  KG PG
Sbjct: 354 TG--------LQGQQGRKGESGVPGPAGVKGEQGSPGLAGP--KGAPG 391



 Score = 26.9 bits (58), Expect = 9.2
 Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 16  PGPAGG----GGGGSRWAESGSGTSPESGDEEVSGA-------GSSPVSGGVNLFANDGS 64
           PGP G     G GG    +  +GT  E GD  + G+       G + V G      + G 
Sbjct: 222 PGPQGEKGSKGDGGLIGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGD 281

Query: 65  F-------LELFK-RKMEEEQRQRQEEP-PPGPQ-RPDQSAAAAGPGDPKRKGGPGS 111
           F       L  F   K ++ Q   Q  P PPG    P         G P R G PGS
Sbjct: 282 FGRPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGS 338


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 37/118 (31%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 8   AEPQGREAPGPAGGGGGGSRWAESGS-GTSPESGDEEVSGAGSSPVSGGVNLFANDGSFL 66
           ++P   + PGPA G G     + S    T P SG    SG G +P        A  G+  
Sbjct: 107 SKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPP 166

Query: 67  ELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRRGGNK 124
                        +   PPP P      AA  GPG P  K GPG      GK  GG K
Sbjct: 167 PTPPSSGVPTTPPQAGGPPPPP------AAVPGPG-PGPKQGPGPGGPKGGKMPGGPK 217



 Score = 28.9 bits (63), Expect = 2.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 77  QRQRQEEPPPGPQRPDQSAAAAGPG 101
           Q  +Q++PPP PQ   +   A GPG
Sbjct: 92  QPHQQQQPPPPPQDSSKPVVAQGPG 116


>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
          Length = 517

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 38/108 (35%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 9   EPQGREAPGPAGGGGGGSRWAESGSGTSPESGDE--EVSGAGSSPVSGGVNLFANDGSFL 66
           EP+G    G  GGGGGGS    S S      GDE     G GSS  SGG       GS L
Sbjct: 160 EPKGPR--GSQGGGGGGS----SSSSVVSSGGDEGYGTGGGGSSATSGG-----RRGS-L 207

Query: 67  ELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLS 114
           E+     E   R   E+          S  ++G   P    G GST S
Sbjct: 208 EM-SSDGEPLSRMDSEDSISSTIMDVDSTISSGRSTPAMMNGQGSTTS 254



 Score = 30.4 bits (67), Expect = 0.83
 Identities = 40/165 (24%), Positives = 58/165 (35%), Gaps = 35/165 (21%)

Query: 12  GREAPGPAGGGGGGSRWAESGSGTSPESG-----------------DEEVSGAGSSPVSG 54
           G    G  GGGG G   AE+ S  SPES                  DE  S  G    S 
Sbjct: 62  GSGGGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEESS 121

Query: 55  GVNLFANDGSFLELFKRKM----------EEEQRQRQEEP--PPGPQ-----RPDQSAAA 97
             +L  + G       R +          + + ++  EEP  P G Q         S+  
Sbjct: 122 AESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSVV 181

Query: 98  AGPGDPKRKGGPGSTLSFVGKRRGGNKLALKTGIVAKKQKTEDEV 142
           +  GD     G G + +  G RRG  +++   G    +  +ED +
Sbjct: 182 SSGGDEGYGTGGGGSSATSGGRRGSLEMS-SDGEPLSRMDSEDSI 225


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.307    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,968,957
Number of Sequences: 37866
Number of extensions: 647691
Number of successful extensions: 7992
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 528
Number of HSP's that attempted gapping in prelim test: 5157
Number of HSP's gapped (non-prelim): 2656
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press