BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|13128992 hypothetical protein MGC2803 [Homo sapiens] (176 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|13128992 hypothetical protein MGC2803 [Homo sapiens] 361 e-100 gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens] 42 3e-04 gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens] 40 0.001 gi|4504733 insulin receptor substrate 4 [Homo sapiens] 39 0.002 gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 39 0.002 gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 38 0.004 gi|239749709 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005 gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens] 38 0.005 gi|83977459 pleckstrin homology-like domain, family A, member 1 ... 38 0.005 gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 37 0.007 gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 37 0.007 gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 37 0.007 gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 37 0.007 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.009 gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 37 0.009 gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.012 gi|26051273 voltage-gated potassium channel, subfamily H, member... 37 0.012 gi|4557729 voltage-gated potassium channel, subfamily H, member ... 37 0.012 gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 37 0.012 gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 37 0.012 gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens] 36 0.015 gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo ... 36 0.015 gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo ... 36 0.015 gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 36 0.015 gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 36 0.015 gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 36 0.015 gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 36 0.020 gi|5803080 macrophage receptor with collagenous structure [Homo ... 36 0.020 gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 36 0.020 gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 36 0.020 >gi|13128992 hypothetical protein MGC2803 [Homo sapiens] Length = 176 Score = 361 bits (927), Expect = e-100 Identities = 176/176 (100%), Positives = 176/176 (100%) Query: 1 MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA 60 MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA Sbjct: 1 MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA 60 Query: 61 NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120 NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR Sbjct: 61 NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120 Query: 121 GGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 176 GGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK Sbjct: 121 GGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK 176 >gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens] Length = 465 Score = 42.0 bits (97), Expect = 3e-04 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 26/127 (20%) Query: 3 ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGD---------EEVSGAGSSPVS 53 A+ R P R P GG+ +G G +G +++GA P Sbjct: 238 AKRRTRVPPSRRGPDAVAAPPGGTERRPNGLGPERSAGPGGAEAEPLPTQLNGAPGEPAP 297 Query: 54 GGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG--------PGDPKR 105 G D L+L EE E PPGP+RP++ G PGD Sbjct: 298 AG----PRDTDALDL-----EESSSSDHAERPPGPRRPERGPRGKGKARASQVKPGDSLP 348 Query: 106 KGGPGST 112 + GPG+T Sbjct: 349 RRGPGAT 355 >gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens] Length = 601 Score = 39.7 bits (91), Expect = 0.001 Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 8/148 (5%) Query: 2 AARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNL--F 59 A + ++ +PGP G G S++AES S SG E + S G + Sbjct: 248 ARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGEL 307 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-----PGDPKRKGGPGSTLS 114 D S+ E+ K+K ++ ++++++ +R +S + G G+ GP ++ Sbjct: 308 VIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIP 367 Query: 115 FVGKRRGGNKL-ALKTGIVAKKQKTEDE 141 + G L L T ++K+K ++E Sbjct: 368 YAGAAAPPLPLPGLHTDGHSEKKKKKEE 395 >gi|4504733 insulin receptor substrate 4 [Homo sapiens] Length = 1257 Score = 38.9 bits (89), Expect = 0.002 Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 11/107 (10%) Query: 5 GRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGS 64 G + G+ G G GGG GSG GD SG G + GG + GS Sbjct: 542 GNQCSRDGQGTAGGHGSGGGQRPGGGHGSGGGQGPGDGHGSGGGKNS-GGGKGSGSGKGS 600 Query: 65 ------FLELFKR----KMEEEQRQRQEEPPPGPQRPDQSAAAAGPG 101 L KR K+ + ++Q+ PPP P P + G G Sbjct: 601 DGDGERGKSLKKRSYFGKLTQSKQQQMPPPPPPPPPPPPAGGTGGKG 647 Score = 33.9 bits (76), Expect = 0.075 Identities = 34/116 (29%), Positives = 37/116 (31%), Gaps = 24/116 (20%) Query: 12 GREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKR 71 GR + G G G GS SG G G GS+ G N + DG Sbjct: 498 GRGSGGGQGSNGQGSSSHSSGGNQCSGEGQGSRGGQGSNGQGSGGNQCSRDG-------- 549 Query: 72 KMEEEQRQRQEEPPPGPQRP---DQSAAAAGPGDPKRKGGPGSTLSFVGKRRGGNK 124 Q G QRP S GPGD GG GK GG K Sbjct: 550 -----QGTAGGHGSGGGQRPGGGHGSGGGQGPGDGHGSGG--------GKNSGGGK 592 >gi|114155142 nuclear pore complex-associated protein TPR [Homo sapiens] Length = 2363 Score = 38.9 bits (89), Expect = 0.002 Identities = 38/140 (27%), Positives = 53/140 (37%), Gaps = 12/140 (8%) Query: 14 EAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAG-------SSPVSGGVNLFANDGSF 65 E G A G G + AE G GT P + EE G G S SG N A + SF Sbjct: 1990 EGTGSADGNDGYEADDAEGGDGTDPGTETEESMGGGEGNHRAADSQNSGEGNTGAAESSF 2049 Query: 66 LELFKRKMEEEQRQRQEEP--PPGPQRPDQ--SAAAAGPGDPKRKGGPGSTLSFVGKRRG 121 + R+ + ++ P P P+RP P+ G P + ++ Sbjct: 2050 SQEVSREQQPSSASERQAPRAPQSPRRPPHPLPPRLTIHAPPQELGPPVQRIQMTRRQSV 2109 Query: 122 GNKLALKTGIVAKKQKTEDE 141 G L L GI +Q D+ Sbjct: 2110 GRGLQLTPGIGGMQQHFFDD 2129 >gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo sapiens] Length = 940 Score = 38.1 bits (87), Expect = 0.004 Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 4/109 (3%) Query: 12 GREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKR 71 G PGP GG GG G P GD G G P+ GG + G + R Sbjct: 648 GGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGD-PMRGGP-MRGGPGPGPGPYHR 705 Query: 72 KMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120 R E PPP P +G G P +GGPG + G R Sbjct: 706 G--RGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHR 752 Score = 31.6 bits (70), Expect = 0.37 Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 3 ARGRRA---EPQGREAPGPAGGGGGGSRWAES-GSGTSPESGDEEVSGAGSSPVSG 54 ARG R+ P GR PG GGGG R E G G SG G G SG Sbjct: 725 ARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSG 780 Score = 27.3 bits (59), Expect = 7.0 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 14 EAPGPA-GGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGG 55 E PG + GGGGG G G S SG G G +GG Sbjct: 785 EGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGG 827 >gi|239749709 PREDICTED: hypothetical protein [Homo sapiens] Length = 178 Score = 37.7 bits (86), Expect = 0.005 Identities = 38/132 (28%), Positives = 46/132 (34%), Gaps = 9/132 (6%) Query: 4 RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63 R RRAE G EA GG ++GS E G E G P + A G Sbjct: 42 RSRRAEGGGAEAAAARTAGGEPRAQRQAGSQADEEGGRPERVNHGQVPQGERLRAMAKGG 101 Query: 64 SFLELFKRKMEEEQRQRQEEPPPGPQRPDQS--AAAAGPGDPKRKGGPGSTLSFVGKRRG 121 + +RQ P R S AAG G +R+ G T S G R G Sbjct: 102 V-------GKGSQGAERQASRPHAEHRLGLSHLTRAAGAGAARRRAGAARTRSPKGCRAG 154 Query: 122 GNKLALKTGIVA 133 +L G A Sbjct: 155 AARLERAGGPAA 166 >gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens] Length = 496 Score = 37.7 bits (86), Expect = 0.005 Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Query: 17 GPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKRKMEEE 76 G +GGGGGG GS P E G G S V D + +R + Sbjct: 25 GGSGGGGGGDEDGSLGSRAEPAPRAREGGGCGRSEVRPVAPRRPRDA----VGQRGAQGA 80 Query: 77 QRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110 R+R+ PP P + A + D GGPG Sbjct: 81 GRRRRAGGPPRPMSEPGAGAGSSLLDVAEPGGPG 114 >gi|83977459 pleckstrin homology-like domain, family A, member 1 [Homo sapiens] Length = 401 Score = 37.7 bits (86), Expect = 0.005 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 30/117 (25%) Query: 22 GGGGSRWAE-------------SGSGTSPESGDEEVSG-----AGSSPVSGGVNLFANDG 63 GG GSRW E +G+G + SG +G +G + GV +DG Sbjct: 103 GGRGSRWGEDGARLLLLPPARAAGNGEAEPSGGPSYAGRMLESSGCKALKEGVLEKRSDG 162 Query: 64 SFLELFKRK-----------MEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGP 109 L+L+K+K + +Q Q Q++ Q+ Q GP +P + GP Sbjct: 163 -LLQLWKKKCCILTEEGLLLIPPKQLQHQQQQQQQQQQQQQQQPGQGPAEPSQPSGP 218 >gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] Length = 819 Score = 37.4 bits (85), Expect = 0.007 Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 35/181 (19%) Query: 2 AARGRRAEPQGREAPGPAGGGGGGSRWAESG---------------SGTSPESGDEEVSG 46 A G + +GR GP GG RW G +GT G ++ + Sbjct: 292 ATAGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAA 351 Query: 47 A------------GSSP------VSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGP 88 G P +G + D L KR+ + ++ R + P Sbjct: 352 VVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRA 411 Query: 89 QRPDQSAAAAGPGDPKRKGGPGSTLSFVGK-RRGGNKLALKTGIVAKKQKTEDEVLTSKG 147 Q+ + G R+ GP + S GK R GG K + G A +QK + S+G Sbjct: 412 QKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKA-RQKAAEAGAESRG 470 Query: 148 D 148 D Sbjct: 471 D 471 Score = 31.6 bits (70), Expect = 0.37 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 36/172 (20%) Query: 2 AARGRRAEPQGREAPGPAGGGGGGSRW---AESGSGTSPESGDEEVSGAGSSPVSGGVNL 58 AA G++A +G++ G G W A +G + G+++ + AG+ + G Sbjct: 65 AAGGKKARLRGQK--GAVAGKEARQHWQKAAGAGGAENRGGGEQKAAAAGTKSLGG---- 118 Query: 59 FANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGK 118 R R+ P+R Q AAA G P+ + + + Sbjct: 119 -------------------RGRK------PRRRGQKAAATGSKKPRWRAQKSAAAGSKNR 153 Query: 119 RRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKAHQCGDDDK 170 G K A G+ K Q E + A ++ + ++ A GD+DK Sbjct: 154 GAGAQKAAAAAGV--KSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDK 203 Score = 28.1 bits (61), Expect = 4.1 Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 17/124 (13%) Query: 1 MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA 60 + RGR+ +G++A A G RW S + GAG+ + + + Sbjct: 116 LGGRGRKPRRRGQKA---AATGSKKPRWRAQKSAAAGSKN----RGAGAQKAAAAAGVKS 168 Query: 61 NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120 G E+ Q+ + + A GD +KG S GK R Sbjct: 169 QGG----------EKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKTR 218 Query: 121 GGNK 124 GG + Sbjct: 219 GGRR 222 Score = 28.1 bits (61), Expect = 4.1 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 12 GREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGG 55 G++A GGGG++ G G SG++ V+ G + G Sbjct: 750 GKKAAASKSHGGGGAK-RRRGGGAKSRSGEKAVTAGGQKAAAAG 792 >gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] Length = 306 Score = 37.4 bits (85), Expect = 0.007 Identities = 26/93 (27%), Positives = 35/93 (37%) Query: 19 AGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKRKMEEEQR 78 A + A G G+ P V GAG G + G+ LE + + EE Sbjct: 3 AAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLL 62 Query: 79 QRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGS 111 + + EP P + P A PG G PGS Sbjct: 63 EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGS 95 Score = 32.7 bits (73), Expect = 0.17 Identities = 21/86 (24%), Positives = 27/86 (31%), Gaps = 3/86 (3%) Query: 6 RRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSF 65 R P G PGP G G E + GD + + V + Sbjct: 76 RPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEA-- 133 Query: 66 LELFKRKMEEEQRQRQEEPPPGPQRP 91 E K E ++Q PPPG P Sbjct: 134 -EKLKELQNEVEKQMNMSPPPGNAGP 158 Score = 32.0 bits (71), Expect = 0.28 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Query: 15 APGPAGGGGGG-SRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKRKM 73 A G AGG G G R G E+G+ GAG G L + + LE + + Sbjct: 10 AAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDY----GNGLESEE---LEPEELLL 62 Query: 74 EEEQRQRQEEPPPGPQRPDQSAA----AAGPGDPKRKGGPG 110 E E EE PP P+ P + + PG + + PG Sbjct: 63 EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPG 103 >gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo sapiens] Length = 1899 Score = 37.4 bits (85), Expect = 0.007 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 22/127 (17%) Query: 1 MAARGRRAEPQGREAPGPAGGGGGGSRWAESG----SGTSPESGDE-EVSGAG------- 48 M RG P +PG G G + + G SG E GD +++ Sbjct: 1686 MGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVAR 1745 Query: 49 ---SSPVSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPK 104 +SG +N F ++ + + Q R + PPGP P SA A G PG Sbjct: 1746 QVCEQLISGQMNRFN------QMLNQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGG 1799 Query: 105 RKGGPGS 111 R G PG+ Sbjct: 1800 RPGFPGT 1806 Score = 32.3 bits (72), Expect = 0.22 Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 16/107 (14%) Query: 16 PGPAGGGGG----GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKR 71 PGPAGG G G R G GD G P G N + G Sbjct: 1588 PGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPG-------- 1639 Query: 72 KMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGK 118 E+ RQ + P P ++ PG P G PG F GK Sbjct: 1640 ---EQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDR-GFTGK 1682 Score = 27.7 bits (60), Expect = 5.4 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 4 RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLFAND 62 RG P + PGP G G + G ++G+ + G +P + G Sbjct: 1615 RGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPP 1674 Query: 63 GSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110 G F K + PP P P + + PG P G PG Sbjct: 1675 GD--RGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPG 1720 >gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo sapiens] Length = 3063 Score = 37.4 bits (85), Expect = 0.007 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 22/127 (17%) Query: 1 MAARGRRAEPQGREAPGPAGGGGGGSRWAESG----SGTSPESGDE-EVSGAG------- 48 M RG P +PG G G + + G SG E GD +++ Sbjct: 2850 MGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVAR 2909 Query: 49 ---SSPVSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPK 104 +SG +N F ++ + + Q R + PPGP P SA A G PG Sbjct: 2910 QVCEQLISGQMNRFN------QMLNQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGG 2963 Query: 105 RKGGPGS 111 R G PG+ Sbjct: 2964 RPGFPGT 2970 Score = 32.3 bits (72), Expect = 0.22 Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 16/107 (14%) Query: 16 PGPAGGGGG----GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKR 71 PGPAGG G G R G GD G P G N + G Sbjct: 2752 PGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPG-------- 2803 Query: 72 KMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGK 118 E+ RQ + P P ++ PG P G PG F GK Sbjct: 2804 ---EQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDR-GFTGK 2846 Score = 28.9 bits (63), Expect = 2.4 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 117 GKRRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKA--HQCGDDDKTRPL 174 GK R G+ + KT D ++S W EVK YK H GDD + L Sbjct: 1074 GKLRQGSGTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGEL 1133 Query: 175 V 175 V Sbjct: 1134 V 1134 Score = 27.7 bits (60), Expect = 5.4 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 4 RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLFAND 62 RG P + PGP G G + G ++G+ + G +P + G Sbjct: 2779 RGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPP 2838 Query: 63 GSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110 G F K + PP P P + + PG P G PG Sbjct: 2839 GD--RGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPG 2884 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 37.0 bits (84), Expect = 0.009 Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 12/122 (9%) Query: 5 GRRAEPQGREAPGPAGGGG-------GGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVN 57 G+ P R PGP G G G + SG GD +G P S G N Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 295 Query: 58 LFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVG 117 G+ ++ R + E+ + P G + D + AAGP P GP VG Sbjct: 296 -----GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG 350 Query: 118 KR 119 + Sbjct: 351 AK 352 Score = 37.0 bits (84), Expect = 0.009 Identities = 37/113 (32%), Positives = 43/113 (38%), Gaps = 19/113 (16%) Query: 1 MAARGRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLF 59 M RG E APGPAG G G+ A G + +G GA + G Sbjct: 301 MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQ-- 358 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGP-GDPKRKGGPGS 111 R E Q R E PPGP A AAGP G+P G PG+ Sbjct: 359 ---------GPRGSEGPQGVRGEPGPPGP------AGAAGPAGNPGADGQPGA 396 Score = 33.9 bits (76), Expect = 0.075 Identities = 33/122 (27%), Positives = 38/122 (31%), Gaps = 14/122 (11%) Query: 5 GRRAEPQGREAPGPAGGGG-GGSRWAESGSGTSPESGDEEVSGAGSSP----VSGGVNLF 59 G R P R PGP G G G A+ G E GD G P +G Sbjct: 794 GARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKR 119 N G+ + R PPG +A GP P GP GK Sbjct: 854 GNVGA---------PGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE 904 Query: 120 RG 121 G Sbjct: 905 GG 906 Score = 33.1 bits (74), Expect = 0.13 Identities = 36/134 (26%), Positives = 42/134 (31%), Gaps = 27/134 (20%) Query: 4 RGRRAEPQGREAPGPAG-GGGGGSRWAESGSGTS----------------PESGDEEVSG 46 RG R EP PGP G GG GSR G + P+ E Sbjct: 469 RGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR 528 Query: 47 AGSSPVSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQR----------PDQSAA 96 G + + G L + GS K Q PPGP P A Sbjct: 529 PGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGA 588 Query: 97 AAGPGDPKRKGGPG 110 A PG +G PG Sbjct: 589 AGEPGKAGERGVPG 602 Score = 32.0 bits (71), Expect = 0.28 Identities = 30/109 (27%), Positives = 36/109 (33%), Gaps = 35/109 (32%) Query: 10 PQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELF 69 P R GP G GG SG +P G + +GA P GV Sbjct: 412 PGARGPSGPQGPGGPPGPKGNSGEPGAP--GSKGDTGAKGEPGPVGV------------- 456 Query: 70 KRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-------PGDPKRKGGPGS 111 + PPGP + A G PG P +GGPGS Sbjct: 457 -------------QGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492 Score = 31.6 bits (70), Expect = 0.37 Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 31/125 (24%) Query: 16 PGPAGGGGGGSRWAESG-------------SGTSPESGDEEVSGAGSSPVSGGVNLFAND 62 PGPAG GG E+G G + E G G +P + G A Sbjct: 898 PGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ 957 Query: 63 GSFLELFKRKME-----------EEQRQ-----RQEEPPPGPQRPDQSAAAAGPGDPKRK 106 + L ++ E E +Q E PPGP P A PG+ R+ Sbjct: 958 RGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP--PGLAGPPGESGRE 1015 Query: 107 GGPGS 111 G PG+ Sbjct: 1016 GAPGA 1020 Score = 31.2 bits (69), Expect = 0.49 Identities = 31/121 (25%), Positives = 40/121 (33%), Gaps = 21/121 (17%) Query: 5 GRRAEPQGREAPGPAGGGGGGSRWAESGSG-----TSPESGDEEVSGAGSSPVSGGVNLF 59 G+ E + PGPAG G +GS P E G V G + Sbjct: 611 GKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP 670 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG----------PGDPKRKGGP 109 G+ R +R + PPGP P + A G PG P +G P Sbjct: 671 GPSGA------RGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP 724 Query: 110 G 110 G Sbjct: 725 G 725 Score = 30.8 bits (68), Expect = 0.63 Identities = 31/110 (28%), Positives = 37/110 (33%), Gaps = 11/110 (10%) Query: 5 GRRAEPQGREAPGPAGGGG----GGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFA 60 G + + APG G G G R A G + GD GA SP GV Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR--- 763 Query: 61 NDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110 G + + E P GP P + A PGD G PG Sbjct: 764 --GLTGPIGPPGPAGAPGDKGESGPSGPAGP--TGARGAPGDRGEPGPPG 809 Score = 28.5 bits (62), Expect = 3.1 Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 11/113 (9%) Query: 5 GRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGS 64 G P APGP G G E+G P V G+ +G + G Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETG----PAGPAGPVGPVGARGPAGPQGPRGDKGE 1098 Query: 65 FLELFKRKMEEEQRQRQEEPPPGP------QRPDQSAAAAGPGDPK-RKGGPG 110 E R ++ + + PPGP Q P ++ AGP P G PG Sbjct: 1099 TGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPG 1151 Score = 28.1 bits (61), Expect = 4.1 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Query: 3 ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGV 56 ARG R P R GP G G R A G GD GA S + G+ Sbjct: 675 ARGERGFPGERGVQGPP--GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGL 726 Score = 28.1 bits (61), Expect = 4.1 Identities = 34/125 (27%), Positives = 39/125 (31%), Gaps = 30/125 (24%) Query: 3 ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSP-------------ESGDEEVSGAGS 49 A G R P PG AG G R G+ SP E+G GA Sbjct: 990 ASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPG 1049 Query: 50 SP-VSGGVNLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPK-RKG 107 +P G V G R E P GP P A GP P+ +G Sbjct: 1050 APGAPGPVGPAGKSG---------------DRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094 Query: 108 GPGST 112 G T Sbjct: 1095 DKGET 1099 >gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] Length = 753 Score = 37.0 bits (84), Expect = 0.009 Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 16/104 (15%) Query: 18 PAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFKRKMEEEQ 77 P+GGGGGGS G G+S S GAG + + D Sbjct: 395 PSGGGGGGS----GGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNA 450 Query: 78 RQRQEEPPPGPQRPDQS------------AAAAGPGDPKRKGGP 109 + PP GP P S A PG GGP Sbjct: 451 SSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGP 494 >gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] Length = 1838 Score = 36.6 bits (83), Expect = 0.012 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 7 RAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLFANDGSF 65 R PQG PGPAG G A G +G + + G P +G V DG Sbjct: 1106 RPGPQG--PPGPAGEKG-----APGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDK 1158 Query: 66 LELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKR 119 E+ + + + + E+ PPGP P GP + GP G++ Sbjct: 1159 GEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQK 1212 Score = 30.8 bits (68), Expect = 0.63 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 18/120 (15%) Query: 4 RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSP----------ESGDEEVSGAGSSPVS 53 +G + + + PGP G G + SG+ P + GDE G P Sbjct: 1167 KGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPP-- 1224 Query: 54 GGVNLFANDGSFLELFKRKMEEEQRQRQEEP-PPGPQRPDQSAAAAGP-GDPKRKGGPGS 111 G V L G E K E + P PPGP+ P + A GP G P G PG+ Sbjct: 1225 GPVGLQGLPGPPGE----KGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGA 1280 Score = 29.3 bits (64), Expect = 1.8 Identities = 30/106 (28%), Positives = 35/106 (33%), Gaps = 24/106 (22%) Query: 5 GRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63 G E G+ PGP G G G R + G G + G P G D Sbjct: 769 GPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGD- 827 Query: 64 SFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGP 109 R E PPGP+ D GP PK +GGP Sbjct: 828 ----------------RGEIGPPGPRGED------GPEGPKGRGGP 851 Score = 28.9 bits (63), Expect = 2.4 Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 11/110 (10%) Query: 5 GRRAEPQGREAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63 G P R PGPAG G G + A+ +G G G +P G DG Sbjct: 1384 GPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGP-----DG 1438 Query: 64 SFLELFKRKMEEEQRQRQEEP--PPGPQRPDQSAAAAGPGDPK-RKGGPG 110 L + E+ P PPGP P G PK KG PG Sbjct: 1439 --LRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPG 1486 Score = 27.7 bits (60), Expect = 5.4 Identities = 32/110 (29%), Positives = 37/110 (33%), Gaps = 9/110 (8%) Query: 4 RGRRAEPQGREAPGPAGGGGGGSRWAESG-SGTSPESGDEEVSGAGSSPVSGGVNLFAND 62 RGR R PG G G +G G GD SG P G +D Sbjct: 609 RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGER--GDD 666 Query: 63 GSFLELFKRKMEEEQRQRQ---EEPPPGPQRPDQSAAAAGPGDPKRKGGP 109 G E+ R + E R + PPGP P G PK GP Sbjct: 667 G---EVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGP 713 Score = 27.3 bits (59), Expect = 7.0 Identities = 32/110 (29%), Positives = 37/110 (33%), Gaps = 15/110 (13%) Query: 3 ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAND 62 A G + EP PG G GG E G E G+ SGA P G +D Sbjct: 1280 AVGEKGEPGEAGEPGLPGEGGPPGPKGERG-----EKGESGPSGAAGPPGPKGPP--GDD 1332 Query: 63 GSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGST 112 G K +P P P P + PGD G PG T Sbjct: 1333 GP-------KGSPGPVGFPGDPGP-PGEPGPAGQDGPPGDKGDDGEPGQT 1374 >gi|26051273 voltage-gated potassium channel, subfamily H, member 2 isoform c [Homo sapiens] Length = 819 Score = 36.6 bits (83), Expect = 0.012 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 12 GREAPGPAGGGGGGSRWAESGSG--TSPESGDEEVSGAGSSPV 52 GR GP+ G G W ES S +SPES ++E G SSP+ Sbjct: 571 GRAGAGPSSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPL 613 >gi|4557729 voltage-gated potassium channel, subfamily H, member 2 isoform a [Homo sapiens] Length = 1159 Score = 36.6 bits (83), Expect = 0.012 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 12 GREAPGPAGGGGGGSRWAESGSG--TSPESGDEEVSGAGSSPV 52 GR GP+ G G W ES S +SPES ++E G SSP+ Sbjct: 911 GRAGAGPSSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPL 953 >gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 isoform d [Homo sapiens] Length = 756 Score = 36.6 bits (83), Expect = 0.012 Identities = 37/120 (30%), Positives = 45/120 (37%), Gaps = 11/120 (9%) Query: 4 RGRRAEPQGREAPGPAGGGGGG--SRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61 RG Q E GP GG GG +R SG G + G G G S G N N Sbjct: 520 RGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWGNNNRDN 579 Query: 62 DGSFLELFKRKMEEEQRQRQEEPPP------GPQRPDQSAAAAGPGDP---KRKGGPGST 112 + S + ++Q Q+ PPP P P S A PG K PGS+ Sbjct: 580 NNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSS 639 >gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 isoform a [Homo sapiens] Length = 856 Score = 36.6 bits (83), Expect = 0.012 Identities = 37/120 (30%), Positives = 45/120 (37%), Gaps = 11/120 (9%) Query: 4 RGRRAEPQGREAPGPAGGGGGG--SRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61 RG Q E GP GG GG +R SG G + G G G S G N N Sbjct: 620 RGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWGNNNRDN 679 Query: 62 DGSFLELFKRKMEEEQRQRQEEPPP------GPQRPDQSAAAAGPGDP---KRKGGPGST 112 + S + ++Q Q+ PPP P P S A PG K PGS+ Sbjct: 680 NNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSS 739 >gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens] Length = 410 Score = 36.2 bits (82), Expect = 0.015 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 12/108 (11%) Query: 9 EPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLEL 68 +P EA GG G RW GSG + +G A +PV G + Sbjct: 28 QPLLSEAGSGQGGAGLHPRWVWGGSGGAVGTGRRGGGAARPAPVRRGSPSSPGE------ 81 Query: 69 FKRKMEEEQRQRQEEP-----PPGPQRPDQSAAAAGPGDPKRKGGPGS 111 + EE+ R P P P+ P + PG P G PGS Sbjct: 82 -PYRPEEDSRMTPASPEARTSPVHPKFPKIPETSVAPGSPATAGPPGS 128 >gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo sapiens] Length = 410 Score = 36.2 bits (82), Expect = 0.015 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 12/108 (11%) Query: 9 EPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLEL 68 +P EA GG G RW GSG + +G A +PV G + Sbjct: 28 QPLLSEAGSGQGGAGLHPRWVWGGSGGAVGTGRRGGGAARPAPVRRGSPSSPGE------ 81 Query: 69 FKRKMEEEQRQRQEEP-----PPGPQRPDQSAAAAGPGDPKRKGGPGS 111 + EE+ R P P P+ P + PG P G PGS Sbjct: 82 -PYRPEEDSRMTPASPEARTSPVHPKFPKIPETSVAPGSPATAGPPGS 128 >gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo sapiens] Length = 410 Score = 36.2 bits (82), Expect = 0.015 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 12/108 (11%) Query: 9 EPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLEL 68 +P EA GG G RW GSG + +G A +PV G + Sbjct: 28 QPLLSEAGSGQGGAGLHPRWVWGGSGGAVGTGRRGGGAARPAPVRRGSPSSPGE------ 81 Query: 69 FKRKMEEEQRQRQEEP-----PPGPQRPDQSAAAAGPGDPKRKGGPGS 111 + EE+ R P P P+ P + PG P G PGS Sbjct: 82 -PYRPEEDSRMTPASPEARTSPVHPKFPKIPETSVAPGSPATAGPPGS 128 >gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo sapiens] Length = 1650 Score = 36.2 bits (82), Expect = 0.015 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 2 AARGRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLF 59 A G P GR PGP G G G + G +G + V G P +G + Sbjct: 937 AGSGGPIGPPGR--PGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 994 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRP----DQSAAAAGPGDPKRKGGPG 110 DG E+ + + + E PPGP P Q AA G+P +G G Sbjct: 995 GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1049 Score = 30.8 bits (68), Expect = 0.63 Identities = 37/142 (26%), Positives = 47/142 (33%), Gaps = 9/142 (6%) Query: 5 GRRAEPQGREAPG----PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGV 56 G + EP +PG P G G R + SG E G G G G V Sbjct: 1124 GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV 1183 Query: 57 NLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFV 116 + G E R + + R E+ PG GP P K GP + Sbjct: 1184 GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSE 1243 Query: 117 GKRRGGNKLALKTGIVAKKQKT 138 G R+GG G + KT Sbjct: 1244 G-RQGGKGAKGDPGAIGAPGKT 1264 Score = 29.6 bits (65), Expect = 1.4 Identities = 36/127 (28%), Positives = 41/127 (32%), Gaps = 24/127 (18%) Query: 4 RGRRAEPQGREAPGPAG-------GGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGV 56 +G + E PGP G G G A G GDE G P G + Sbjct: 1012 KGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP--GPI 1069 Query: 57 NLFANDGSFLELFKRKMEEEQRQRQEEP-PPGPQRPDQSAAAAGP----------GDPKR 105 L G E K E P PPGP+ P A GP G P Sbjct: 1070 GLQGLPGPSGE----KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1125 Query: 106 KGGPGST 112 KG PG + Sbjct: 1126 KGEPGES 1132 Score = 29.3 bits (64), Expect = 1.8 Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 31/109 (28%) Query: 3 ARGRRAEPQGREAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61 A+G + P GP G G G R G+ + G+ + GA S P+ G Sbjct: 1320 AKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA-SGPIGPG------ 1372 Query: 62 DGSFLELFKRKMEEEQRQRQEEPP--PGPQRPDQSAAAAGPGDPKRKGG 108 PP PGP P + A GPG PK + G Sbjct: 1373 ---------------------GPPGLPGPAGPKGAKGATGPGGPKGEKG 1400 Score = 28.5 bits (62), Expect = 3.1 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 20/110 (18%) Query: 4 RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63 RG EP +PGP G G + G SP S + G G+ G + G Sbjct: 1207 RGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-GGKGAKGDPGAIGAPGKTG 1265 Query: 64 SFLELFKRKMEEEQRQRQEEPPPGPQ-RPDQSAAAAGPGDPKRKGGPGST 112 P GP +P PG ++G PG+T Sbjct: 1266 PV------------------GPAGPAGKPGPDGLRGLPGSVGQQGRPGAT 1297 Score = 27.7 bits (60), Expect = 5.4 Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 18/112 (16%) Query: 5 GRRAEPQGREAPG-PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGVNLF 59 GR+ PG P G G+R SG E G G G++ SG Sbjct: 719 GRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTS 778 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPKRKGGPG 110 DG +R + PGPQ P+ G PG P + G PG Sbjct: 779 GGDGPHGPPGERGL------------PGPQGPNGFPGPKGPPGPPGKDGLPG 818 >gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo sapiens] Length = 1629 Score = 36.2 bits (82), Expect = 0.015 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 2 AARGRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLF 59 A G P GR PGP G G G + G +G + V G P +G + Sbjct: 916 AGSGGPIGPPGR--PGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 973 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRP----DQSAAAAGPGDPKRKGGPG 110 DG E+ + + + E PPGP P Q AA G+P +G G Sbjct: 974 GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1028 Score = 30.8 bits (68), Expect = 0.63 Identities = 37/142 (26%), Positives = 47/142 (33%), Gaps = 9/142 (6%) Query: 5 GRRAEPQGREAPG----PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGV 56 G + EP +PG P G G R + SG E G G G G V Sbjct: 1103 GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV 1162 Query: 57 NLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFV 116 + G E R + + R E+ PG GP P K GP + Sbjct: 1163 GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSE 1222 Query: 117 GKRRGGNKLALKTGIVAKKQKT 138 G R+GG G + KT Sbjct: 1223 G-RQGGKGAKGDPGAIGAPGKT 1243 Score = 29.6 bits (65), Expect = 1.4 Identities = 36/127 (28%), Positives = 41/127 (32%), Gaps = 24/127 (18%) Query: 4 RGRRAEPQGREAPGPAG-------GGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGV 56 +G + E PGP G G G A G GDE G P G + Sbjct: 991 KGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP--GPI 1048 Query: 57 NLFANDGSFLELFKRKMEEEQRQRQEEP-PPGPQRPDQSAAAAGP----------GDPKR 105 L G E K E P PPGP+ P A GP G P Sbjct: 1049 GLQGLPGPSGE----KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1104 Query: 106 KGGPGST 112 KG PG + Sbjct: 1105 KGEPGES 1111 Score = 29.3 bits (64), Expect = 1.8 Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 31/109 (28%) Query: 3 ARGRRAEPQGREAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61 A+G + P GP G G G R G+ + G+ + GA S P+ G Sbjct: 1299 AKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA-SGPIGPG------ 1351 Query: 62 DGSFLELFKRKMEEEQRQRQEEPP--PGPQRPDQSAAAAGPGDPKRKGG 108 PP PGP P + A GPG PK + G Sbjct: 1352 ---------------------GPPGLPGPAGPKGAKGATGPGGPKGEKG 1379 Score = 28.5 bits (62), Expect = 3.1 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 20/110 (18%) Query: 4 RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63 RG EP +PGP G G + G SP S + G G+ G + G Sbjct: 1186 RGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-GGKGAKGDPGAIGAPGKTG 1244 Query: 64 SFLELFKRKMEEEQRQRQEEPPPGPQ-RPDQSAAAAGPGDPKRKGGPGST 112 P GP +P PG ++G PG+T Sbjct: 1245 PV------------------GPAGPAGKPGPDGLRGLPGSVGQQGRPGAT 1276 Score = 27.7 bits (60), Expect = 5.4 Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 18/112 (16%) Query: 5 GRRAEPQGREAPG-PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGVNLF 59 GR+ PG P G G+R SG E G G G++ SG Sbjct: 698 GRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTS 757 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPKRKGGPG 110 DG +R + PGPQ P+ G PG P + G PG Sbjct: 758 GGDGPHGPPGERGL------------PGPQGPNGFPGPKGPPGPPGKDGLPG 797 >gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo sapiens] Length = 1736 Score = 36.2 bits (82), Expect = 0.015 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 2 AARGRRAEPQGREAPGPAGG-GGGGSRWAESGSGTSPESGDEEVSGAGSSP-VSGGVNLF 59 A G P GR PGP G G G + G +G + V G P +G + Sbjct: 1023 AGSGGPIGPPGR--PGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 1080 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRP----DQSAAAAGPGDPKRKGGPG 110 DG E+ + + + E PPGP P Q AA G+P +G G Sbjct: 1081 GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1135 Score = 30.8 bits (68), Expect = 0.63 Identities = 37/142 (26%), Positives = 47/142 (33%), Gaps = 9/142 (6%) Query: 5 GRRAEPQGREAPG----PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGV 56 G + EP +PG P G G R + SG E G G G G V Sbjct: 1210 GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV 1269 Query: 57 NLFANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFV 116 + G E R + + R E+ PG GP P K GP + Sbjct: 1270 GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSE 1329 Query: 117 GKRRGGNKLALKTGIVAKKQKT 138 G R+GG G + KT Sbjct: 1330 G-RQGGKGAKGDPGAIGAPGKT 1350 Score = 29.6 bits (65), Expect = 1.4 Identities = 36/127 (28%), Positives = 41/127 (32%), Gaps = 24/127 (18%) Query: 4 RGRRAEPQGREAPGPAG-------GGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGV 56 +G + E PGP G G G A G GDE G P G + Sbjct: 1098 KGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP--GPI 1155 Query: 57 NLFANDGSFLELFKRKMEEEQRQRQEEP-PPGPQRPDQSAAAAGP----------GDPKR 105 L G E K E P PPGP+ P A GP G P Sbjct: 1156 GLQGLPGPSGE----KGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1211 Query: 106 KGGPGST 112 KG PG + Sbjct: 1212 KGEPGES 1218 Score = 29.3 bits (64), Expect = 1.8 Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 31/109 (28%) Query: 3 ARGRRAEPQGREAPGPAGGGGG-GSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAN 61 A+G + P GP G G G R G+ + G+ + GA S P+ G Sbjct: 1406 AKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGA-SGPIGPG------ 1458 Query: 62 DGSFLELFKRKMEEEQRQRQEEPP--PGPQRPDQSAAAAGPGDPKRKGG 108 PP PGP P + A GPG PK + G Sbjct: 1459 ---------------------GPPGLPGPAGPKGAKGATGPGGPKGEKG 1486 Score = 28.5 bits (62), Expect = 3.1 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 20/110 (18%) Query: 4 RGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDG 63 RG EP +PGP G G + G SP S + G G+ G + G Sbjct: 1293 RGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-GGKGAKGDPGAIGAPGKTG 1351 Query: 64 SFLELFKRKMEEEQRQRQEEPPPGPQ-RPDQSAAAAGPGDPKRKGGPGST 112 P GP +P PG ++G PG+T Sbjct: 1352 PV------------------GPAGPAGKPGPDGLRGLPGSVGQQGRPGAT 1383 Score = 27.7 bits (60), Expect = 5.4 Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 18/112 (16%) Query: 5 GRRAEPQGREAPG-PAGGGGGGSRWAESGSGTSPESGDEEVSGA----GSSPVSGGVNLF 59 GR+ PG P G G+R SG E G G G++ SG Sbjct: 805 GRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTS 864 Query: 60 ANDGSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAG-PGDPKRKGGPG 110 DG +R + PGPQ P+ G PG P + G PG Sbjct: 865 GGDGPHGPPGERGL------------PGPQGPNGFPGPKGPPGPPGKDGLPG 904 >gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo sapiens] Length = 190 Score = 35.8 bits (81), Expect = 0.020 Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 19/96 (19%) Query: 6 RRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSF 65 R+ + +G G GG G G G GT+ SGAG SP Sbjct: 15 RQGDYRGATWLGRGGGAGPGQSGPGHGQGTATSWARTGESGAGPSPA------------- 61 Query: 66 LELFKRKMEEEQRQRQEE---PPPGPQRPDQSAAAA 98 ++R E R RQ PP P+RPD AA Sbjct: 62 ---WRRCAGEASRGRQRARSGPPKSPRRPDAQLRAA 94 >gi|5803080 macrophage receptor with collagenous structure [Homo sapiens] Length = 520 Score = 35.8 bits (81), Expect = 0.020 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 12/108 (11%) Query: 3 ARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFAND 62 A+G + +P + PGP G G E GS SP G + G+ SP + G+ D Sbjct: 296 AKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSP--GRAGLPGSPGSPGATGLKGSKGD 353 Query: 63 GSFLELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPG 110 ++ +Q ++ E PGP + G P KG PG Sbjct: 354 TG--------LQGQQGRKGESGVPGPAGVKGEQGSPGLAGP--KGAPG 391 Score = 26.9 bits (58), Expect = 9.2 Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 16 PGPAGG----GGGGSRWAESGSGTSPESGDEEVSGA-------GSSPVSGGVNLFANDGS 64 PGP G G GG + +GT E GD + G+ G + V G + G Sbjct: 222 PGPQGEKGSKGDGGLIGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGD 281 Query: 65 F-------LELFK-RKMEEEQRQRQEEP-PPGPQ-RPDQSAAAAGPGDPKRKGGPGS 111 F L F K ++ Q Q P PPG P G P R G PGS Sbjct: 282 FGRPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGS 338 >gi|4826998 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Homo sapiens] Length = 707 Score = 35.8 bits (81), Expect = 0.020 Identities = 37/118 (31%), Positives = 44/118 (37%), Gaps = 8/118 (6%) Query: 8 AEPQGREAPGPAGGGGGGSRWAESGS-GTSPESGDEEVSGAGSSPVSGGVNLFANDGSFL 66 ++P + PGPA G G + S T P SG SG G +P A G+ Sbjct: 107 SKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPP 166 Query: 67 ELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRRGGNK 124 + PPP P AA GPG P K GPG GK GG K Sbjct: 167 PTPPSSGVPTTPPQAGGPPPPP------AAVPGPG-PGPKQGPGPGGPKGGKMPGGPK 217 Score = 28.9 bits (63), Expect = 2.4 Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 77 QRQRQEEPPPGPQRPDQSAAAAGPG 101 Q +Q++PPP PQ + A GPG Sbjct: 92 QPHQQQQPPPPPQDSSKPVVAQGPG 116 >gi|166795264 AE binding protein 2 isoform b [Homo sapiens] Length = 517 Score = 35.8 bits (81), Expect = 0.020 Identities = 38/108 (35%), Positives = 43/108 (39%), Gaps = 15/108 (13%) Query: 9 EPQGREAPGPAGGGGGGSRWAESGSGTSPESGDE--EVSGAGSSPVSGGVNLFANDGSFL 66 EP+G G GGGGGGS S S GDE G GSS SGG GS L Sbjct: 160 EPKGPR--GSQGGGGGGS----SSSSVVSSGGDEGYGTGGGGSSATSGG-----RRGS-L 207 Query: 67 ELFKRKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLS 114 E+ E R E+ S ++G P G GST S Sbjct: 208 EM-SSDGEPLSRMDSEDSISSTIMDVDSTISSGRSTPAMMNGQGSTTS 254 Score = 30.4 bits (67), Expect = 0.83 Identities = 40/165 (24%), Positives = 58/165 (35%), Gaps = 35/165 (21%) Query: 12 GREAPGPAGGGGGGSRWAESGSGTSPESG-----------------DEEVSGAGSSPVSG 54 G G GGGG G AE+ S SPES DE S G S Sbjct: 62 GSGGGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEESS 121 Query: 55 GVNLFANDGSFLELFKRKM----------EEEQRQRQEEP--PPGPQ-----RPDQSAAA 97 +L + G R + + + ++ EEP P G Q S+ Sbjct: 122 AESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSVV 181 Query: 98 AGPGDPKRKGGPGSTLSFVGKRRGGNKLALKTGIVAKKQKTEDEV 142 + GD G G + + G RRG +++ G + +ED + Sbjct: 182 SSGGDEGYGTGGGGSSATSGGRRGSLEMS-SDGEPLSRMDSEDSI 225 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.307 0.130 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,968,957 Number of Sequences: 37866 Number of extensions: 647691 Number of successful extensions: 7992 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 309 Number of HSP's successfully gapped in prelim test: 528 Number of HSP's that attempted gapping in prelim test: 5157 Number of HSP's gapped (non-prelim): 2656 length of query: 176 length of database: 18,247,518 effective HSP length: 95 effective length of query: 81 effective length of database: 14,650,248 effective search space: 1186670088 effective search space used: 1186670088 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.