Guide to the Human Genome
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Name: LOC100288960 Sequence: fasta or formatted (410aa) NCBI GI: 239742016
Description:

PREDICTED: hypothetical protein XP_002342392

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         28           2
 C cysteine            3.2         13           2
 D aspartate           3.2         13           1
 E glutamate           5.1         21           2
 F phenylalanine       2.2          9           1
 G glycine            13.2         54           3
 H histidine           2.7         11           2
 I isoleucine          4.1         17           2
 K lysine              3.9         16           2
 L leucine             8.0         33           2
 M methionine          1.7          7           1
 N asparagine          2.4         10           1
 P proline             6.8         28           2
 Q glutamine           3.9         16           1
 R arginine            6.1         25           2
 S serine             10.0         41           3
 T threonine           4.9         20           1
 V valine              6.1         25           1
 W tryptophan          3.9         16           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342392 
LOC100293486          1.000   PREDICTED: similar to hCG2041452 
LOC100291379          1.000   PREDICTED: hypothetical protein XP_002346556 
LOC729756             0.227   PREDICTED: similar to hCG2041108 
LOC729756             0.227   PREDICTED: similar to hCG2041108 
LOC729756             0.227   PREDICTED: similar to hCG2041108 
TESSP2                0.210   testis serine protease 2 
PRSS21                0.197   testisin isoform 2 
PRSS21                0.196   testisin isoform 1 
TESSP1                0.187   testis-specific serine protease 1 
KLKB1                 0.186   plasma kallikrein B1 precursor 
PRSS36                0.186   protease, serine, 36 
TMPRSS13              0.184   transmembrane protease, serine 13 
PRSS27                0.181   marapsin 
MPN2                  0.177   marapsin 2 
ESSPL                 0.176   epidermis-specific serine protease-like protein [Ho...
TMPRSS6               0.174   transmembrane protease, serine 6 
PRSS21                0.173   testisin isoform 3 
PRSS22                0.173   protease, serine, 22 
TPSG1                 0.173   transmembrane tryptase preproprotein 
TPSB2                 0.173   tryptase beta 2 precursor 
TPSAB1                0.173   tryptase alpha/beta 1 precursor 
PRSS8                 0.168   prostasin preproprotein 
F11                   0.167   coagulation factor XI precursor 
TMPRSS12              0.165   transmembrane protease, serine 12 
PRSS33                0.160   protease, serine, 33 
TMPRSS2               0.159   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.159   transmembrane protease, serine 2 isoform 2 
TMPRSS11D             0.159   transmembrane protease, serine 11D 
TMPRSS11B             0.157   transmembrane protease, serine 11B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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