Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TTLL3 Sequence: fasta or formatted (772aa) NCBI GI: 109134340
Description:

tubulin tyrosine ligase-like family, member 3

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         52           2
 C cysteine            2.8         22           2
 D aspartate           6.5         50           2
 E glutamate           5.3         41           3
 F phenylalanine       4.0         31           2
 G glycine             5.4         42           2
 H histidine           2.5         19           2
 I isoleucine          3.6         28           2
 K lysine              6.6         51           3
 L leucine            11.4         88           2
 M methionine          2.6         20           1
 N asparagine          3.1         24           2
 P proline             7.5         58           2
 Q glutamine           5.1         39           2
 R arginine            6.7         52           3
 S serine              5.2         40           2
 T threonine           4.3         33           2
 V valine              7.0         54           2
 W tryptophan          1.7         13           1
 Y tyrosine            1.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin tyrosine ligase-like family, member 3 [Homo... 
TTLL8                 0.279   tubulin tyrosine ligase-like family, member 8 [Homo...
TTLL1                 0.056   tubulin tyrosine ligase-like family, member 1 
TTLL5                 0.054   tubulin tyrosine ligase-like family, member 5 
TTLL2                 0.051   tubulin tyrosine ligase-like family, member 2 
TTLL10                0.049   tubulin tyrosine ligase-like family, member 10 isof...
TTLL9                 0.047   tubulin tyrosine ligase-like family, member 9 
TTL                   0.047   tubulin tyrosine ligase 
TTLL4                 0.045   tubulin tyrosine ligase-like family, member 4 [Homo...
TTLL7                 0.042   tubulin tyrosine ligase-like family, member 7 
TTLL13                0.042   tubulin tyrosine ligase-like family, member 13 [Homo...
TTLL6                 0.038   tubulin tyrosine ligase-like family, member 6 isofo...
TTLL11                0.029   tubulin tyrosine ligase-like family, member 11 a [H...
TTLL10                0.024   tubulin tyrosine ligase-like family, member 10 isof...
TTLL11                0.020   tubulin tyrosine ligase-like family, member 11 b [Ho...
TTLL12                0.015   tubulin tyrosine ligase-like family, member 12 [Homo...
TTLL6                 0.008   tubulin tyrosine ligase-like family, member 6 isofo...
GLTSCR1               0.006   glioma tumor suppressor candidate region gene 1 [Ho...
ZCCHC6                0.005   zinc finger, CCHC domain containing 6 
ADAM12                0.004   ADAM metallopeptidase domain 12 isoform 2 preproprot...
ADAM12                0.004   ADAM metallopeptidase domain 12 isoform 1 preproprot...
MAK16                 0.004   MAK16 homolog 
DST                   0.004   dystonin isoform 1eB precursor 
TSHZ1                 0.004   teashirt family zinc finger 1 
MYST4                 0.004   MYST histone acetyltransferase (monocytic leukemia)...
NPM1                  0.003   nucleophosmin 1 isoform 3 
NPM1                  0.003   nucleophosmin 1 isoform 2 
NPM1                  0.003   nucleophosmin 1 isoform 1 
LOC100294391          0.003   PREDICTED: hypothetical protein 
LOC100133001          0.003   PREDICTED: similar to hCG30082, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press