Guide to the Human Genome
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Name: LOC100294391 Sequence: fasta or formatted (263aa) NCBI GI: 239747190
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         17           3
 C cysteine            3.4          9           2
 D aspartate           1.5          4           1
 E glutamate           4.9         13           2
 F phenylalanine       2.7          7           1
 G glycine            10.3         27           2
 H histidine           4.9         13           1
 I isoleucine          1.5          4           1
 K lysine              4.2         11           1
 L leucine            11.0         29           2
 M methionine          1.9          5           1
 N asparagine          1.9          5           1
 P proline            12.5         33           2
 Q glutamine           6.8         18           4
 R arginine            9.9         26           2
 S serine              4.6         12           1
 T threonine           4.9         13           1
 V valine              3.0          8           1
 W tryptophan          2.7          7           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
CRTC1                 0.018   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.018   mucoepidermoid carcinoma translocated 1 isoform 1 [...
TICAM1                0.018   toll-like receptor adaptor molecule 1 
CAD                   0.016   carbamoylphosphate synthetase 2/aspartate transcarba...
WWP2                  0.016   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.016   WW domain containing E3 ubiquitin protein ligase 2 i...
SHANK3                0.015   SH3 and multiple ankyrin repeat domains 3 
BAT2                  0.015   HLA-B associated transcript-2 
LOC100293662          0.013   PREDICTED: hypothetical protein 
LOC100289444          0.013   PREDICTED: hypothetical protein 
LOC100289444          0.013   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.013   PREDICTED: hypothetical protein 
BAI1                  0.013   brain-specific angiogenesis inhibitor 1 precursor [...
ZNF628                0.013   zinc finger protein 628 
AEBP1                 0.013   adipocyte enhancer binding protein 1 precursor [Homo...
LOC441239             0.013   PREDICTED: hypothetical protein LOC441239 
LOC441239             0.013   PREDICTED: hypothetical protein LOC441239 
SAMD1                 0.013   sterile alpha motif domain containing 1 
LOC100132701          0.011   PREDICTED: hypothetical protein 
LOC100132701          0.011   PREDICTED: hypothetical protein 
TENC1                 0.011   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.011   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.011   tensin like C1 domain containing phosphatase isoform...
MED25                 0.011   mediator complex subunit 25 
C11orf41              0.011   hypothetical protein LOC25758 
PRDM13                0.011   PR domain containing 13 
LOC100291976          0.011   PREDICTED: hypothetical protein XP_002345754 
AMELX                 0.011   amelogenin (X chromosome) isoform 3 precursor 
AMELX                 0.011   amelogenin (X chromosome) isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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