Guide to the Human Genome
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Name: ZCCHC6 Sequence: fasta or formatted (1495aa) NCBI GI: 58331272
Description:

zinc finger, CCHC domain containing 6

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         64           3
 C cysteine            2.5         38           2
 D aspartate           6.8        101           4
 E glutamate           9.2        138           8
 F phenylalanine       3.9         59           2
 G glycine             5.6         84           2
 H histidine           2.5         38           2
 I isoleucine          5.3         79           2
 K lysine              9.0        135           3
 L leucine             8.9        133           3
 M methionine          1.5         22           1
 N asparagine          4.3         65           2
 P proline             5.5         82           3
 Q glutamine           4.0         60           2
 R arginine            6.2         92           4
 S serine              6.5         97           2
 T threonine           5.1         76           2
 V valine              5.2         78           3
 W tryptophan          0.9         14           1
 Y tyrosine            2.7         40           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, CCHC domain containing 6 
ZCCHC11               0.196   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.196   zinc finger, CCHC domain containing 11 isoform c [Ho...
ZCCHC11               0.196   zinc finger, CCHC domain containing 11 isoform a [Ho...
PAPD4                 0.044   PAP associated domain containing 4 
PAPD4                 0.044   PAP associated domain containing 4 
PAPD4                 0.044   PAP associated domain containing 4 
TUT1                  0.027   terminal uridylyl transferase 1, U6 snRNA-specific ...
MTPAP                 0.021   PAP associated domain containing 1 
PAPD5                 0.012   PAP associated domain containing 5 isoform b 
PAPD5                 0.012   PAP associated domain containing 5 isoform a 
POLS                  0.011   DNA polymerase sigma 
MYT1                  0.009   myelin transcription factor 1 
NCL                   0.009   nucleolin 
NRD1                  0.008   nardilysin isoform b 
NRD1                  0.008   nardilysin isoform a 
ANP32B                0.008   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
CDC2L1                0.008   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.008   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L2                0.008   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.008   cell division cycle 2-like 2 isoform 1 
SUPT5H                0.008   suppressor of Ty 5 homolog isoform b 
CDC2L1                0.008   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.008   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.008   cell division cycle 2-like 1 (PITSLRE proteins) isof...
DMP1                  0.008   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.008   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
CDC2L1                0.008   cell division cycle 2-like 1 (PITSLRE proteins) isof...
MYT1L                 0.008   myelin transcription factor 1-like 
NSBP1                 0.007   nucleosomal binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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