Guide to the Human Genome
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Name: TTL Sequence: fasta or formatted (377aa) NCBI GI: 24308516
Description:

tubulin tyrosine ligase

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         22           2
 C cysteine            1.9          7           1
 D aspartate           4.0         15           1
 E glutamate           8.0         30           2
 F phenylalanine       4.8         18           2
 G glycine             5.3         20           1
 H histidine           2.9         11           1
 I isoleucine          6.1         23           2
 K lysine              5.8         22           2
 L leucine            10.9         41           3
 M methionine          1.1          4           1
 N asparagine          5.3         20           1
 P proline             5.6         21           3
 Q glutamine           4.8         18           1
 R arginine            5.0         19           2
 S serine              6.9         26           2
 T threonine           3.7         14           1
 V valine              6.1         23           2
 W tryptophan          1.3          5           1
 Y tyrosine            4.8         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin tyrosine ligase 
TTLL2                 0.107   tubulin tyrosine ligase-like family, member 2 
TTLL3                 0.098   tubulin tyrosine ligase-like family, member 3 [Homo...
TTLL6                 0.097   tubulin tyrosine ligase-like family, member 6 isofo...
TTLL4                 0.084   tubulin tyrosine ligase-like family, member 4 [Homo...
TTLL5                 0.083   tubulin tyrosine ligase-like family, member 5 
TTLL1                 0.083   tubulin tyrosine ligase-like family, member 1 
TTLL8                 0.082   tubulin tyrosine ligase-like family, member 8 [Homo...
TTLL13                0.080   tubulin tyrosine ligase-like family, member 13 [Homo...
TTLL7                 0.078   tubulin tyrosine ligase-like family, member 7 
TTLL9                 0.078   tubulin tyrosine ligase-like family, member 9 
TTLL11                0.075   tubulin tyrosine ligase-like family, member 11 a [H...
TTLL10                0.074   tubulin tyrosine ligase-like family, member 10 isof...
TTLL11                0.056   tubulin tyrosine ligase-like family, member 11 b [Ho...
TTLL10                0.032   tubulin tyrosine ligase-like family, member 10 isof...
TTLL6                 0.019   tubulin tyrosine ligase-like family, member 6 isofo...
SLFN12L               0.009   schlafen family member 12-like 
DCP1B                 0.008   decapping enzyme Dcp1b 
TRIT1                 0.007   tRNA isopentenyltransferase 1 
ZSCAN20               0.007   zinc finger protein 31 
LRRC67                0.007   leucine rich repeat containing 67 
MSH2                  0.005   mutS homolog 2 
LYST                  0.005   lysosomal trafficking regulator 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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