Guide to the Human Genome
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Name: HSF1 Sequence: fasta or formatted (529aa) NCBI GI: 5031767
Description:

heat shock transcription factor 1

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         33           2
 C cysteine            0.9          5           1
 D aspartate           6.8         36           2
 E glutamate           6.0         32           2
 F phenylalanine       3.2         17           1
 G glycine             5.5         29           2
 H histidine           2.5         13           1
 I isoleucine          3.2         17           2
 K lysine              5.1         27           1
 L leucine            11.2         59           2
 M methionine          2.3         12           1
 N asparagine          2.8         15           2
 P proline            10.0         53           3
 Q glutamine           4.3         23           3
 R arginine            3.6         19           1
 S serine             13.2         70           4
 T threonine           4.7         25           1
 V valine              6.2         33           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock transcription factor 1 
HSF2                  0.262   heat shock transcription factor 2 isoform a 
HSF4                  0.251   heat shock transcription factor 4 isoform b 
HSF2                  0.250   heat shock transcription factor 2 isoform b 
HSF4                  0.229   heat shock transcription factor 4 isoform a 
HSF5                  0.034   heat shock transcription factor family member 5 [Ho...
LOC100133153          0.030   PREDICTED: similar to heat shock transcription fact...
LOC100133153          0.030   PREDICTED: similar to heat shock transcription fact...
HSFY1                 0.029   heat shock transcription factor, Y-linked 1 isoform ...
HSFY2                 0.029   heat shock transcription factor, Y linked 2 isoform ...
HSFX2                 0.023   PREDICTED: heat shock transcription factor family, ...
HSFX1                 0.023   heat shock transcription factor family, X linked 1 [H...
SRCAP                 0.021   Snf2-related CBP activator protein 
BCORL1                0.021   BCL6 co-repressor-like 1 
MED15                 0.020   mediator complex subunit 15 isoform b 
KCNH2                 0.020   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.020   voltage-gated potassium channel, subfamily H, member ...
ARAP3                 0.019   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
MLL2                  0.018   myeloid/lymphoid or mixed-lineage leukemia 2 
KIAA0754              0.018   hypothetical protein LOC643314 
KIAA1522              0.018   hypothetical protein LOC57648 
MUC7                  0.017   mucin 7, secreted precursor 
MUC7                  0.017   mucin 7, secreted precursor 
MUC7                  0.017   mucin 7, secreted precursor 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.017   PREDICTED: hypothetical protein LOC80164 
LOC100288540          0.017   PREDICTED: hypothetical protein XP_002342775 
WASF2                 0.017   WAS protein family, member 2 
HSFY1                 0.017   heat shock transcription factor, Y-linked 1 isoform ...
HSFY2                 0.017   heat shock transcription factor, Y linked 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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