Guide to the Human Genome
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Name: CSTF1 Sequence: fasta or formatted (431aa) NCBI GI: 4557491
Description:

cleavage stimulation factor subunit 1

Referenced in:

Polyadenylation
WD Repeat Proteins

Other entries for this name:
alt mRNA [431aa] cleavage stimulation factor subunit 1
alt mRNA [431aa] cleavage stimulation factor subunit 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         29           1
 C cysteine            3.2         14           2
 D aspartate           6.7         29           2
 E glutamate           4.9         21           1
 F phenylalanine       3.2         14           1
 G glycine             5.6         24           1
 H histidine           3.0         13           1
 I isoleucine          6.5         28           2
 K lysine              4.4         19           1
 L leucine             7.9         34           2
 M methionine          2.6         11           2
 N asparagine          4.2         18           2
 P proline             3.5         15           1
 Q glutamine           4.2         18           2
 R arginine            5.8         25           2
 S serine              9.0         39           2
 T threonine           7.7         33           2
 V valine              5.6         24           1
 W tryptophan          0.9          4           1
 Y tyrosine            4.4         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cleavage stimulation factor subunit 1 
CSTF1                 1.000   cleavage stimulation factor subunit 1 
CSTF1                 1.000   cleavage stimulation factor subunit 1 
WDR5B                 0.092   WD repeat domain 5B 
WDR69                 0.083   WD repeat domain 69 
WDR5                  0.082   WD repeat domain 5 
WDR5                  0.082   WD repeat domain 5 
WDR51A                0.070   WD repeat domain 51A isoform 3 
WDR51A                0.070   WD repeat domain 51A isoform 2 
WDR51A                0.070   WD repeat domain 51A isoform 1 
WDR51B                0.069   WD repeat domain 51B 
PAFAH1B1              0.065   platelet-activating factor acetylhydrolase, isoform I...
PRPF19                0.063   PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom...
TAF5                  0.058   TBP-associated factor 5 
FBXW7                 0.056   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.056   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.056   F-box and WD repeat domain containing 7 isoform 2 [H...
WDR38                 0.056   WD repeat domain 38 
STRN3                 0.056   nuclear autoantigen isoform 1 
STRN3                 0.056   nuclear autoantigen isoform 2 
KATNB1                0.055   katanin p80 subunit B 1 
SMU1                  0.054   smu-1 suppressor of mec-8 and unc-52 homolog 
SPAG16                0.053   sperm associated antigen 16 isoform 1 
WDR88                 0.051   PQQ repeat and WD repeat domain containing 
WDR55                 0.049   WD repeat domain 55 
STRN4                 0.049   zinedin isoform 2 
STRN4                 0.049   zinedin isoform 1 
WDR3                  0.048   WD repeat-containing protein 3 
APAF1                 0.048   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.048   apoptotic peptidase activating factor 1 isoform a [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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