BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4557293 autoimmune regulator isoform 2 [Homo sapiens] (348 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4557293 autoimmune regulator isoform 2 [Homo sapiens] 754 0.0 gi|4557291 autoimmune regulator isoform 1 [Homo sapiens] 550 e-157 gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 89 6e-18 gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 81 2e-15 gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 79 6e-15 gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 79 6e-15 gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 79 6e-15 gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 75 9e-14 gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 75 9e-14 gi|209977097 tripartite motif-containing 66 [Homo sapiens] 75 1e-13 gi|74027251 tripartite motif-containing 33 protein isoform beta ... 71 2e-12 gi|74027249 tripartite motif-containing 33 protein isoform alpha... 71 2e-12 gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens] 68 1e-11 gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens] 68 1e-11 gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens] 66 4e-11 gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens] 66 4e-11 gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens] 64 3e-10 gi|134133279 SP140 nuclear body protein-like [Homo sapiens] 64 3e-10 gi|38788260 bromodomain PHD finger transcription factor isoform ... 63 3e-10 gi|38788274 bromodomain PHD finger transcription factor isoform ... 63 3e-10 gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens] 62 8e-10 gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens] 62 8e-10 gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 62 8e-10 gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 61 2e-09 gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 58 1e-08 gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 58 1e-08 gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [H... 58 1e-08 gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 58 1e-08 gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 58 1e-08 gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens] 58 1e-08 >gi|4557293 autoimmune regulator isoform 2 [Homo sapiens] Length = 348 Score = 754 bits (1947), Expect = 0.0 Identities = 348/348 (100%), Positives = 348/348 (100%) Query: 1 MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRLGS 60 MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRLGS Sbjct: 1 MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRLGS 60 Query: 61 SGTQRCCWGSCFGKEVALRRVLHPSPVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRA 120 SGTQRCCWGSCFGKEVALRRVLHPSPVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRA Sbjct: 61 SGTQRCCWGSCFGKEVALRRVLHPSPVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRA 120 Query: 121 FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEV 180 FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEV Sbjct: 121 FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEV 180 Query: 181 RGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVC 240 RGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVC Sbjct: 181 RGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVC 240 Query: 241 GDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAP 300 GDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAP Sbjct: 241 GDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAP 300 Query: 301 GPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS 348 GPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS Sbjct: 301 GPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS 348 >gi|4557291 autoimmune regulator isoform 1 [Homo sapiens] Length = 545 Score = 550 bits (1418), Expect = e-157 Identities = 269/322 (83%), Positives = 279/322 (86%), Gaps = 5/322 (1%) Query: 29 GGVCWRPDGWGTGGQGRISGPGSMGAGQRLGSSGTQRCCWGSCFGKEVAL-RRVLHPSPV 87 GG + P + G G+ S G + + G Q G G E L ++ P+P+ Sbjct: 227 GGEFYTPSKFEDSGSGKNKARSSSGPKPLVRAKGAQGAAPG---GGEARLGQQGSVPAPL 283 Query: 88 CMGVSC-LCQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 146 + L QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA Sbjct: 284 ALPSDPQLHQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 343 Query: 147 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA 206 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA Sbjct: 344 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA 403 Query: 207 APLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT 266 APLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT Sbjct: 404 APLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT 463 Query: 267 SRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEH 326 SRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEH Sbjct: 464 SRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEH 523 Query: 327 TFDGILQWAIQSMARPAAPFPS 348 TFDGILQWAIQSMARPAAPFPS Sbjct: 524 TFDGILQWAIQSMARPAAPFPS 545 Score = 28.9 bits (63), Expect = 7.1 Identities = 43/153 (28%), Positives = 55/153 (35%), Gaps = 27/153 (17%) Query: 115 DGCPRAFHLACLSPPLREIPSGT---W-------------RCSSCLQATVQEV---QPRA 155 +GCP+AFH A LS L + + W R L + ++V QPR Sbjct: 53 EGCPQAFH-ALLSWLLTQDSTAILDFWRVLFKDYNLERYGRLQPILDSFPKDVDLSQPRK 111 Query: 156 EEPRPQEPPVETPLP--PGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLD 213 P P P P P R A EE R L T L A P P + Sbjct: 112 GRKPPAVPKALVPPPRLPTKRKASEEARAAAPAALTPRGTASPGSQLKAKPPKKP----E 167 Query: 214 SSALHPLLCVGPEGQQNLAPGARCGVCGDGTDV 246 SSA L +G G Q ++ + V DV Sbjct: 168 SSAEQQRLPLG-NGIQTMSASVQRAVAMSSGDV 199 >gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sapiens] Length = 1954 Score = 89.0 bits (219), Expect = 6e-18 Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 6/101 (5%) Query: 95 CQKNEDE----CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150 C++ ED+ C VC+DGGEL+CCD CP ++HL CL+PPL EIP+G W C C ++ Sbjct: 408 CEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKG 467 Query: 151 VQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGM 191 R R EPP P GL E PP +PL G+ Sbjct: 468 KVQRILHWRWTEPP--APFMVGLPGPDVEPSLPPPKPLEGI 506 Score = 70.5 bits (171), Expect = 2e-12 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157 ++D C VC+ GGE+I CD CPRA+HL CL P L + P G W C C + +Q +P+ ++ Sbjct: 342 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQ-WEPKDDD 400 Query: 158 PRPQE 162 +E Sbjct: 401 DEEEE 405 Score = 34.7 bits (78), Expect = 0.13 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVL----- 291 C VC DG ++L C C +++H C P P C C+ V+ +L Sbjct: 419 CRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWT 478 Query: 292 -APSPARLA-PGP 302 P+P + PGP Sbjct: 479 EPPAPFMVGLPGP 491 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/42 (30%), Positives = 17/42 (40%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278 C VC G +++ C C A+H C P P C C Sbjct: 346 CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHC 387 >gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sapiens] Length = 1912 Score = 80.9 bits (198), Expect = 2e-15 Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 12/89 (13%) Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC----LQATVQEV------ 151 C VC+DGGEL+CCD CP ++H+ CL+PPL EIP+G W C C L+ VQ++ Sbjct: 452 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWG 511 Query: 152 QPRAEEPRPQEPPVE--TPLPPGLRSAGE 178 QP + P P+ P + TP P L E Sbjct: 512 QPPSPTPVPRPPDADPNTPSPKPLEGRPE 540 Score = 75.5 bits (184), Expect = 7e-14 Identities = 61/244 (25%), Positives = 91/244 (37%), Gaps = 66/244 (27%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157 ++D C VC+ GGE+I CD CPRA+H+ CL P + + P G W C C + + +Q A+E Sbjct: 369 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK---EGIQWEAKE 425 Query: 158 PRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSAL 217 S GEE+ G L D H+ Sbjct: 426 D---------------NSEGEEILEEVGGDLEEEDD----HHMEF--------------- 451 Query: 218 HPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRS 277 C VC DG ++L C C +++H C P P C Sbjct: 452 -------------------CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPR 492 Query: 278 CSGDVTPAPVEGVL------APSPARL-APGPAKDDTASHEPALHRDDLESLLSEHTFDG 330 C+ V+ +L PSP + P A +T S +P R + + + + G Sbjct: 493 CTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGRPERQFFVK---WQG 549 Query: 331 ILQW 334 + W Sbjct: 550 MSYW 553 >gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1 [Homo sapiens] Length = 2000 Score = 79.0 bits (193), Expect = 6e-15 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQ 161 C VC+DGGEL+CCD C ++H+ CL+PPL +IP+G W C C ++ + R Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518 Query: 162 EPPVETPLPPGLRSAGEEVRGPPGEPLAG 190 EPPV P P + A PP PL G Sbjct: 519 EPPVAVPAP---QQADGNPDVPPPRPLQG 544 Score = 70.5 bits (171), Expect = 2e-12 Identities = 30/65 (46%), Positives = 37/65 (56%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157 ++D C VC+ GGE+I CD CPRA+HL CL P L P G W C C + VQ EE Sbjct: 378 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE 437 Query: 158 PRPQE 162 +E Sbjct: 438 EYEEE 442 Score = 35.8 bits (81), Expect = 0.058 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLA---P 293 C VC DG ++L C C +++H C P P C C+ V V+ +L Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518 Query: 294 SPARLAPGPAKDD 306 P P P + D Sbjct: 519 EPPVAVPAPQQAD 531 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/42 (30%), Positives = 17/42 (40%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278 C VC G +++ C C A+H C P P C C Sbjct: 382 CEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423 >gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2 [Homo sapiens] Length = 1966 Score = 79.0 bits (193), Expect = 6e-15 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQ 161 C VC+DGGEL+CCD C ++H+ CL+PPL +IP+G W C C ++ + R Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518 Query: 162 EPPVETPLPPGLRSAGEEVRGPPGEPLAG 190 EPPV P P + A PP PL G Sbjct: 519 EPPVAVPAP---QQADGNPDVPPPRPLQG 544 Score = 70.5 bits (171), Expect = 2e-12 Identities = 30/65 (46%), Positives = 37/65 (56%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157 ++D C VC+ GGE+I CD CPRA+HL CL P L P G W C C + VQ EE Sbjct: 378 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE 437 Query: 158 PRPQE 162 +E Sbjct: 438 EYEEE 442 Score = 35.8 bits (81), Expect = 0.058 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLA---P 293 C VC DG ++L C C +++H C P P C C+ V V+ +L Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518 Query: 294 SPARLAPGPAKDD 306 P P P + D Sbjct: 519 EPPVAVPAPQQAD 531 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/42 (30%), Positives = 17/42 (40%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278 C VC G +++ C C A+H C P P C C Sbjct: 382 CEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423 >gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3 [Homo sapiens] Length = 2059 Score = 79.0 bits (193), Expect = 6e-15 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQ 161 C VC+DGGEL+CCD C ++H+ CL+PPL +IP+G W C C ++ + R Sbjct: 518 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 577 Query: 162 EPPVETPLPPGLRSAGEEVRGPPGEPLAG 190 EPPV P P + A PP PL G Sbjct: 578 EPPVAVPAP---QQADGNPDVPPPRPLQG 603 Score = 70.5 bits (171), Expect = 2e-12 Identities = 30/65 (46%), Positives = 37/65 (56%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157 ++D C VC+ GGE+I CD CPRA+HL CL P L P G W C C + VQ EE Sbjct: 437 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE 496 Query: 158 PRPQE 162 +E Sbjct: 497 EYEEE 501 Score = 35.8 bits (81), Expect = 0.058 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLA---P 293 C VC DG ++L C C +++H C P P C C+ V V+ +L Sbjct: 518 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 577 Query: 294 SPARLAPGPAKDD 306 P P P + D Sbjct: 578 EPPVAVPAPQQAD 590 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/42 (30%), Positives = 17/42 (40%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278 C VC G +++ C C A+H C P P C C Sbjct: 441 CEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 482 >gi|47419911 transcriptional intermediary factor 1 alpha isoform a [Homo sapiens] Length = 1050 Score = 75.1 bits (183), Expect = 9e-14 Identities = 30/61 (49%), Positives = 40/61 (65%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157 NED CAVC++GGEL+CC+ CP+ FHL+C P L PSG W C+ C + EV+ + Sbjct: 825 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 884 Query: 158 P 158 P Sbjct: 885 P 885 Score = 39.7 bits (91), Expect = 0.004 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 212 LDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGT 271 LD S PL VG +++ C VC +G ++L C C FH CH P T+ P Sbjct: 805 LDPSQKSPLH-VGETRKEDDPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSG 863 Query: 272 GLRCRSCSGDVTPAPVE 288 C C D++ VE Sbjct: 864 EWICTFCR-DLSKPEVE 879 >gi|47419909 transcriptional intermediary factor 1 alpha isoform b [Homo sapiens] Length = 1016 Score = 75.1 bits (183), Expect = 9e-14 Identities = 30/61 (49%), Positives = 40/61 (65%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157 NED CAVC++GGEL+CC+ CP+ FHL+C P L PSG W C+ C + EV+ + Sbjct: 791 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 850 Query: 158 P 158 P Sbjct: 851 P 851 Score = 39.7 bits (91), Expect = 0.004 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 212 LDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGT 271 LD S PL VG +++ C VC +G ++L C C FH CH P T+ P Sbjct: 771 LDPSQKSPLH-VGETRKEDDPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSG 829 Query: 272 GLRCRSCSGDVTPAPVE 288 C C D++ VE Sbjct: 830 EWICTFCR-DLSKPEVE 845 >gi|209977097 tripartite motif-containing 66 [Homo sapiens] Length = 1216 Score = 74.7 bits (182), Expect = 1e-13 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 97 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAE 156 +NED CAVC +GGEL+CCD CP+ FHL+C P L P G W C+ C T E++ E Sbjct: 968 ENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCE 1027 Query: 157 EPRPQEPPVETPLPPGL 173 +P + PGL Sbjct: 1028 NACYNQPGMRA--SPGL 1042 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/48 (39%), Positives = 22/48 (45%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 284 C VC +G ++L C C FH CH PA S PG C C P Sbjct: 973 CAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQP 1020 >gi|74027251 tripartite motif-containing 33 protein isoform beta [Homo sapiens] Length = 1110 Score = 70.9 bits (172), Expect = 2e-12 Identities = 28/55 (50%), Positives = 36/55 (65%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 152 NED CAVC++GG+L+CC+ CP+ FHL C P L PSG W C+ C EV+ Sbjct: 886 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVE 940 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/42 (40%), Positives = 19/42 (45%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278 C VC +G D+L C C FH CH P S P C C Sbjct: 890 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 931 Score = 29.3 bits (64), Expect = 5.5 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 9/90 (10%) Query: 168 PLPPGLRSAGEEVRGPPGEPLAGMDTTLV-YKHLPAPPSAAP--LPGLDSSALHPLLCVG 224 P P + G PPG P + +DT V + L + A P LP L S L L Sbjct: 99 PAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL---- 154 Query: 225 PEGQQNLAPGARCGVCGD--GTDVLRCTHC 252 PE ++ L+ G GD V+RC C Sbjct: 155 PEPERQLSVPIPGGSNGDIQQVGVIRCPVC 184 >gi|74027249 tripartite motif-containing 33 protein isoform alpha [Homo sapiens] Length = 1127 Score = 70.9 bits (172), Expect = 2e-12 Identities = 28/55 (50%), Positives = 36/55 (65%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 152 NED CAVC++GG+L+CC+ CP+ FHL C P L PSG W C+ C EV+ Sbjct: 886 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVE 940 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/42 (40%), Positives = 19/42 (45%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278 C VC +G D+L C C FH CH P S P C C Sbjct: 890 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 931 Score = 29.3 bits (64), Expect = 5.5 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 9/90 (10%) Query: 168 PLPPGLRSAGEEVRGPPGEPLAGMDTTLV-YKHLPAPPSAAP--LPGLDSSALHPLLCVG 224 P P + G PPG P + +DT V + L + A P LP L S L L Sbjct: 99 PAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL---- 154 Query: 225 PEGQQNLAPGARCGVCGD--GTDVLRCTHC 252 PE ++ L+ G GD V+RC C Sbjct: 155 PEPERQLSVPIPGGSNGDIQQVGVIRCPVC 184 >gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens] Length = 1004 Score = 68.2 bits (165), Expect = 1e-11 Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLRE--IPSGTWRCSSC 143 N D C C++GG+L+CCD CP AFHL C +PPL E +P G W C C Sbjct: 55 NHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC 102 Score = 45.4 bits (106), Expect = 7e-05 Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 111 LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 148 LI CD CP FH+ CL PPL +P G W C + ++ V Sbjct: 286 LIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVV 323 Score = 36.2 bits (82), Expect = 0.045 Identities = 14/27 (51%), Positives = 17/27 (62%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263 C C +G D+L C HC AAFH +C P Sbjct: 59 CDSCKEGGDLLCCDHCPAAFHLQCCNP 85 >gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens] Length = 704 Score = 68.2 bits (165), Expect = 1e-11 Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLRE--IPSGTWRCSSC 143 N D C C++GG+L+CCD CP AFHL C +PPL E +P G W C C Sbjct: 55 NHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC 102 Score = 45.4 bits (106), Expect = 7e-05 Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 111 LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 148 LI CD CP FH+ CL PPL +P G W C + ++ V Sbjct: 286 LIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVV 323 Score = 36.2 bits (82), Expect = 0.045 Identities = 14/27 (51%), Positives = 17/27 (62%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263 C C +G D+L C HC AAFH +C P Sbjct: 59 CDSCKEGGDLLCCDHCPAAFHLQCCNP 85 >gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens] Length = 634 Score = 66.2 bits (160), Expect = 4e-11 Identities = 25/46 (54%), Positives = 31/46 (67%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143 +ED C+VCR G+L+ CD C R +HL CL PPL+ IP G W C C Sbjct: 441 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 486 >gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens] Length = 680 Score = 66.2 bits (160), Expect = 4e-11 Identities = 25/46 (54%), Positives = 31/46 (67%) Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143 +ED C+VCR G+L+ CD C R +HL CL PPL+ IP G W C C Sbjct: 487 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 532 >gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens] Length = 867 Score = 63.5 bits (153), Expect = 3e-10 Identities = 27/49 (55%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 95 CQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143 C +N DEC VCRDGGEL CCD C R FH C PP+ E W C C Sbjct: 686 CMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-EAERTPWNCIFC 733 Score = 33.9 bits (76), Expect = 0.22 Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263 C VC DG ++ C C+ FH CH P Sbjct: 693 CEVCRDGGELFCCDTCSRVFHEDCHIP 719 >gi|134133279 SP140 nuclear body protein-like [Homo sapiens] Length = 580 Score = 63.5 bits (153), Expect = 3e-10 Identities = 27/49 (55%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 95 CQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143 C +N DEC VCRDGGEL CCD C R FH C PP+ E W C C Sbjct: 399 CMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFC 446 Score = 34.3 bits (77), Expect = 0.17 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSR--PGTGLRCR 276 C VC DG ++ C C+ FH CH P S P + CR Sbjct: 406 CEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTPWNCIFCR 447 >gi|38788260 bromodomain PHD finger transcription factor isoform 2 [Homo sapiens] Length = 2903 Score = 63.2 bits (152), Expect = 3e-10 Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 99 EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEP 158 +D C VC G+L+CC+ C +HL C+ PPL E+P W+C C+ V V E Sbjct: 390 DDHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAEI 449 Query: 159 RPQEP 163 + +P Sbjct: 450 QKNKP 454 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGV 290 C VC D+L C C+A +H C P P +C C P + V Sbjct: 393 CRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCV 446 >gi|38788274 bromodomain PHD finger transcription factor isoform 1 [Homo sapiens] Length = 2920 Score = 63.2 bits (152), Expect = 3e-10 Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 99 EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEP 158 +D C VC G+L+CC+ C +HL C+ PPL E+P W+C C+ V V E Sbjct: 390 DDHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAEI 449 Query: 159 RPQEP 163 + +P Sbjct: 450 QKNKP 454 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGV 290 C VC D+L C C+A +H C P P +C C P + V Sbjct: 393 CRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCV 446 >gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens] Length = 489 Score = 62.0 bits (149), Expect = 8e-10 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 95 CQKNE----DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150 C KNE + CA C+ G L C CP A+HL+CL PPL+ P G W C C Q +++ Sbjct: 302 CWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 361 >gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens] Length = 531 Score = 62.0 bits (149), Expect = 8e-10 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 95 CQKNE----DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150 C KNE + CA C+ G L C CP A+HL+CL PPL+ P G W C C Q +++ Sbjct: 344 CWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 403 >gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] Length = 948 Score = 62.0 bits (149), Expect = 8e-10 Identities = 53/217 (24%), Positives = 81/217 (37%), Gaps = 55/217 (25%) Query: 92 SC-LCQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGT----WRCSSCLQA 146 SC +C+KN D+ L+ CD C +HL CL PPL +P T W+CS C QA Sbjct: 727 SCGICKKNHDQHL-------LLLCDTCKLHYHLGCLDPPLTRMPRKTKNSYWQCSECDQA 779 Query: 147 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA 206 +++ + +ET LP G + + +++ P V + +P P Sbjct: 780 GSSDME--------ADMAMET-LPDGTKRSRRQIKEP---------VKFVPQDVPPEPKK 821 Query: 207 APLPGLDSSALHPLLCVGPEGQQNLAPGAR-------------------CGVC---GDGT 244 P+ + E + P R C C GD Sbjct: 822 IPIRNTRTRGRKRSFVPEEEKHEERVPRERRQRQSVLQKKPKAEDLRTECATCKGTGDNE 881 Query: 245 DVLRCTHCAAAFHWRCHFPAGTSRP---GTGLRCRSC 278 +++RC C +H+ C P P G G C+ C Sbjct: 882 NLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQEC 918 Score = 48.9 bits (115), Expect = 7e-06 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 101 ECAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGT---WRCSSCLQATVQEVQPR 154 ECA C+ G+ L+ CD C +H CL PPL++ P T W C C ++ +E + Sbjct: 870 ECATCKGTGDNENLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQECDSSSSKEDENE 929 Query: 155 AE 156 AE Sbjct: 930 AE 931 >gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo sapiens] Length = 1483 Score = 60.8 bits (146), Expect = 2e-09 Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 149 C VCR GE LI CD C +AFHL CL P L E+P G W+C +C AT + Sbjct: 1187 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPATAR 1237 >gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo sapiens] Length = 1379 Score = 58.2 bits (139), Expect = 1e-08 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 146 C +C G E L+ CDGC +H+ CL PPL EIP G WRC C+ A Sbjct: 260 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMA 307 >gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo sapiens] Length = 1560 Score = 58.2 bits (139), Expect = 1e-08 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 146 C +C G E L+ CDGC +H+ CL PPL EIP G WRC C+ A Sbjct: 327 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMA 374 >gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [Homo sapiens] Length = 1482 Score = 58.2 bits (139), Expect = 1e-08 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150 C VC G E L+ CDGC +H+ CL PPL EIP G WRC C+ A ++ Sbjct: 260 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 311 >gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo sapiens] Length = 1539 Score = 58.2 bits (139), Expect = 1e-08 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150 C VC G E L+ CDGC +H+ CL PPL EIP G WRC C+ A ++ Sbjct: 317 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 368 >gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo sapiens] Length = 1570 Score = 58.2 bits (139), Expect = 1e-08 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150 C VC G E L+ CDGC +H+ CL PPL EIP G WRC C+ A ++ Sbjct: 317 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 368 >gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens] Length = 689 Score = 58.2 bits (139), Expect = 1e-08 Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 94 LCQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143 L +KN DEC VC GG+L+CC CPR FH C PP+ E W C+ C Sbjct: 529 LKRKNSDECEVCCQGGQLLCCGTCPRVFHEDCHIPPV-EAKRMLWSCTFC 577 Score = 30.8 bits (68), Expect = 1.9 Identities = 12/27 (44%), Positives = 13/27 (48%) Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263 C VC G +L C C FH CH P Sbjct: 537 CEVCCQGGQLLCCGTCPRVFHEDCHIP 563 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.138 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,433,046 Number of Sequences: 37866 Number of extensions: 1374772 Number of successful extensions: 8178 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 433 Number of HSP's that attempted gapping in prelim test: 6972 Number of HSP's gapped (non-prelim): 1517 length of query: 348 length of database: 18,247,518 effective HSP length: 103 effective length of query: 245 effective length of database: 14,347,320 effective search space: 3515093400 effective search space used: 3515093400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.