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Search of human proteins with 4557293
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
(348 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557293 autoimmune regulator isoform 2 [Homo sapiens] 754 0.0
gi|4557291 autoimmune regulator isoform 1 [Homo sapiens] 550 e-157
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 89 6e-18
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 81 2e-15
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 79 6e-15
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 79 6e-15
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 79 6e-15
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 75 9e-14
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 75 9e-14
gi|209977097 tripartite motif-containing 66 [Homo sapiens] 75 1e-13
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 71 2e-12
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 71 2e-12
gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens] 68 1e-11
gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens] 68 1e-11
gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens] 66 4e-11
gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens] 66 4e-11
gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens] 64 3e-10
gi|134133279 SP140 nuclear body protein-like [Homo sapiens] 64 3e-10
gi|38788260 bromodomain PHD finger transcription factor isoform ... 63 3e-10
gi|38788274 bromodomain PHD finger transcription factor isoform ... 63 3e-10
gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens] 62 8e-10
gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens] 62 8e-10
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 62 8e-10
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 61 2e-09
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 58 1e-08
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 58 1e-08
gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [H... 58 1e-08
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 58 1e-08
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 58 1e-08
gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens] 58 1e-08
>gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
Length = 348
Score = 754 bits (1947), Expect = 0.0
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRLGS 60
MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRLGS
Sbjct: 1 MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRLGS 60
Query: 61 SGTQRCCWGSCFGKEVALRRVLHPSPVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRA 120
SGTQRCCWGSCFGKEVALRRVLHPSPVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRA
Sbjct: 61 SGTQRCCWGSCFGKEVALRRVLHPSPVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRA 120
Query: 121 FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEV 180
FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEV
Sbjct: 121 FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEV 180
Query: 181 RGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVC 240
RGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVC
Sbjct: 181 RGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVC 240
Query: 241 GDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAP 300
GDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAP
Sbjct: 241 GDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAP 300
Query: 301 GPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS 348
GPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS
Sbjct: 301 GPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS 348
>gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]
Length = 545
Score = 550 bits (1418), Expect = e-157
Identities = 269/322 (83%), Positives = 279/322 (86%), Gaps = 5/322 (1%)
Query: 29 GGVCWRPDGWGTGGQGRISGPGSMGAGQRLGSSGTQRCCWGSCFGKEVAL-RRVLHPSPV 87
GG + P + G G+ S G + + G Q G G E L ++ P+P+
Sbjct: 227 GGEFYTPSKFEDSGSGKNKARSSSGPKPLVRAKGAQGAAPG---GGEARLGQQGSVPAPL 283
Query: 88 CMGVSC-LCQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 146
+ L QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA
Sbjct: 284 ALPSDPQLHQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 343
Query: 147 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA 206
TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA
Sbjct: 344 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA 403
Query: 207 APLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT 266
APLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT
Sbjct: 404 APLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT 463
Query: 267 SRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEH 326
SRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEH
Sbjct: 464 SRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEH 523
Query: 327 TFDGILQWAIQSMARPAAPFPS 348
TFDGILQWAIQSMARPAAPFPS
Sbjct: 524 TFDGILQWAIQSMARPAAPFPS 545
Score = 28.9 bits (63), Expect = 7.1
Identities = 43/153 (28%), Positives = 55/153 (35%), Gaps = 27/153 (17%)
Query: 115 DGCPRAFHLACLSPPLREIPSGT---W-------------RCSSCLQATVQEV---QPRA 155
+GCP+AFH A LS L + + W R L + ++V QPR
Sbjct: 53 EGCPQAFH-ALLSWLLTQDSTAILDFWRVLFKDYNLERYGRLQPILDSFPKDVDLSQPRK 111
Query: 156 EEPRPQEPPVETPLP--PGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLD 213
P P P P P R A EE R L T L A P P +
Sbjct: 112 GRKPPAVPKALVPPPRLPTKRKASEEARAAAPAALTPRGTASPGSQLKAKPPKKP----E 167
Query: 214 SSALHPLLCVGPEGQQNLAPGARCGVCGDGTDV 246
SSA L +G G Q ++ + V DV
Sbjct: 168 SSAEQQRLPLG-NGIQTMSASVQRAVAMSSGDV 199
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 89.0 bits (219), Expect = 6e-18
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 95 CQKNEDE----CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
C++ ED+ C VC+DGGEL+CCD CP ++HL CL+PPL EIP+G W C C ++
Sbjct: 408 CEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKG 467
Query: 151 VQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGM 191
R R EPP P GL E PP +PL G+
Sbjct: 468 KVQRILHWRWTEPP--APFMVGLPGPDVEPSLPPPKPLEGI 506
Score = 70.5 bits (171), Expect = 2e-12
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
++D C VC+ GGE+I CD CPRA+HL CL P L + P G W C C + +Q +P+ ++
Sbjct: 342 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQ-WEPKDDD 400
Query: 158 PRPQE 162
+E
Sbjct: 401 DEEEE 405
Score = 34.7 bits (78), Expect = 0.13
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVL----- 291
C VC DG ++L C C +++H C P P C C+ V+ +L
Sbjct: 419 CRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWT 478
Query: 292 -APSPARLA-PGP 302
P+P + PGP
Sbjct: 479 EPPAPFMVGLPGP 491
Score = 30.0 bits (66), Expect = 3.2
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
C VC G +++ C C A+H C P P C C
Sbjct: 346 CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHC 387
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 80.9 bits (198), Expect = 2e-15
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 12/89 (13%)
Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC----LQATVQEV------ 151
C VC+DGGEL+CCD CP ++H+ CL+PPL EIP+G W C C L+ VQ++
Sbjct: 452 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWG 511
Query: 152 QPRAEEPRPQEPPVE--TPLPPGLRSAGE 178
QP + P P+ P + TP P L E
Sbjct: 512 QPPSPTPVPRPPDADPNTPSPKPLEGRPE 540
Score = 75.5 bits (184), Expect = 7e-14
Identities = 61/244 (25%), Positives = 91/244 (37%), Gaps = 66/244 (27%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
++D C VC+ GGE+I CD CPRA+H+ CL P + + P G W C C + + +Q A+E
Sbjct: 369 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK---EGIQWEAKE 425
Query: 158 PRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSAL 217
S GEE+ G L D H+
Sbjct: 426 D---------------NSEGEEILEEVGGDLEEEDD----HHMEF--------------- 451
Query: 218 HPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRS 277
C VC DG ++L C C +++H C P P C
Sbjct: 452 -------------------CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPR 492
Query: 278 CSGDVTPAPVEGVL------APSPARL-APGPAKDDTASHEPALHRDDLESLLSEHTFDG 330
C+ V+ +L PSP + P A +T S +P R + + + + G
Sbjct: 493 CTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGRPERQFFVK---WQG 549
Query: 331 ILQW 334
+ W
Sbjct: 550 MSYW 553
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 79.0 bits (193), Expect = 6e-15
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQ 161
C VC+DGGEL+CCD C ++H+ CL+PPL +IP+G W C C ++ + R
Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518
Query: 162 EPPVETPLPPGLRSAGEEVRGPPGEPLAG 190
EPPV P P + A PP PL G
Sbjct: 519 EPPVAVPAP---QQADGNPDVPPPRPLQG 544
Score = 70.5 bits (171), Expect = 2e-12
Identities = 30/65 (46%), Positives = 37/65 (56%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
++D C VC+ GGE+I CD CPRA+HL CL P L P G W C C + VQ EE
Sbjct: 378 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE 437
Query: 158 PRPQE 162
+E
Sbjct: 438 EYEEE 442
Score = 35.8 bits (81), Expect = 0.058
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLA---P 293
C VC DG ++L C C +++H C P P C C+ V V+ +L
Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518
Query: 294 SPARLAPGPAKDD 306
P P P + D
Sbjct: 519 EPPVAVPAPQQAD 531
Score = 29.6 bits (65), Expect = 4.2
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
C VC G +++ C C A+H C P P C C
Sbjct: 382 CEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 79.0 bits (193), Expect = 6e-15
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQ 161
C VC+DGGEL+CCD C ++H+ CL+PPL +IP+G W C C ++ + R
Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518
Query: 162 EPPVETPLPPGLRSAGEEVRGPPGEPLAG 190
EPPV P P + A PP PL G
Sbjct: 519 EPPVAVPAP---QQADGNPDVPPPRPLQG 544
Score = 70.5 bits (171), Expect = 2e-12
Identities = 30/65 (46%), Positives = 37/65 (56%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
++D C VC+ GGE+I CD CPRA+HL CL P L P G W C C + VQ EE
Sbjct: 378 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE 437
Query: 158 PRPQE 162
+E
Sbjct: 438 EYEEE 442
Score = 35.8 bits (81), Expect = 0.058
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLA---P 293
C VC DG ++L C C +++H C P P C C+ V V+ +L
Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518
Query: 294 SPARLAPGPAKDD 306
P P P + D
Sbjct: 519 EPPVAVPAPQQAD 531
Score = 29.6 bits (65), Expect = 4.2
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
C VC G +++ C C A+H C P P C C
Sbjct: 382 CEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 79.0 bits (193), Expect = 6e-15
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQ 161
C VC+DGGEL+CCD C ++H+ CL+PPL +IP+G W C C ++ + R
Sbjct: 518 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 577
Query: 162 EPPVETPLPPGLRSAGEEVRGPPGEPLAG 190
EPPV P P + A PP PL G
Sbjct: 578 EPPVAVPAP---QQADGNPDVPPPRPLQG 603
Score = 70.5 bits (171), Expect = 2e-12
Identities = 30/65 (46%), Positives = 37/65 (56%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
++D C VC+ GGE+I CD CPRA+HL CL P L P G W C C + VQ EE
Sbjct: 437 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE 496
Query: 158 PRPQE 162
+E
Sbjct: 497 EYEEE 501
Score = 35.8 bits (81), Expect = 0.058
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLA---P 293
C VC DG ++L C C +++H C P P C C+ V V+ +L
Sbjct: 518 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 577
Query: 294 SPARLAPGPAKDD 306
P P P + D
Sbjct: 578 EPPVAVPAPQQAD 590
Score = 29.6 bits (65), Expect = 4.2
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
C VC G +++ C C A+H C P P C C
Sbjct: 441 CEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 482
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 75.1 bits (183), Expect = 9e-14
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
NED CAVC++GGEL+CC+ CP+ FHL+C P L PSG W C+ C + EV+ +
Sbjct: 825 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 884
Query: 158 P 158
P
Sbjct: 885 P 885
Score = 39.7 bits (91), Expect = 0.004
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 212 LDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGT 271
LD S PL VG +++ C VC +G ++L C C FH CH P T+ P
Sbjct: 805 LDPSQKSPLH-VGETRKEDDPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSG 863
Query: 272 GLRCRSCSGDVTPAPVE 288
C C D++ VE
Sbjct: 864 EWICTFCR-DLSKPEVE 879
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 75.1 bits (183), Expect = 9e-14
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
NED CAVC++GGEL+CC+ CP+ FHL+C P L PSG W C+ C + EV+ +
Sbjct: 791 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 850
Query: 158 P 158
P
Sbjct: 851 P 851
Score = 39.7 bits (91), Expect = 0.004
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 212 LDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGT 271
LD S PL VG +++ C VC +G ++L C C FH CH P T+ P
Sbjct: 771 LDPSQKSPLH-VGETRKEDDPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSG 829
Query: 272 GLRCRSCSGDVTPAPVE 288
C C D++ VE
Sbjct: 830 EWICTFCR-DLSKPEVE 845
>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
Length = 1216
Score = 74.7 bits (182), Expect = 1e-13
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 97 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAE 156
+NED CAVC +GGEL+CCD CP+ FHL+C P L P G W C+ C T E++ E
Sbjct: 968 ENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCE 1027
Query: 157 EPRPQEPPVETPLPPGL 173
+P + PGL
Sbjct: 1028 NACYNQPGMRA--SPGL 1042
Score = 41.6 bits (96), Expect = 0.001
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 284
C VC +G ++L C C FH CH PA S PG C C P
Sbjct: 973 CAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQP 1020
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 70.9 bits (172), Expect = 2e-12
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 152
NED CAVC++GG+L+CC+ CP+ FHL C P L PSG W C+ C EV+
Sbjct: 886 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVE 940
Score = 39.7 bits (91), Expect = 0.004
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
C VC +G D+L C C FH CH P S P C C
Sbjct: 890 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 931
Score = 29.3 bits (64), Expect = 5.5
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 168 PLPPGLRSAGEEVRGPPGEPLAGMDTTLV-YKHLPAPPSAAP--LPGLDSSALHPLLCVG 224
P P + G PPG P + +DT V + L + A P LP L S L L
Sbjct: 99 PAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL---- 154
Query: 225 PEGQQNLAPGARCGVCGD--GTDVLRCTHC 252
PE ++ L+ G GD V+RC C
Sbjct: 155 PEPERQLSVPIPGGSNGDIQQVGVIRCPVC 184
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 70.9 bits (172), Expect = 2e-12
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 152
NED CAVC++GG+L+CC+ CP+ FHL C P L PSG W C+ C EV+
Sbjct: 886 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVE 940
Score = 39.7 bits (91), Expect = 0.004
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
C VC +G D+L C C FH CH P S P C C
Sbjct: 890 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 931
Score = 29.3 bits (64), Expect = 5.5
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 168 PLPPGLRSAGEEVRGPPGEPLAGMDTTLV-YKHLPAPPSAAP--LPGLDSSALHPLLCVG 224
P P + G PPG P + +DT V + L + A P LP L S L L
Sbjct: 99 PAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL---- 154
Query: 225 PEGQQNLAPGARCGVCGD--GTDVLRCTHC 252
PE ++ L+ G GD V+RC C
Sbjct: 155 PEPERQLSVPIPGGSNGDIQQVGVIRCPVC 184
>gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens]
Length = 1004
Score = 68.2 bits (165), Expect = 1e-11
Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLRE--IPSGTWRCSSC 143
N D C C++GG+L+CCD CP AFHL C +PPL E +P G W C C
Sbjct: 55 NHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC 102
Score = 45.4 bits (106), Expect = 7e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 111 LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 148
LI CD CP FH+ CL PPL +P G W C + ++ V
Sbjct: 286 LIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVV 323
Score = 36.2 bits (82), Expect = 0.045
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263
C C +G D+L C HC AAFH +C P
Sbjct: 59 CDSCKEGGDLLCCDHCPAAFHLQCCNP 85
>gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens]
Length = 704
Score = 68.2 bits (165), Expect = 1e-11
Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLRE--IPSGTWRCSSC 143
N D C C++GG+L+CCD CP AFHL C +PPL E +P G W C C
Sbjct: 55 NHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC 102
Score = 45.4 bits (106), Expect = 7e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 111 LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 148
LI CD CP FH+ CL PPL +P G W C + ++ V
Sbjct: 286 LIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVV 323
Score = 36.2 bits (82), Expect = 0.045
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263
C C +G D+L C HC AAFH +C P
Sbjct: 59 CDSCKEGGDLLCCDHCPAAFHLQCCNP 85
>gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens]
Length = 634
Score = 66.2 bits (160), Expect = 4e-11
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
+ED C+VCR G+L+ CD C R +HL CL PPL+ IP G W C C
Sbjct: 441 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 486
>gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens]
Length = 680
Score = 66.2 bits (160), Expect = 4e-11
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 98 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
+ED C+VCR G+L+ CD C R +HL CL PPL+ IP G W C C
Sbjct: 487 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 532
>gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens]
Length = 867
Score = 63.5 bits (153), Expect = 3e-10
Identities = 27/49 (55%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 95 CQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
C +N DEC VCRDGGEL CCD C R FH C PP+ E W C C
Sbjct: 686 CMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-EAERTPWNCIFC 733
Score = 33.9 bits (76), Expect = 0.22
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263
C VC DG ++ C C+ FH CH P
Sbjct: 693 CEVCRDGGELFCCDTCSRVFHEDCHIP 719
>gi|134133279 SP140 nuclear body protein-like [Homo sapiens]
Length = 580
Score = 63.5 bits (153), Expect = 3e-10
Identities = 27/49 (55%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 95 CQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
C +N DEC VCRDGGEL CCD C R FH C PP+ E W C C
Sbjct: 399 CMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFC 446
Score = 34.3 bits (77), Expect = 0.17
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSR--PGTGLRCR 276
C VC DG ++ C C+ FH CH P S P + CR
Sbjct: 406 CEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTPWNCIFCR 447
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 63.2 bits (152), Expect = 3e-10
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 99 EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEP 158
+D C VC G+L+CC+ C +HL C+ PPL E+P W+C C+ V V E
Sbjct: 390 DDHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAEI 449
Query: 159 RPQEP 163
+ +P
Sbjct: 450 QKNKP 454
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGV 290
C VC D+L C C+A +H C P P +C C P + V
Sbjct: 393 CRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCV 446
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 63.2 bits (152), Expect = 3e-10
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 99 EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEP 158
+D C VC G+L+CC+ C +HL C+ PPL E+P W+C C+ V V E
Sbjct: 390 DDHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAEI 449
Query: 159 RPQEP 163
+ +P
Sbjct: 450 QKNKP 454
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGV 290
C VC D+L C C+A +H C P P +C C P + V
Sbjct: 393 CRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCV 446
>gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens]
Length = 489
Score = 62.0 bits (149), Expect = 8e-10
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 95 CQKNE----DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
C KNE + CA C+ G L C CP A+HL+CL PPL+ P G W C C Q +++
Sbjct: 302 CWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 361
>gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens]
Length = 531
Score = 62.0 bits (149), Expect = 8e-10
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 95 CQKNE----DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
C KNE + CA C+ G L C CP A+HL+CL PPL+ P G W C C Q +++
Sbjct: 344 CWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 403
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 62.0 bits (149), Expect = 8e-10
Identities = 53/217 (24%), Positives = 81/217 (37%), Gaps = 55/217 (25%)
Query: 92 SC-LCQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGT----WRCSSCLQA 146
SC +C+KN D+ L+ CD C +HL CL PPL +P T W+CS C QA
Sbjct: 727 SCGICKKNHDQHL-------LLLCDTCKLHYHLGCLDPPLTRMPRKTKNSYWQCSECDQA 779
Query: 147 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA 206
+++ + +ET LP G + + +++ P V + +P P
Sbjct: 780 GSSDME--------ADMAMET-LPDGTKRSRRQIKEP---------VKFVPQDVPPEPKK 821
Query: 207 APLPGLDSSALHPLLCVGPEGQQNLAPGAR-------------------CGVC---GDGT 244
P+ + E + P R C C GD
Sbjct: 822 IPIRNTRTRGRKRSFVPEEEKHEERVPRERRQRQSVLQKKPKAEDLRTECATCKGTGDNE 881
Query: 245 DVLRCTHCAAAFHWRCHFPAGTSRP---GTGLRCRSC 278
+++RC C +H+ C P P G G C+ C
Sbjct: 882 NLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQEC 918
Score = 48.9 bits (115), Expect = 7e-06
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 101 ECAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGT---WRCSSCLQATVQEVQPR 154
ECA C+ G+ L+ CD C +H CL PPL++ P T W C C ++ +E +
Sbjct: 870 ECATCKGTGDNENLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQECDSSSSKEDENE 929
Query: 155 AE 156
AE
Sbjct: 930 AE 931
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 60.8 bits (146), Expect = 2e-09
Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 149
C VCR GE LI CD C +AFHL CL P L E+P G W+C +C AT +
Sbjct: 1187 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPATAR 1237
>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
sapiens]
Length = 1379
Score = 58.2 bits (139), Expect = 1e-08
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 146
C +C G E L+ CDGC +H+ CL PPL EIP G WRC C+ A
Sbjct: 260 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMA 307
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 58.2 bits (139), Expect = 1e-08
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 146
C +C G E L+ CDGC +H+ CL PPL EIP G WRC C+ A
Sbjct: 327 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMA 374
>gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [Homo
sapiens]
Length = 1482
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
C VC G E L+ CDGC +H+ CL PPL EIP G WRC C+ A ++
Sbjct: 260 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 311
>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
sapiens]
Length = 1539
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
C VC G E L+ CDGC +H+ CL PPL EIP G WRC C+ A ++
Sbjct: 317 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 368
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
C VC G E L+ CDGC +H+ CL PPL EIP G WRC C+ A ++
Sbjct: 317 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 368
>gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]
Length = 689
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 94 LCQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
L +KN DEC VC GG+L+CC CPR FH C PP+ E W C+ C
Sbjct: 529 LKRKNSDECEVCCQGGQLLCCGTCPRVFHEDCHIPPV-EAKRMLWSCTFC 577
Score = 30.8 bits (68), Expect = 1.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263
C VC G +L C C FH CH P
Sbjct: 537 CEVCCQGGQLLCCGTCPRVFHEDCHIP 563
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,433,046
Number of Sequences: 37866
Number of extensions: 1374772
Number of successful extensions: 8178
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 433
Number of HSP's that attempted gapping in prelim test: 6972
Number of HSP's gapped (non-prelim): 1517
length of query: 348
length of database: 18,247,518
effective HSP length: 103
effective length of query: 245
effective length of database: 14,347,320
effective search space: 3515093400
effective search space used: 3515093400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.