Guide to the Human Genome
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Search of human proteins with 4557293

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
         (348 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]              754   0.0  
gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]              550   e-157
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...    89   6e-18
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...    81   2e-15
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...    79   6e-15
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ...    79   6e-15
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...    79   6e-15
gi|47419911 transcriptional intermediary factor 1 alpha isoform ...    75   9e-14
gi|47419909 transcriptional intermediary factor 1 alpha isoform ...    75   9e-14
gi|209977097 tripartite motif-containing 66 [Homo sapiens]             75   1e-13
gi|74027251 tripartite motif-containing 33 protein isoform beta ...    71   2e-12
gi|74027249 tripartite motif-containing 33 protein isoform alpha...    71   2e-12
gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens]             68   1e-11
gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens]             68   1e-11
gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens]             66   4e-11
gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens]             66   4e-11
gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens]       64   3e-10
gi|134133279 SP140 nuclear body protein-like [Homo sapiens]            64   3e-10
gi|38788260 bromodomain PHD finger transcription factor isoform ...    63   3e-10
gi|38788274 bromodomain PHD finger transcription factor isoform ...    63   3e-10
gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens]           62   8e-10
gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens]            62   8e-10
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]             62   8e-10
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo...    61   2e-09
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H...    58   1e-08
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H...    58   1e-08
gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [H...    58   1e-08
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho...    58   1e-08
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H...    58   1e-08
gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]       58   1e-08

>gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
          Length = 348

 Score =  754 bits (1947), Expect = 0.0
 Identities = 348/348 (100%), Positives = 348/348 (100%)

Query: 1   MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRLGS 60
           MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRLGS
Sbjct: 1   MWLVYSSGAPGTQQPARNRVFFPIGMAPGGVCWRPDGWGTGGQGRISGPGSMGAGQRLGS 60

Query: 61  SGTQRCCWGSCFGKEVALRRVLHPSPVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRA 120
           SGTQRCCWGSCFGKEVALRRVLHPSPVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRA
Sbjct: 61  SGTQRCCWGSCFGKEVALRRVLHPSPVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRA 120

Query: 121 FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEV 180
           FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEV
Sbjct: 121 FHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEV 180

Query: 181 RGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVC 240
           RGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVC
Sbjct: 181 RGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVC 240

Query: 241 GDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAP 300
           GDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAP
Sbjct: 241 GDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAP 300

Query: 301 GPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS 348
           GPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS
Sbjct: 301 GPAKDDTASHEPALHRDDLESLLSEHTFDGILQWAIQSMARPAAPFPS 348


>gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]
          Length = 545

 Score =  550 bits (1418), Expect = e-157
 Identities = 269/322 (83%), Positives = 279/322 (86%), Gaps = 5/322 (1%)

Query: 29  GGVCWRPDGWGTGGQGRISGPGSMGAGQRLGSSGTQRCCWGSCFGKEVAL-RRVLHPSPV 87
           GG  + P  +   G G+     S G    + + G Q    G   G E  L ++   P+P+
Sbjct: 227 GGEFYTPSKFEDSGSGKNKARSSSGPKPLVRAKGAQGAAPG---GGEARLGQQGSVPAPL 283

Query: 88  CMGVSC-LCQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 146
            +     L QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA
Sbjct: 284 ALPSDPQLHQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 343

Query: 147 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA 206
           TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA
Sbjct: 344 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA 403

Query: 207 APLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT 266
           APLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT
Sbjct: 404 APLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT 463

Query: 267 SRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEH 326
           SRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEH
Sbjct: 464 SRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGPAKDDTASHEPALHRDDLESLLSEH 523

Query: 327 TFDGILQWAIQSMARPAAPFPS 348
           TFDGILQWAIQSMARPAAPFPS
Sbjct: 524 TFDGILQWAIQSMARPAAPFPS 545



 Score = 28.9 bits (63), Expect = 7.1
 Identities = 43/153 (28%), Positives = 55/153 (35%), Gaps = 27/153 (17%)

Query: 115 DGCPRAFHLACLSPPLREIPSGT---W-------------RCSSCLQATVQEV---QPRA 155
           +GCP+AFH A LS  L +  +     W             R    L +  ++V   QPR 
Sbjct: 53  EGCPQAFH-ALLSWLLTQDSTAILDFWRVLFKDYNLERYGRLQPILDSFPKDVDLSQPRK 111

Query: 156 EEPRPQEPPVETPLP--PGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLD 213
               P  P    P P  P  R A EE R      L    T      L A P   P    +
Sbjct: 112 GRKPPAVPKALVPPPRLPTKRKASEEARAAAPAALTPRGTASPGSQLKAKPPKKP----E 167

Query: 214 SSALHPLLCVGPEGQQNLAPGARCGVCGDGTDV 246
           SSA    L +G  G Q ++   +  V     DV
Sbjct: 168 SSAEQQRLPLG-NGIQTMSASVQRAVAMSSGDV 199


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
           sapiens]
          Length = 1954

 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 6/101 (5%)

Query: 95  CQKNEDE----CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
           C++ ED+    C VC+DGGEL+CCD CP ++HL CL+PPL EIP+G W C  C    ++ 
Sbjct: 408 CEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKG 467

Query: 151 VQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGM 191
              R    R  EPP   P   GL     E   PP +PL G+
Sbjct: 468 KVQRILHWRWTEPP--APFMVGLPGPDVEPSLPPPKPLEGI 506



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
           ++D C VC+ GGE+I CD CPRA+HL CL P L + P G W C  C +  +Q  +P+ ++
Sbjct: 342 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQ-WEPKDDD 400

Query: 158 PRPQE 162
              +E
Sbjct: 401 DEEEE 405



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVL----- 291
           C VC DG ++L C  C +++H  C  P     P     C  C+       V+ +L     
Sbjct: 419 CRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWT 478

Query: 292 -APSPARLA-PGP 302
             P+P  +  PGP
Sbjct: 479 EPPAPFMVGLPGP 491



 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
           C VC  G +++ C  C  A+H  C  P     P     C  C
Sbjct: 346 CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHC 387


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
           sapiens]
          Length = 1912

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 12/89 (13%)

Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC----LQATVQEV------ 151
           C VC+DGGEL+CCD CP ++H+ CL+PPL EIP+G W C  C    L+  VQ++      
Sbjct: 452 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWG 511

Query: 152 QPRAEEPRPQEPPVE--TPLPPGLRSAGE 178
           QP +  P P+ P  +  TP P  L    E
Sbjct: 512 QPPSPTPVPRPPDADPNTPSPKPLEGRPE 540



 Score = 75.5 bits (184), Expect = 7e-14
 Identities = 61/244 (25%), Positives = 91/244 (37%), Gaps = 66/244 (27%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
           ++D C VC+ GGE+I CD CPRA+H+ CL P + + P G W C  C +   + +Q  A+E
Sbjct: 369 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK---EGIQWEAKE 425

Query: 158 PRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSAAPLPGLDSSAL 217
                            S GEE+    G  L   D      H+                 
Sbjct: 426 D---------------NSEGEEILEEVGGDLEEEDD----HHMEF--------------- 451

Query: 218 HPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRS 277
                              C VC DG ++L C  C +++H  C  P     P     C  
Sbjct: 452 -------------------CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPR 492

Query: 278 CSGDVTPAPVEGVL------APSPARL-APGPAKDDTASHEPALHRDDLESLLSEHTFDG 330
           C+       V+ +L       PSP  +  P  A  +T S +P   R + +  +    + G
Sbjct: 493 CTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGRPERQFFVK---WQG 549

Query: 331 ILQW 334
           +  W
Sbjct: 550 MSYW 553


>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
           [Homo sapiens]
          Length = 2000

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQ 161
           C VC+DGGEL+CCD C  ++H+ CL+PPL +IP+G W C  C    ++    +    R  
Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518

Query: 162 EPPVETPLPPGLRSAGEEVRGPPGEPLAG 190
           EPPV  P P   + A      PP  PL G
Sbjct: 519 EPPVAVPAP---QQADGNPDVPPPRPLQG 544



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 30/65 (46%), Positives = 37/65 (56%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
           ++D C VC+ GGE+I CD CPRA+HL CL P L   P G W C  C +  VQ      EE
Sbjct: 378 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE 437

Query: 158 PRPQE 162
              +E
Sbjct: 438 EYEEE 442



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLA---P 293
           C VC DG ++L C  C +++H  C  P     P     C  C+  V    V+ +L     
Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518

Query: 294 SPARLAPGPAKDD 306
            P    P P + D
Sbjct: 519 EPPVAVPAPQQAD 531



 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
           C VC  G +++ C  C  A+H  C  P     P     C  C
Sbjct: 382 CEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423


>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
           [Homo sapiens]
          Length = 1966

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQ 161
           C VC+DGGEL+CCD C  ++H+ CL+PPL +IP+G W C  C    ++    +    R  
Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518

Query: 162 EPPVETPLPPGLRSAGEEVRGPPGEPLAG 190
           EPPV  P P   + A      PP  PL G
Sbjct: 519 EPPVAVPAP---QQADGNPDVPPPRPLQG 544



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 30/65 (46%), Positives = 37/65 (56%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
           ++D C VC+ GGE+I CD CPRA+HL CL P L   P G W C  C +  VQ      EE
Sbjct: 378 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE 437

Query: 158 PRPQE 162
              +E
Sbjct: 438 EYEEE 442



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLA---P 293
           C VC DG ++L C  C +++H  C  P     P     C  C+  V    V+ +L     
Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 518

Query: 294 SPARLAPGPAKDD 306
            P    P P + D
Sbjct: 519 EPPVAVPAPQQAD 531



 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
           C VC  G +++ C  C  A+H  C  P     P     C  C
Sbjct: 382 CEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
           [Homo sapiens]
          Length = 2059

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 102 CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEPRPQ 161
           C VC+DGGEL+CCD C  ++H+ CL+PPL +IP+G W C  C    ++    +    R  
Sbjct: 518 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 577

Query: 162 EPPVETPLPPGLRSAGEEVRGPPGEPLAG 190
           EPPV  P P   + A      PP  PL G
Sbjct: 578 EPPVAVPAP---QQADGNPDVPPPRPLQG 603



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 30/65 (46%), Positives = 37/65 (56%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
           ++D C VC+ GGE+I CD CPRA+HL CL P L   P G W C  C +  VQ      EE
Sbjct: 437 HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE 496

Query: 158 PRPQE 162
              +E
Sbjct: 497 EYEEE 501



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLA---P 293
           C VC DG ++L C  C +++H  C  P     P     C  C+  V    V+ +L     
Sbjct: 518 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWG 577

Query: 294 SPARLAPGPAKDD 306
            P    P P + D
Sbjct: 578 EPPVAVPAPQQAD 590



 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
           C VC  G +++ C  C  A+H  C  P     P     C  C
Sbjct: 441 CEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 482


>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
           [Homo sapiens]
          Length = 1050

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 30/61 (49%), Positives = 40/61 (65%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
           NED CAVC++GGEL+CC+ CP+ FHL+C  P L   PSG W C+ C   +  EV+   + 
Sbjct: 825 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 884

Query: 158 P 158
           P
Sbjct: 885 P 885



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 212 LDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGT 271
           LD S   PL  VG   +++      C VC +G ++L C  C   FH  CH P  T+ P  
Sbjct: 805 LDPSQKSPLH-VGETRKEDDPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSG 863

Query: 272 GLRCRSCSGDVTPAPVE 288
              C  C  D++   VE
Sbjct: 864 EWICTFCR-DLSKPEVE 879


>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
           [Homo sapiens]
          Length = 1016

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 30/61 (49%), Positives = 40/61 (65%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEE 157
           NED CAVC++GGEL+CC+ CP+ FHL+C  P L   PSG W C+ C   +  EV+   + 
Sbjct: 791 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 850

Query: 158 P 158
           P
Sbjct: 851 P 851



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 212 LDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGT 271
           LD S   PL  VG   +++      C VC +G ++L C  C   FH  CH P  T+ P  
Sbjct: 771 LDPSQKSPLH-VGETRKEDDPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSG 829

Query: 272 GLRCRSCSGDVTPAPVE 288
              C  C  D++   VE
Sbjct: 830 EWICTFCR-DLSKPEVE 845


>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
          Length = 1216

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 97   KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAE 156
            +NED CAVC +GGEL+CCD CP+ FHL+C  P L   P G W C+ C   T  E++   E
Sbjct: 968  ENEDFCAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCE 1027

Query: 157  EPRPQEPPVETPLPPGL 173
                 +P +     PGL
Sbjct: 1028 NACYNQPGMRA--SPGL 1042



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/48 (39%), Positives = 22/48 (45%)

Query: 237  CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 284
            C VC +G ++L C  C   FH  CH PA  S PG    C  C     P
Sbjct: 973  CAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQP 1020


>gi|74027251 tripartite motif-containing 33 protein isoform beta
           [Homo sapiens]
          Length = 1110

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 28/55 (50%), Positives = 36/55 (65%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 152
           NED CAVC++GG+L+CC+ CP+ FHL C  P L   PSG W C+ C      EV+
Sbjct: 886 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVE 940



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 17/42 (40%), Positives = 19/42 (45%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
           C VC +G D+L C  C   FH  CH P   S P     C  C
Sbjct: 890 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 931



 Score = 29.3 bits (64), Expect = 5.5
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 168 PLPPGLRSAGEEVRGPPGEPLAGMDTTLV-YKHLPAPPSAAP--LPGLDSSALHPLLCVG 224
           P P    + G     PPG P + +DT  V  + L +   A P  LP L S  L  L    
Sbjct: 99  PAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL---- 154

Query: 225 PEGQQNLAPGARCGVCGD--GTDVLRCTHC 252
           PE ++ L+     G  GD     V+RC  C
Sbjct: 155 PEPERQLSVPIPGGSNGDIQQVGVIRCPVC 184


>gi|74027249 tripartite motif-containing 33 protein isoform alpha
           [Homo sapiens]
          Length = 1127

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 28/55 (50%), Positives = 36/55 (65%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 152
           NED CAVC++GG+L+CC+ CP+ FHL C  P L   PSG W C+ C      EV+
Sbjct: 886 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVE 940



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 17/42 (40%), Positives = 19/42 (45%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 278
           C VC +G D+L C  C   FH  CH P   S P     C  C
Sbjct: 890 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 931



 Score = 29.3 bits (64), Expect = 5.5
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 168 PLPPGLRSAGEEVRGPPGEPLAGMDTTLV-YKHLPAPPSAAP--LPGLDSSALHPLLCVG 224
           P P    + G     PPG P + +DT  V  + L +   A P  LP L S  L  L    
Sbjct: 99  PAPASAPAPGPSAGPPPGPPASLLDTCAVCQQSLQSRREAEPKLLPCLHSFCLRCL---- 154

Query: 225 PEGQQNLAPGARCGVCGD--GTDVLRCTHC 252
           PE ++ L+     G  GD     V+RC  C
Sbjct: 155 PEPERQLSVPIPGGSNGDIQQVGVIRCPVC 184


>gi|75677357 PHD finger protein 12 isoform 1 [Homo sapiens]
          Length = 1004

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLRE--IPSGTWRCSSC 143
           N D C  C++GG+L+CCD CP AFHL C +PPL E  +P G W C  C
Sbjct: 55  NHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC 102



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 111 LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 148
           LI CD CP  FH+ CL PPL  +P G W C + ++  V
Sbjct: 286 LIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVV 323



 Score = 36.2 bits (82), Expect = 0.045
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263
           C  C +G D+L C HC AAFH +C  P
Sbjct: 59  CDSCKEGGDLLCCDHCPAAFHLQCCNP 85


>gi|30842829 PHD finger protein 12 isoform 2 [Homo sapiens]
          Length = 704

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLRE--IPSGTWRCSSC 143
           N D C  C++GG+L+CCD CP AFHL C +PPL E  +P G W C  C
Sbjct: 55  NHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC 102



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 111 LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 148
           LI CD CP  FH+ CL PPL  +P G W C + ++  V
Sbjct: 286 LIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVV 323



 Score = 36.2 bits (82), Expect = 0.045
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263
           C  C +G D+L C HC AAFH +C  P
Sbjct: 59  CDSCKEGGDLLCCDHCPAAFHLQCCNP 85


>gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens]
          Length = 634

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 25/46 (54%), Positives = 31/46 (67%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
           +ED C+VCR  G+L+ CD C R +HL CL PPL+ IP G W C  C
Sbjct: 441 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 486


>gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens]
          Length = 680

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 25/46 (54%), Positives = 31/46 (67%)

Query: 98  NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
           +ED C+VCR  G+L+ CD C R +HL CL PPL+ IP G W C  C
Sbjct: 487 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 532


>gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens]
          Length = 867

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 27/49 (55%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 95  CQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
           C +N DEC VCRDGGEL CCD C R FH  C  PP+ E     W C  C
Sbjct: 686 CMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-EAERTPWNCIFC 733



 Score = 33.9 bits (76), Expect = 0.22
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263
           C VC DG ++  C  C+  FH  CH P
Sbjct: 693 CEVCRDGGELFCCDTCSRVFHEDCHIP 719


>gi|134133279 SP140 nuclear body protein-like [Homo sapiens]
          Length = 580

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 27/49 (55%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 95  CQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
           C +N DEC VCRDGGEL CCD C R FH  C  PP+ E     W C  C
Sbjct: 399 CMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPV-ESEKTPWNCIFC 446



 Score = 34.3 bits (77), Expect = 0.17
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSR--PGTGLRCR 276
           C VC DG ++  C  C+  FH  CH P   S   P   + CR
Sbjct: 406 CEVCRDGGELFCCDTCSRVFHEDCHIPPVESEKTPWNCIFCR 447


>gi|38788260 bromodomain PHD finger transcription factor isoform 2
           [Homo sapiens]
          Length = 2903

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 99  EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEP 158
           +D C VC   G+L+CC+ C   +HL C+ PPL E+P   W+C  C+   V  V     E 
Sbjct: 390 DDHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAEI 449

Query: 159 RPQEP 163
           +  +P
Sbjct: 450 QKNKP 454



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/54 (29%), Positives = 21/54 (38%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGV 290
           C VC    D+L C  C+A +H  C  P     P    +C  C     P   + V
Sbjct: 393 CRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCV 446


>gi|38788274 bromodomain PHD finger transcription factor isoform 1
           [Homo sapiens]
          Length = 2920

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 99  EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAEEP 158
           +D C VC   G+L+CC+ C   +HL C+ PPL E+P   W+C  C+   V  V     E 
Sbjct: 390 DDHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAEI 449

Query: 159 RPQEP 163
           +  +P
Sbjct: 450 QKNKP 454



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/54 (29%), Positives = 21/54 (38%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGV 290
           C VC    D+L C  C+A +H  C  P     P    +C  C     P   + V
Sbjct: 393 CRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCV 446


>gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens]
          Length = 489

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 95  CQKNE----DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
           C KNE    + CA C+ G  L  C  CP A+HL+CL PPL+  P G W C  C Q  +++
Sbjct: 302 CWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 361


>gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens]
          Length = 531

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 95  CQKNE----DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
           C KNE    + CA C+ G  L  C  CP A+HL+CL PPL+  P G W C  C Q  +++
Sbjct: 344 CWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQKALKK 403


>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
          Length = 948

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 53/217 (24%), Positives = 81/217 (37%), Gaps = 55/217 (25%)

Query: 92  SC-LCQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGT----WRCSSCLQA 146
           SC +C+KN D+         L+ CD C   +HL CL PPL  +P  T    W+CS C QA
Sbjct: 727 SCGICKKNHDQHL-------LLLCDTCKLHYHLGCLDPPLTRMPRKTKNSYWQCSECDQA 779

Query: 147 TVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEVRGPPGEPLAGMDTTLVYKHLPAPPSA 206
              +++         +  +ET LP G + +  +++ P            V + +P  P  
Sbjct: 780 GSSDME--------ADMAMET-LPDGTKRSRRQIKEP---------VKFVPQDVPPEPKK 821

Query: 207 APLPGLDSSALHPLLCVGPEGQQNLAPGAR-------------------CGVC---GDGT 244
            P+    +           E  +   P  R                   C  C   GD  
Sbjct: 822 IPIRNTRTRGRKRSFVPEEEKHEERVPRERRQRQSVLQKKPKAEDLRTECATCKGTGDNE 881

Query: 245 DVLRCTHCAAAFHWRCHFPAGTSRP---GTGLRCRSC 278
           +++RC  C   +H+ C  P     P   G G  C+ C
Sbjct: 882 NLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQEC 918



 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 101 ECAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGT---WRCSSCLQATVQEVQPR 154
           ECA C+  G+   L+ CD C   +H  CL PPL++ P  T   W C  C  ++ +E +  
Sbjct: 870 ECATCKGTGDNENLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQECDSSSSKEDENE 929

Query: 155 AE 156
           AE
Sbjct: 930 AE 931


>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
            sapiens]
          Length = 1483

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 102  CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 149
            C VCR  GE   LI CD C +AFHL CL P L E+P G W+C +C  AT +
Sbjct: 1187 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPATAR 1237


>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
           sapiens]
          Length = 1379

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 146
           C +C  G E   L+ CDGC   +H+ CL PPL EIP G WRC  C+ A
Sbjct: 260 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMA 307


>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
           sapiens]
          Length = 1560

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 146
           C +C  G E   L+ CDGC   +H+ CL PPL EIP G WRC  C+ A
Sbjct: 327 CRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMA 374


>gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [Homo
           sapiens]
          Length = 1482

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
           C VC  G E   L+ CDGC   +H+ CL PPL EIP G WRC  C+ A  ++
Sbjct: 260 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 311


>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
           sapiens]
          Length = 1539

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
           C VC  G E   L+ CDGC   +H+ CL PPL EIP G WRC  C+ A  ++
Sbjct: 317 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 368


>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
           sapiens]
          Length = 1570

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 102 CAVCRDGGE---LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 150
           C VC  G E   L+ CDGC   +H+ CL PPL EIP G WRC  C+ A  ++
Sbjct: 317 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ 368


>gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]
          Length = 689

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 94  LCQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 143
           L +KN DEC VC  GG+L+CC  CPR FH  C  PP+ E     W C+ C
Sbjct: 529 LKRKNSDECEVCCQGGQLLCCGTCPRVFHEDCHIPPV-EAKRMLWSCTFC 577



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 237 CGVCGDGTDVLRCTHCAAAFHWRCHFP 263
           C VC  G  +L C  C   FH  CH P
Sbjct: 537 CEVCCQGGQLLCCGTCPRVFHEDCHIP 563


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,433,046
Number of Sequences: 37866
Number of extensions: 1374772
Number of successful extensions: 8178
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 433
Number of HSP's that attempted gapping in prelim test: 6972
Number of HSP's gapped (non-prelim): 1517
length of query: 348
length of database: 18,247,518
effective HSP length: 103
effective length of query: 245
effective length of database: 14,347,320
effective search space: 3515093400
effective search space used: 3515093400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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