Guide to the Human Genome
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Name: FBXO38 Sequence: fasta or formatted (1113aa) NCBI GI: 45505155
Description:

F-box protein 38 isoform a

Referenced in:

Cullins and SCF Complexes

Other entries for this name:
alt prot [1188aa] F-box protein 38 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         60           2
 C cysteine            2.9         32           3
 D aspartate           5.8         65           2
 E glutamate           8.0         89           2
 F phenylalanine       3.1         35           2
 G glycine             5.2         58           2
 H histidine           3.1         34           3
 I isoleucine          5.4         60           2
 K lysine              5.4         60           3
 L leucine             8.2         91           2
 M methionine          3.0         33           2
 N asparagine          5.0         56           3
 P proline             6.0         67           2
 Q glutamine           4.0         44           2
 R arginine            6.3         70           3
 S serine              7.5         84           3
 T threonine           4.5         50           2
 V valine              7.5         83           2
 W tryptophan          1.0         11           2
 Y tyrosine            2.8         31           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   F-box protein 38 isoform a 
FBXO38                0.921   F-box protein 38 isoform b 
DSPP                  0.014   dentin sialophosphoprotein preproprotein 
NOLC1                 0.011   nucleolar and coiled-body phosphoprotein 1 
HRC                   0.007   histidine rich calcium binding protein precursor [Hom...
PPP4R2                0.007   protein phosphatase 4, regulatory subunit 2 
SLTM                  0.007   modulator of estrogen induced transcription isoform ...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform c ...
DMP1                  0.006   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.006   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
AFF4                  0.006   ALL1 fused gene from 5q31 
PNN                   0.006   pinin, desmosome associated protein 
CCDC34                0.005   coiled-coil domain containing 34 isoform 1 
SRRM2                 0.005   splicing coactivator subunit SRm300 
C6orf10               0.005   chromosome 6 open reading frame 10 
NAP5                  0.005   Nck-associated protein 5 isoform 1 
MLLT1                 0.005   myeloid/lymphoid or mixed-lineage leukemia (trithora...
LOC729815             0.005   PREDICTED: hypothetical protein 
SR140                 0.005   U2-associated SR140 protein 
ARID4B                0.005   AT rich interactive domain 4B isoform 2 
ARID4B                0.005   AT rich interactive domain 4B isoform 1 
LRRC29                0.005   F-box and leucine-rich repeat protein 9 
LRRC29                0.005   F-box and leucine-rich repeat protein 9 
TJP1                  0.004   tight junction protein 1 isoform b 
TJP1                  0.004   tight junction protein 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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