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Search of human proteins with 4507401
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507401 transcription factor A, mitochondrial [Homo sapiens]
(246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507401 transcription factor A, mitochondrial [Homo sapiens] 499 e-142
gi|221136785 upstream binding transcription factor, RNA polymera... 77 1e-14
gi|239741668 PREDICTED: upstream binding transcription factor, R... 72 6e-13
gi|169163306 PREDICTED: upstream binding transcription factor, R... 72 6e-13
gi|115529449 upstream binding transcription factor, RNA polymera... 69 3e-12
gi|115529451 upstream binding transcription factor, RNA polymera... 69 3e-12
gi|7657671 upstream binding transcription factor, RNA polymerase... 69 5e-12
gi|239747816 PREDICTED: upstream binding transcription factor, R... 66 3e-11
gi|239753269 PREDICTED: upstream binding transcription factor, R... 65 4e-11
gi|239741686 PREDICTED: upstream binding transcription factor, R... 65 4e-11
gi|4504425 high-mobility group box 1 [Homo sapiens] 57 1e-08
gi|71143137 high-mobility group box 3 [Homo sapiens] 54 2e-07
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 53 2e-07
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 53 2e-07
gi|57232750 HMG2 like isoform 1 [Homo sapiens] 53 3e-07
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re... 52 5e-07
gi|83715964 high-mobility group 20B [Homo sapiens] 51 1e-06
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 50 1e-06
gi|194688135 high-mobility group box 2 [Homo sapiens] 50 2e-06
gi|194688133 high-mobility group box 2 [Homo sapiens] 50 2e-06
gi|11321591 high-mobility group box 2 [Homo sapiens] 50 2e-06
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 49 4e-06
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 49 4e-06
gi|8922633 high-mobility group 20A [Homo sapiens] 48 7e-06
gi|189458896 postmeiotic segregation 1 isoform b [Homo sapiens] 48 9e-06
gi|4505911 postmeiotic segregation 1 isoform a [Homo sapiens] 48 9e-06
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 47 2e-05
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 47 2e-05
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 47 2e-05
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] 47 2e-05
>gi|4507401 transcription factor A, mitochondrial [Homo sapiens]
Length = 246
Score = 499 bits (1286), Expect = e-142
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF 60
MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
Sbjct: 1 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF 60
Query: 61 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 120
SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
Sbjct: 61 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 120
Query: 121 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE 180
LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
Sbjct: 121 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE 180
Query: 181 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK 240
KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
Sbjct: 181 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK 240
Query: 241 YGAEEC 246
YGAEEC
Sbjct: 241 YGAEEC 246
>gi|221136785 upstream binding transcription factor, RNA polymerase
I-like 1 [Homo sapiens]
Length = 393
Score = 77.0 bits (188), Expect = 1e-14
Identities = 46/189 (24%), Positives = 97/189 (51%), Gaps = 21/189 (11%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PK+P+++Y RF KE P + P ++ EL + +++++RELP+ K+ Y +R E Q
Sbjct: 100 PKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQE 159
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTK-----------------KKELTLL 152
++E+++RF+E+ P + +K + K + K K K++
Sbjct: 160 FEEKLARFREE-HPDLVQKAKKSSVSKRTQNKVQKKFQKNIEEVRSLPKTDRFFKKVKFH 218
Query: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209
G+P K P + Y+ + + + +E + S +E++ + W+ + S+K+ + A+E +
Sbjct: 219 GEPQKPPMNGYHKFHQDSWSSKEMQHLSVRERMVEIGRRWQRIPQSQKDHFKSQAEELQK 278
Query: 210 RYHNEMKSW 218
+Y ++ W
Sbjct: 279 QYKVKLDLW 287
Score = 35.4 bits (80), Expect = 0.046
Identities = 38/177 (21%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Query: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
K P++ Y +F ++ + Q+ + E + I +RW+ +P S+K ++ + Y
Sbjct: 223 KPPMNGYHKFHQDSWSSKEMQHLSVR--ERMVEIGRRWQRIPQSQKDHFKSQAEELQKQY 280
Query: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERF 170
K ++ + + L+P + ++ K K AMT + L K P+S+ + E F
Sbjct: 281 KVKLDLWLKTLSPENYAAYKESTYAKG-KNMAMTGGPDPRL--KQADPQSSSAKGLQEGF 337
Query: 171 QEAKG--DSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEV 225
E +G + + +T+ N ++S +E + +++E+ ++ S EE ++V
Sbjct: 338 GEGQGLQAAGTDSSQTIWVNC-HVSMEPEENRKKDREKEESSNSSDCSSGEEIEVDV 393
>gi|239741668 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 3 [Homo sapiens]
Length = 457
Score = 71.6 bits (174), Expect = 6e-13
Identities = 45/189 (23%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PK+P+++Y+RF KE P + P ++ EL + ++++++ELP+ K+ Y ++ E Q
Sbjct: 164 PKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQE 223
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK-----------------KELTLL 152
++E++ RF+E+ P +K + K ++ K K K++
Sbjct: 224 FEEKLVRFREE-HPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFH 282
Query: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209
G+P K P + Y+ + + + +E + S +E++ + W+ + S+K+ Y A+ +
Sbjct: 283 GEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQK 342
Query: 210 RYHNEMKSW 218
Y E+ W
Sbjct: 343 EYKVELDLW 351
Score = 38.1 bits (87), Expect = 0.007
Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
K P++ Y +F ++ + Q+ + E + I +RW+ +P S+K Y+ + Y
Sbjct: 287 KPPMNGYHKFHQDSWSSKELQHLSLR--ERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 344
Query: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKP------KRPRSAYNV 164
K E+ + + L+P + K K K + ++G P P+S+
Sbjct: 345 KVELDLWLKTLSPEDYAA---------YKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAK 395
Query: 165 YVAERFQEAKG--DSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 222
+ E F E +G + E +T+ N + +S +E + +E+E+ + S E+
Sbjct: 396 GLQEGFGEGQGLQAAGTEASQTIWVNCQ-VSMEPEENRKKDGEEEESSNSLDCSSGEDME 454
Query: 223 IEV 225
++V
Sbjct: 455 VDV 457
>gi|169163306 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 5 [Homo sapiens]
Length = 471
Score = 71.6 bits (174), Expect = 6e-13
Identities = 45/189 (23%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PK+P+++Y+RF KE P + P ++ EL + ++++++ELP+ K+ Y ++ E Q
Sbjct: 178 PKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKELPEQMKQKYIQDFQKEKQE 237
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK-----------------KELTLL 152
++E++ RF+E+ P +K + K ++ K K K++
Sbjct: 238 FEEKLVRFREE-HPDLDQKGKKSDISKRIQTKVQKKVQKNIEEVTSLPKTDQFFKKVKFH 296
Query: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209
G+P K P + Y+ + + + +E + S +E++ + W+ + S+K+ Y A+ +
Sbjct: 297 GEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQK 356
Query: 210 RYHNEMKSW 218
Y E+ W
Sbjct: 357 EYKVELDLW 365
Score = 38.1 bits (87), Expect = 0.007
Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
K P++ Y +F ++ + Q+ + E + I +RW+ +P S+K Y+ + Y
Sbjct: 301 KPPMNGYHKFHQDSWSSKELQHLSLR--ERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 358
Query: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKP------KRPRSAYNV 164
K E+ + + L+P + K K K + ++G P P+S+
Sbjct: 359 KVELDLWLKTLSPEDYAA---------YKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAK 409
Query: 165 YVAERFQEAKG--DSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 222
+ E F E +G + E +T+ N + +S +E + +E+E+ + S E+
Sbjct: 410 GLQEGFGEGQGLQAAGTEASQTIWVNCQ-VSMEPEENRKKDGEEEESSNSLDCSSGEDME 468
Query: 223 IEV 225
++V
Sbjct: 469 VDV 471
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 69.3 bits (168), Expect = 3e-12
Identities = 57/253 (22%), Positives = 107/253 (42%), Gaps = 58/253 (22%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PKKP++ Y RF E+ + +P+ +L + ++++++ELP+ KK Y ++ E Q
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 171
Query: 110 YKEEISRFKEQ-----------------LTPSQIM--------------SLEKEIMDKH- 137
++ ++RF+E TP Q+ + ++ + KH
Sbjct: 172 FERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHP 231
Query: 138 ---LKRKAMTK----KKELTLL----GKP-KRPRSAYNVYVAERFQEAKGDSPQEKLKTV 185
+ + +TK K E L G+P K P ++Y++Y AE K E++
Sbjct: 232 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLC 291
Query: 186 KENWKNLSDSEKELYIQHAKEDETRYHNEMKSW--------------EEQMIEVGRKDLL 231
+ WK LS EK+ Y + + + Y E+ + EE+M+ + +K
Sbjct: 292 SQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQAT 351
Query: 232 RRTIKKQRKYGAE 244
KK + G +
Sbjct: 352 SPASKKPAQEGGK 364
Score = 55.1 bits (131), Expect = 6e-08
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PK+PVS+ FS+E+ + + P+ +EL R +A+ W +L + KK Y+
Sbjct: 370 PKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYK--------- 420
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAER 169
+ E + + ++ +++ L PKR + V
Sbjct: 421 ------------------AREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVIGD 462
Query: 170 FQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 215
+ + + LK ++ W N+ EK ++I+ A ED+ RY E+
Sbjct: 463 YLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYEREL 508
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 50 PKKP-VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQ 108
PKKP ++ Y +FS+E L + + K E + I RW+ + S+K+ Y+ + +
Sbjct: 530 PKKPPMNGYQKFSQELLSNGELNHLPLK--ERMVEIGSRWQRISQSQKEHYKKLAEEQQK 587
Query: 109 VYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAY--NVYV 166
YK + + + L+P + ++ I + KRK+MTK + PK R+
Sbjct: 588 QYKVHLDLWVKSLSPQDRAAYKEYISN---KRKSMTKLRG----PNPKSSRTTLQSKSES 640
Query: 167 AERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 220
E +E + D +++ + EN + D + + EDE+ +E + +E
Sbjct: 641 EEDDEEDEDDEDEDEEEEDDENGDSSEDGGDS--SESSSEDESEDGDENEEDDE 692
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 69.3 bits (168), Expect = 3e-12
Identities = 57/253 (22%), Positives = 107/253 (42%), Gaps = 58/253 (22%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PKKP++ Y RF E+ + +P+ +L + ++++++ELP+ KK Y ++ E Q
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 171
Query: 110 YKEEISRFKEQ-----------------LTPSQIM--------------SLEKEIMDKH- 137
++ ++RF+E TP Q+ + ++ + KH
Sbjct: 172 FERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIMRDYIQKHP 231
Query: 138 ---LKRKAMTK----KKELTLL----GKP-KRPRSAYNVYVAERFQEAKGDSPQEKLKTV 185
+ + +TK K E L G+P K P ++Y++Y AE K E++
Sbjct: 232 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLC 291
Query: 186 KENWKNLSDSEKELYIQHAKEDETRYHNEMKSW--------------EEQMIEVGRKDLL 231
+ WK LS EK+ Y + + + Y E+ + EE+M+ + +K
Sbjct: 292 SQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQAT 351
Query: 232 RRTIKKQRKYGAE 244
KK + G +
Sbjct: 352 SPASKKPAQEGGK 364
Score = 55.1 bits (131), Expect = 6e-08
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PK+PVS+ FS+E+ + + P+ +EL R +A+ W +L + KK Y+
Sbjct: 370 PKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYK--------- 420
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAER 169
+ E + + ++ +++ L PKR + V
Sbjct: 421 ------------------AREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVIGD 462
Query: 170 FQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 215
+ + + LK ++ W N+ EK ++I+ A ED+ RY E+
Sbjct: 463 YLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYEREL 508
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 50 PKKP-VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQ 108
PKKP ++ Y +FS+E L + + K E + I RW+ + S+K+ Y+ + +
Sbjct: 530 PKKPPMNGYQKFSQELLSNGELNHLPLK--ERMVEIGSRWQRISQSQKEHYKKLAEEQQK 587
Query: 109 VYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAY--NVYV 166
YK + + + L+P + ++ I + KRK+MTK + PK R+
Sbjct: 588 QYKVHLDLWVKSLSPQDRAAYKEYISN---KRKSMTKLRG----PNPKSSRTTLQSKSES 640
Query: 167 AERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 220
E +E + D +++ + EN + D + + EDE+ +E + +E
Sbjct: 641 EEDDEEDEDDEDEDEEEEDDENGDSSEDGGDS--SESSSEDESEDGDENEEDDE 692
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 68.6 bits (166), Expect = 5e-12
Identities = 41/194 (21%), Positives = 94/194 (48%), Gaps = 21/194 (10%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PKKP++ Y RF E+ + +P+ +L + ++++++ELP+ KK Y ++ E Q
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQE 171
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAER 169
++ ++RF+E P I + +K + + KPK P+ + + +
Sbjct: 172 FERNLARFRED-HPDLIQNAKKSDIPE-----------------KPKTPQQLWYTHEKKV 213
Query: 170 FQEAKGDSPQEKLK-TVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW--EEQMIEVG 226
+ + + D+ +++K ++ + W LSD ++ +I A E Y M+ + + + +
Sbjct: 214 YLKVRPDATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHPELNIS 273
Query: 227 RKDLLRRTIKKQRK 240
+ + + T+ K +
Sbjct: 274 EEGITKSTLTKAER 287
Score = 58.9 bits (141), Expect = 4e-09
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 19/210 (9%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
P+KP + + + ++ PDA T E+ + ++W +L D K+ + + +
Sbjct: 196 PEKPKTPQQLWYTHEKKVYLKVRPDATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQRKE 255
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKP-KRPRSAYNVYVAE 168
Y EEI R Q P +++ +E + K KA + K+ G+P K P ++Y++Y AE
Sbjct: 256 Y-EEIMRDYIQKHPE--LNISEEGITKSTLTKAERQLKD-KFDGRPTKPPPNSYSLYCAE 311
Query: 169 RFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW---------- 218
K E++ + WK LS EK+ Y + + + Y E+ +
Sbjct: 312 LMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQ 371
Query: 219 ----EEQMIEVGRKDLLRRTIKKQRKYGAE 244
EE+M+ + +K KK + G +
Sbjct: 372 RVLGEEKMLNINKKQATSPASKKPAQEGGK 401
Score = 55.1 bits (131), Expect = 6e-08
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PK+PVS+ FS+E+ + + P+ +EL R +A+ W +L + KK Y+
Sbjct: 407 PKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYK--------- 457
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAER 169
+ E + + ++ +++ L PKR + V
Sbjct: 458 ------------------AREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVIGD 499
Query: 170 FQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 215
+ + + LK ++ W N+ EK ++I+ A ED+ RY E+
Sbjct: 500 YLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYEREL 545
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 50 PKKP-VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQ 108
PKKP ++ Y +FS+E L + + K E + I RW+ + S+K+ Y+ + +
Sbjct: 567 PKKPPMNGYQKFSQELLSNGELNHLPLK--ERMVEIGSRWQRISQSQKEHYKKLAEEQQK 624
Query: 109 VYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAY--NVYV 166
YK + + + L+P + ++ I + KRK+MTK + PK R+
Sbjct: 625 QYKVHLDLWVKSLSPQDRAAYKEYISN---KRKSMTKLRG----PNPKSSRTTLQSKSES 677
Query: 167 AERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 220
E +E + D +++ + EN + D + + EDE+ +E + +E
Sbjct: 678 EEDDEEDEDDEDEDEEEEDDENGDSSEDGGDS--SESSSEDESEDGDENEEDDE 729
>gi|239747816 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 65.9 bits (159), Expect = 3e-11
Identities = 43/189 (22%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PK+ +++Y+RF KE P + P ++ E+ + ++++++ELP+ K+ + +R E Q
Sbjct: 107 PKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQE 166
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK-----------------KELTLL 152
++E+++RF+E+ P +K + K ++ K K K++
Sbjct: 167 FEEKLARFREE-HPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFH 225
Query: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209
G+P K P + Y+ + + + +E + S +E++ + W+ + S+K+ Y A+ +
Sbjct: 226 GEPQKPPMNGYHKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQK 285
Query: 210 RYHNEMKSW 218
Y E+ W
Sbjct: 286 EYKVELDLW 294
Score = 38.1 bits (87), Expect = 0.007
Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
K P++ Y +F ++ + Q+ + E + I +RW+ +P S+K Y+ + Y
Sbjct: 230 KPPMNGYHKFHQDSWSSKELQHLSLR--ERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 287
Query: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKP------KRPRSAYNV 164
K E+ + + L+P + K K K + ++G P P+S+
Sbjct: 288 KVELDLWLKTLSPEDYAA---------YKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAK 338
Query: 165 YVAERFQEAKG--DSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 222
+ E F E +G + E +T+ N + +S +E + +E+E+ + S E+
Sbjct: 339 GLQEGFGEGQGLQAAGTEASQTIWVNCQ-VSMEPEENRKKDGEEEESSNSLDCSSGEDME 397
Query: 223 IEV 225
++V
Sbjct: 398 VDV 400
>gi|239753269 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 65.5 bits (158), Expect = 4e-11
Identities = 43/189 (22%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PK+ +++Y+RF KE P + P ++ E+ + ++++++ELP+ K+ + +R E Q
Sbjct: 107 PKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQE 166
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK-----------------KELTLL 152
++E+++RF+E+ P +K + K ++ K K K++
Sbjct: 167 FEEKLARFREE-HPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFH 225
Query: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209
G+P K P + Y + + + +E + S +E++ + W+ + S+K+ Y A+ +
Sbjct: 226 GEPQKPPMNGYQKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQK 285
Query: 210 RYHNEMKSW 218
Y E+ W
Sbjct: 286 EYKVELDLW 294
Score = 37.4 bits (85), Expect = 0.012
Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
K P++ Y +F ++ + Q+ + E + I +RW+ +P S+K Y+ + Y
Sbjct: 230 KPPMNGYQKFHQDSWSSKELQHLSLR--ERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 287
Query: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKP------KRPRSAYNV 164
K E+ + + L+P + K K K + ++G P P+S+
Sbjct: 288 KVELDLWLKTLSPEDYAA---------YKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAK 338
Query: 165 YVAERFQEAKG--DSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 222
+ E F E +G + E +T+ N + +S ++ + +E+E+ + S E+
Sbjct: 339 GLQEGFGEGQGLQAAGTEASQTIWVNCQ-VSMEPEDNRKKDGEEEESSNSLDCSSGEDME 397
Query: 223 IEV 225
++V
Sbjct: 398 VDV 400
>gi|239741686 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 65.5 bits (158), Expect = 4e-11
Identities = 43/189 (22%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
PK+ +++Y+RF KE P + P ++ E+ + ++++++ELP+ K+ + +R E Q
Sbjct: 107 PKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKEKQE 166
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK-----------------KELTLL 152
++E+++RF+E+ P +K + K ++ K K K++
Sbjct: 167 FEEKLARFREE-HPDLDQKGKKSDICKRVQTKVQKKVQKNIEEVRSLPKTDQFFKKVKFH 225
Query: 153 GKP-KRPRSAYNVYVAERF--QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDET 209
G+P K P + Y + + + +E + S +E++ + W+ + S+K+ Y A+ +
Sbjct: 226 GEPQKPPMNGYQKFHQDSWSSKELQHLSLRERMVEIGRRWQRIPQSQKDHYKSQAELLQK 285
Query: 210 RYHNEMKSW 218
Y E+ W
Sbjct: 286 EYKVELDLW 294
Score = 37.4 bits (85), Expect = 0.012
Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
K P++ Y +F ++ + Q+ + E + I +RW+ +P S+K Y+ + Y
Sbjct: 230 KPPMNGYQKFHQDSWSSKELQHLSLR--ERMVEIGRRWQRIPQSQKDHYKSQAELLQKEY 287
Query: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKP------KRPRSAYNV 164
K E+ + + L+P + K K K + ++G P P+S+
Sbjct: 288 KVELDLWLKTLSPEDYAA---------YKESTYAKGKNMAMMGGPAPSLKQTDPQSSSAK 338
Query: 165 YVAERFQEAKG--DSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 222
+ E F E +G + E +T+ N + +S ++ + +E+E+ + S E+
Sbjct: 339 GLQEGFGEGQGLQAAGTEASQTIWVNCQ-VSMEPEDNRKKDGEEEESSNSLDCSSGEDME 397
Query: 223 IEV 225
++V
Sbjct: 398 VDV 400
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 57.4 bits (137), Expect = 1e-08
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 34/200 (17%)
Query: 50 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 104
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 105 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 164
A+ Y+ E M ++ K TKKK PKRP SA+ +
Sbjct: 66 ADKARYERE--------------------MKTYIPPKGETKKK-FKDPNAPKRPPSAFFL 104
Query: 165 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 220
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct: 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
Query: 221 QMIEVGRKDLLRRTIKKQRK 240
+ G+ D ++ + K K
Sbjct: 165 K----GKPDAAKKGVVKAEK 180
Score = 42.4 bits (98), Expect = 4e-04
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 153 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 203
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 204 AKEDETRYHNEMKSW 218
AK D+ RY EMK++
Sbjct: 64 AKADKARYEREMKTY 78
Score = 37.4 bits (85), Expect = 0.012
Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
Query: 108 QVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKE 148
+ Y+++I+ ++ + P + +K + +K + KKKE
Sbjct: 153 EKYEKDIAAYRAKGKPD---AAKKGV----VKAEKSKKKKE 186
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 53.5 bits (127), Expect = 2e-07
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 50 PKKP---VSSYLRFSKEQLPIFKAQNPDAKTT--ELIRRIAQRWRELPDSKKKIYQDAYR 104
PKKP +S+Y F + K +NP+ E ++ ++RW+ + +K + + +
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 65
Query: 105 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 164
A+ Y E M + K KKK+ PKRP S + +
Sbjct: 66 ADKVRYDRE--------------------MKDYGPAKGGKKKKDPNA---PKRPPSGFFL 102
Query: 165 YVAERFQEAKGDSPQEKL----KTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 220
+ +E + K +P + K + E W NL+DSEK+ YI A + + +Y ++ ++
Sbjct: 103 FCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKS 162
Query: 221 QMIEVGRKDLLRRTIKKQRKYGAEE 245
+ G+ D + K RK EE
Sbjct: 163 K----GKFDGAKGPAKVARKKVEEE 183
Score = 45.1 bits (105), Expect = 6e-05
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 153 GKPKRPR---SAYNVYVAERFQEAKGDSPQ------EKLKTVKENWKNLSDSEKELYIQH 203
G PK+P+ SAY +V +E K +P+ E K E WK +S EK + +
Sbjct: 4 GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEM 63
Query: 204 AKEDETRYHNEMKSW 218
AK D+ RY EMK +
Sbjct: 64 AKADKVRYDREMKDY 78
Score = 42.0 bits (97), Expect = 5e-04
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
+ PK+P S + F E P K+ NP ++ +++ + W L DS+K+ Y
Sbjct: 91 NAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLK 150
Query: 108 QVYKEEISRFKEQ 120
+ Y+++++ +K +
Sbjct: 151 EKYEKDVADYKSK 163
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 53.1 bits (126), Expect = 2e-07
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 37/205 (18%)
Query: 50 PKKP---VSSYLRFSKEQLPIFKAQNPDAKTT--ELIRRIAQRWRELPDSKKKIYQDAYR 104
PKKP +S+Y F + K +NP E ++ ++RW+ + +K + + +
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAK 65
Query: 105 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 164
A+ Y +EI + K KK PKRP S + +
Sbjct: 66 ADKVHYDQEIKDYGPA--------------------KGGKKKDP----NAPKRPPSGFFL 101
Query: 165 YVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 220
+ +E ++K +P + K + E WKNL+DSEK+ YI A + + +Y ++ ++
Sbjct: 102 FCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKS 161
Query: 221 QMIEVGRKDLLRRTIKKQRKYGAEE 245
+ G+ D + K +K EE
Sbjct: 162 K----GKSDGAKGPAKVAQKKVEEE 182
Score = 41.6 bits (96), Expect = 6e-04
Identities = 18/73 (24%), Positives = 39/73 (53%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
+ PK+P S + F E P K+ NP ++ +++ + W+ L DS+K+ Y
Sbjct: 90 NAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLK 149
Query: 108 QVYKEEISRFKEQ 120
+ Y+++++ +K +
Sbjct: 150 EKYEKDVAVYKSK 162
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 53.1 bits (126), Expect = 2e-07
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 37/205 (18%)
Query: 50 PKKP---VSSYLRFSKEQLPIFKAQNPDAKTT--ELIRRIAQRWRELPDSKKKIYQDAYR 104
PKKP +S+Y F + K +NP E ++ ++RW+ + +K + + +
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAK 65
Query: 105 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 164
A+ Y +EI + K KK PKRP S + +
Sbjct: 66 ADKVHYDQEIKDYGPA--------------------KGGKKKDP----NAPKRPPSGFFL 101
Query: 165 YVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 220
+ +E ++K +P + K + E WKNL+DSEK+ YI A + + +Y ++ ++
Sbjct: 102 FCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKS 161
Query: 221 QMIEVGRKDLLRRTIKKQRKYGAEE 245
+ G+ D + K +K EE
Sbjct: 162 K----GKSDGAKGPAKVAQKKVEEE 182
Score = 41.6 bits (96), Expect = 6e-04
Identities = 18/73 (24%), Positives = 39/73 (53%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
+ PK+P S + F E P K+ NP ++ +++ + W+ L DS+K+ Y
Sbjct: 90 NAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLK 149
Query: 108 QVYKEEISRFKEQ 120
+ Y+++++ +K +
Sbjct: 150 EKYEKDVAVYKSK 162
>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
Length = 186
Score = 52.8 bits (125), Expect = 3e-07
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
PK VSSY+ F FK Q P+ E R+ +++WR + +K Y+ + +
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 108 QVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVA 167
Y+EE+ + + K KR+ + +P+RP S++ ++
Sbjct: 69 ARYQEEMMNY----------------VGKRKKRRKRDPQ-------EPRRPPSSFLLFCQ 105
Query: 168 ERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 221
+ + + K ++P + K + W +D EK Y Q +Y E++ + +Q
Sbjct: 106 DHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQ 163
Score = 35.4 bits (80), Expect = 0.046
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 21/105 (20%)
Query: 147 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP------QEKLKTVKENWKNLSDSEKELY 200
KE+ L KPK S+Y ++ + K P +E + E W+++S EK Y
Sbjct: 3 KEIQL--KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 201 IQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEE 245
AK D+ RY EM ++ VG++ KK+RK +E
Sbjct: 61 EALAKLDKARYQEEMMNY------VGKR-------KKRRKRDPQE 92
>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin e1 [Homo sapiens]
Length = 411
Score = 52.0 bits (123), Expect = 5e-07
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
P KP+ Y+R+S++ KA NPD K E+ + I WR+L D +K+ Y + Y AE
Sbjct: 66 PDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIE 125
Query: 110 YKEEISRF 117
Y E + +
Sbjct: 126 YNESMKAY 133
Score = 38.1 bits (87), Expect = 0.007
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 155 PKRPRSAYNVYVAERFQEAKGDSPQEKL----KTVKENWKNLSDSEKELYIQHAKEDETR 210
P +P Y Y + + + K +P KL K + W++L+D EK+ Y+ + ++
Sbjct: 66 PDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIE 125
Query: 211 YHNEMKSW 218
Y+ MK++
Sbjct: 126 YNESMKAY 133
>gi|83715964 high-mobility group 20B [Homo sapiens]
Length = 317
Score = 50.8 bits (120), Expect = 1e-06
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 45 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYR 104
+L + PK PV+ Y+RF E+ + ++PD E+ + + W +L ++K+ Y D
Sbjct: 65 ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
Query: 105 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPK 156
E Q Y +E+ + Q + + M EK I +K +K++ + TLL K
Sbjct: 125 REKQQYMKELRAY--QQSEAYKMCTEK-IQEKKIKKEDSSSGLMNTLLNGHK 173
Score = 41.6 bits (96), Expect = 6e-04
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 145 KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELY 200
KK++ L PK P + Y ++ ER ++ + P E K + W L +EK+ Y
Sbjct: 60 KKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRY 119
Query: 201 IQHAKEDETRYHNEMKSWEE-QMIEVGRKDLLRRTIKKQ 238
+ A+ ++ +Y E++++++ + ++ + + + IKK+
Sbjct: 120 LDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKE 158
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 50.4 bits (119), Expect = 1e-06
Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 31/206 (15%)
Query: 50 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 104
PKKP +SSY F + K ++ DA +E + ++RW+ + +K ++D +
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMAK 65
Query: 105 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 164
A+ Y+ + M ++ K TKKK PKRP SA+ +
Sbjct: 66 ADKTHYERQ--------------------MKTYIPPKGETKKK-FKDPNAPKRPPSAFFL 104
Query: 165 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 220
+ +E + KG+ P + K + E W N + +K+ + A + + +Y ++ +++
Sbjct: 105 FCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQA 164
Query: 221 Q-MIEVGRKDLLRRTIKKQRKYGAEE 245
+ E +K +++ K++K E+
Sbjct: 165 KGKPEAAKKGVVKAEKSKKKKEEEED 190
Score = 36.6 bits (83), Expect = 0.021
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 153 GKPKRPR---SAYNVYVA---ERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQH 203
G PK+PR S+Y +V E ++ D+ E E WK +S EK +
Sbjct: 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDM 63
Query: 204 AKEDETRYHNEMKSW 218
AK D+T Y +MK++
Sbjct: 64 AKADKTHYERQMKTY 78
Score = 33.1 bits (74), Expect = 0.23
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
+ PK+P S++ F E P K ++P ++ +++ + W K
Sbjct: 93 NAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK----------- 141
Query: 108 QVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVA 167
Q +++ ++ KE+ EK+I K K KK + K K+ +
Sbjct: 142 QPGEKKAAKLKEK--------YEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEED 193
Query: 168 ERFQEAKGDSPQE 180
E +E + + +E
Sbjct: 194 EEDEEEEDEEDEE 206
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 50.1 bits (118), Expect = 2e-06
Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 28/203 (13%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTT--ELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
P+ +SSY F + K ++PD+ E ++ ++RW+ + +K ++D +++
Sbjct: 9 PRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDK 68
Query: 108 QVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVA 167
Y E+ K + P K KKK+ PKRP SA+ ++ +
Sbjct: 69 ARYDREM---KNYVPP---------------KGDKKGKKKD---PNAPKRPPSAFFLFCS 107
Query: 168 ERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ-M 222
E + K + P + K + E W S +K+ Y Q A + + +Y ++ ++ +
Sbjct: 108 EHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGK 167
Query: 223 IEVGRKDLLRRTIKKQRKYGAEE 245
E G+K R T K++ +E
Sbjct: 168 SEAGKKGPGRPTGSKKKNEPEDE 190
Score = 41.6 bits (96), Expect = 6e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 153 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 203
G P +PR S+Y +V +E K P + K E WK +S EK +
Sbjct: 4 GDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 204 AKEDETRYHNEMKSW 218
AK D+ RY EMK++
Sbjct: 64 AKSDKARYDREMKNY 78
Score = 37.7 bits (86), Expect = 0.009
Identities = 15/71 (21%), Positives = 36/71 (50%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
+ PK+P S++ F E P K+++P + +++ + W E K+ Y+
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
Query: 108 QVYKEEISRFK 118
+ Y+++I+ ++
Sbjct: 153 EKYEKDIAAYR 163
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 50.1 bits (118), Expect = 2e-06
Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 28/203 (13%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTT--ELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
P+ +SSY F + K ++PD+ E ++ ++RW+ + +K ++D +++
Sbjct: 9 PRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDK 68
Query: 108 QVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVA 167
Y E+ K + P K KKK+ PKRP SA+ ++ +
Sbjct: 69 ARYDREM---KNYVPP---------------KGDKKGKKKD---PNAPKRPPSAFFLFCS 107
Query: 168 ERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ-M 222
E + K + P + K + E W S +K+ Y Q A + + +Y ++ ++ +
Sbjct: 108 EHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGK 167
Query: 223 IEVGRKDLLRRTIKKQRKYGAEE 245
E G+K R T K++ +E
Sbjct: 168 SEAGKKGPGRPTGSKKKNEPEDE 190
Score = 41.6 bits (96), Expect = 6e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 153 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 203
G P +PR S+Y +V +E K P + K E WK +S EK +
Sbjct: 4 GDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 204 AKEDETRYHNEMKSW 218
AK D+ RY EMK++
Sbjct: 64 AKSDKARYDREMKNY 78
Score = 37.7 bits (86), Expect = 0.009
Identities = 15/71 (21%), Positives = 36/71 (50%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
+ PK+P S++ F E P K+++P + +++ + W E K+ Y+
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
Query: 108 QVYKEEISRFK 118
+ Y+++I+ ++
Sbjct: 153 EKYEKDIAAYR 163
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 50.1 bits (118), Expect = 2e-06
Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 28/203 (13%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTT--ELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
P+ +SSY F + K ++PD+ E ++ ++RW+ + +K ++D +++
Sbjct: 9 PRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDK 68
Query: 108 QVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVA 167
Y E+ K + P K KKK+ PKRP SA+ ++ +
Sbjct: 69 ARYDREM---KNYVPP---------------KGDKKGKKKD---PNAPKRPPSAFFLFCS 107
Query: 168 ERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ-M 222
E + K + P + K + E W S +K+ Y Q A + + +Y ++ ++ +
Sbjct: 108 EHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGK 167
Query: 223 IEVGRKDLLRRTIKKQRKYGAEE 245
E G+K R T K++ +E
Sbjct: 168 SEAGKKGPGRPTGSKKKNEPEDE 190
Score = 41.6 bits (96), Expect = 6e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 153 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 203
G P +PR S+Y +V +E K P + K E WK +S EK +
Sbjct: 4 GDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
Query: 204 AKEDETRYHNEMKSW 218
AK D+ RY EMK++
Sbjct: 64 AKSDKARYDREMKNY 78
Score = 37.7 bits (86), Expect = 0.009
Identities = 15/71 (21%), Positives = 36/71 (50%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
+ PK+P S++ F E P K+++P + +++ + W E K+ Y+
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
Query: 108 QVYKEEISRFK 118
+ Y+++I+ ++
Sbjct: 153 EKYEKDIAAYR 163
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 48.9 bits (115), Expect = 4e-06
Identities = 39/183 (21%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 69 KAQNPDA--KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQI 126
K +NPDA K +E +++ ++ W+ + +K ++D +A+ Y+ E+ K + P
Sbjct: 702 KKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREM---KTYIPPKG- 757
Query: 127 MSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKL 182
KKK+ PKRP A+ ++ +E + KG+ P + +
Sbjct: 758 -----------------EKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVV 800
Query: 183 KTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYG 242
K + W N + ++K+ Y + A + + +Y ++ ++ + K + + K ++K
Sbjct: 801 KKLAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKE 860
Query: 243 AEE 245
EE
Sbjct: 861 EEE 863
Score = 42.4 bits (98), Expect = 4e-04
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
+ PK+P ++ F E P K ++P ++++++A W + K+ Y+
Sbjct: 767 NAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLK 826
Query: 108 QVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKE 148
+ YK++I+ ++ + P+ S +K + +K + KKKE
Sbjct: 827 EKYKKDIAAYRAKGKPN---SAKKRV----VKAEKSKKKKE 860
Score = 35.0 bits (79), Expect = 0.060
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 154 KPKRPRSAYNVYVAERFQEAKGDSPQ------EKLKTVKENWKNLSDSEKELYIQHAKED 207
+ KR ++N + + +E K +P E LK E WK + EK + AK D
Sbjct: 682 RKKRILESHNNTLVDPCEEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKAD 741
Query: 208 ETRYHNEMKSW 218
+ Y EMK++
Sbjct: 742 KAHYEREMKTY 752
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 48.9 bits (115), Expect = 4e-06
Identities = 29/129 (22%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
P+KPVS+Y F ++ K QNP+A E+ + +A W L + +K++Y+ A +
Sbjct: 261 PQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKE 320
Query: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAER 169
Y ++++ ++ L + E +D + + ++ P + SA +Y++
Sbjct: 321 YLKQLAAYRASL----VSKSYSEPVDVKTSQPPQLINSKPSVFHGPSQAHSA--LYLSSH 374
Query: 170 FQEAKGDSP 178
+ + G +P
Sbjct: 375 YHQQPGMNP 383
Score = 38.5 bits (88), Expect = 0.005
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 124 SQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ---- 179
S+I EK K+ KKK+ +P++P SAY ++ + KG +P
Sbjct: 230 SKINGGEKRPASDMGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFG 289
Query: 180 EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMI 223
E K V W L + +K++Y + + + Y ++ ++ ++
Sbjct: 290 EVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLV 333
>gi|8922633 high-mobility group 20A [Homo sapiens]
Length = 347
Score = 48.1 bits (113), Expect = 7e-06
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 47 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAE 106
++ PK P++ Y+RF E+ +A+ P+ E+ R + W +LP +K+ Y D +
Sbjct: 100 SNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRD 159
Query: 107 WQVYKEEISRFKE 119
+ Y +E+ ++++
Sbjct: 160 KERYMKELEQYQK 172
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 141 KAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSE 196
K +KK L PK P + Y ++ ER ++ + P+ E + + W L E
Sbjct: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
Query: 197 KELYIQHAKEDETRYHNEMKSWE--EQMIEVGRKDLLRRTIKKQRKYGAEE 245
K+ Y+ A D+ RY E++ ++ E RK R+ K R+ A +
Sbjct: 149 KQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQ 199
>gi|189458896 postmeiotic segregation 1 isoform b [Homo sapiens]
Length = 893
Score = 47.8 bits (112), Expect = 9e-06
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
KKP+S+ F ++ P F +NP + +I + W+ L + +K Y++ + + Y
Sbjct: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
Query: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERF 170
++ R EQ + + K+I A K + +L +PK + R
Sbjct: 593 NSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQKHKLKTSLSNQPKLDELLQSQIEKRRS 652
Query: 171 QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHN 213
Q K +K +K N+K + + E K++ HN
Sbjct: 653 QNIKMVQIPFSMKNLKINFKKQNKVDLE-----EKDEPCLIHN 690
Score = 43.1 bits (100), Expect = 2e-04
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 156 KRPRSAYNVYVAERFQEAKGDSPQEKLKT----VKENWKNLSDSEKELYIQHAKEDETRY 211
K+P SA ++V + + ++P+ L+ ++E WK LS+ EK Y + A +D RY
Sbjct: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
Query: 212 HNEMKSWEEQMIEVGRKD 229
+++MK EQ ++ KD
Sbjct: 593 NSQMKRAIEQESQMSLKD 610
>gi|4505911 postmeiotic segregation 1 isoform a [Homo sapiens]
Length = 932
Score = 47.8 bits (112), Expect = 9e-06
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
KKP+S+ F ++ P F +NP + +I + W+ L + +K Y++ + + Y
Sbjct: 572 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 631
Query: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERF 170
++ R EQ + + K+I A K + +L +PK + R
Sbjct: 632 NSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQKHKLKTSLSNQPKLDELLQSQIEKRRS 691
Query: 171 QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHN 213
Q K +K +K N+K + + E K++ HN
Sbjct: 692 QNIKMVQIPFSMKNLKINFKKQNKVDLE-----EKDEPCLIHN 729
Score = 43.1 bits (100), Expect = 2e-04
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 156 KRPRSAYNVYVAERFQEAKGDSPQEKLKT----VKENWKNLSDSEKELYIQHAKEDETRY 211
K+P SA ++V + + ++P+ L+ ++E WK LS+ EK Y + A +D RY
Sbjct: 572 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 631
Query: 212 HNEMKSWEEQMIEVGRKD 229
+++MK EQ ++ KD
Sbjct: 632 NSQMKRAIEQESQMSLKD 649
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 47.0 bits (110), Expect = 2e-05
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 50/216 (23%)
Query: 50 PKKP---VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAE 106
PKKP +S+Y+ F + K +NP E ++ ++RW+ + +K
Sbjct: 6 PKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEK---------- 54
Query: 107 WQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYV 166
S+F E + +K D+ +K A KK+ PKRP S + ++
Sbjct: 55 --------SKFDE------MAKTDKVHCDREMKGPAKGGKKKKDP-SAPKRPPSGFFLFS 99
Query: 167 AERFQEAKGDSPQEKL----KTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK------ 216
+E + K +P + K + E W NL+DSEK+ YI + + +Y ++
Sbjct: 100 SEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKG 159
Query: 217 -----------SWEEQMIEVGRKDLLRRTIKKQRKY 241
+W++ E ++ +RR + KQ Y
Sbjct: 160 KFDGSKRPAKVAWKKVEEEDEDEEEMRRRMNKQSVY 195
Score = 46.6 bits (109), Expect = 2e-05
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
S PK+P S + FS E P K+ NP ++ +++ + W L DS+K+ Y
Sbjct: 86 SAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLK 145
Query: 108 QVYKEEIS------RFKEQLTPSQI--MSLEKEIMDKHLKRKAMTKKKELTLLGKPKR 157
+ Y+++++ +F P+++ +E+E D+ R+ M K+ L K K+
Sbjct: 146 EKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDEDEEEMRRRMNKQS--VYLSKKKK 201
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 47.0 bits (110), Expect = 2e-05
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 50/216 (23%)
Query: 50 PKKP---VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAE 106
PKKP +S+Y+ F + K +NP E ++ ++RW+ + +K
Sbjct: 6 PKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEK---------- 54
Query: 107 WQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYV 166
S+F E + +K D+ +K A KK+ PKRP S + ++
Sbjct: 55 --------SKFDE------MAKTDKVHCDREMKGPAKGGKKKKDP-SAPKRPPSGFFLFS 99
Query: 167 AERFQEAKGDSPQEKL----KTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK------ 216
+E + K +P + K + E W NL+DSEK+ YI + + +Y ++
Sbjct: 100 SEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKG 159
Query: 217 -----------SWEEQMIEVGRKDLLRRTIKKQRKY 241
+W++ E ++ +RR + KQ Y
Sbjct: 160 KFDGSKRPAKVAWKKVEEEDEDEEEMRRRMNKQSVY 195
Score = 46.6 bits (109), Expect = 2e-05
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
S PK+P S + FS E P K+ NP ++ +++ + W L DS+K+ Y
Sbjct: 86 SAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLK 145
Query: 108 QVYKEEIS------RFKEQLTPSQI--MSLEKEIMDKHLKRKAMTKKKELTLLGKPKR 157
+ Y+++++ +F P+++ +E+E D+ R+ M K+ L K K+
Sbjct: 146 EKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDEDEEEMRRRMNKQS--VYLSKKKK 201
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 47.0 bits (110), Expect = 2e-05
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 50/216 (23%)
Query: 50 PKKP---VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAE 106
PKKP +S+Y+ F + K +NP E ++ ++RW+ + +K
Sbjct: 6 PKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEK---------- 54
Query: 107 WQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYV 166
S+F E + +K D+ +K A KK+ PKRP S + ++
Sbjct: 55 --------SKFDE------MAKTDKVHCDREMKGPAKGGKKKKDP-SAPKRPPSGFFLFS 99
Query: 167 AERFQEAKGDSPQEKL----KTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK------ 216
+E + K +P + K + E W NL+DSEK+ YI + + +Y ++
Sbjct: 100 SEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKG 159
Query: 217 -----------SWEEQMIEVGRKDLLRRTIKKQRKY 241
+W++ E ++ +RR + KQ Y
Sbjct: 160 KFDGSKRPAKVAWKKVEEEDEDEEEMRRRMNKQSVY 195
Score = 46.6 bits (109), Expect = 2e-05
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 48 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 107
S PK+P S + FS E P K+ NP ++ +++ + W L DS+K+ Y
Sbjct: 86 SAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLK 145
Query: 108 QVYKEEIS------RFKEQLTPSQI--MSLEKEIMDKHLKRKAMTKKKELTLLGKPKR 157
+ Y+++++ +F P+++ +E+E D+ R+ M K+ L K K+
Sbjct: 146 EKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDEDEEEMRRRMNKQS--VYLSKKKK 201
>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
Length = 621
Score = 47.0 bits (110), Expect = 2e-05
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
P+KPVS+Y F ++ K QNP+A E+ + +A W L + +K++Y+ A +
Sbjct: 223 PQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKE 282
Query: 110 YKEEISRFKE 119
Y + ++ +K+
Sbjct: 283 YLKALAAYKD 292
Score = 40.0 bits (92), Expect = 0.002
Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 109 VYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAE 168
++++ + F+ QL PSQ K ++ + K++ KK++ +P++P SAY ++ +
Sbjct: 183 LHEDGVEDFRRQL-PSQ-----KTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRD 236
Query: 169 RFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 220
KG +P E K V W +L + +K++Y + + + Y + ++++
Sbjct: 237 TQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKD 292
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,569,948
Number of Sequences: 37866
Number of extensions: 436056
Number of successful extensions: 2642
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 192
Number of HSP's that attempted gapping in prelim test: 2203
Number of HSP's gapped (non-prelim): 552
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.