Guide to the Human Genome
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Name: UBTFL6 Sequence: fasta or formatted (400aa) NCBI GI: 239741686
Description:

PREDICTED: upstream binding transcription factor, RNA polymerase I-like 6

Not currently referenced in the text

Other entries for this name:
alt prot {400aa} PREDICTED: upstream binding transcription factor, RNA polymerase ...
alt mRNA {400aa} PREDICTED: upstream binding transcription factor, RNA polymerase ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         17           2
 C cysteine            1.8          7           1
 D aspartate           5.2         21           2
 E glutamate           9.2         37           4
 F phenylalanine       3.8         15           2
 G glycine             5.2         21           2
 H histidine           2.2          9           1
 I isoleucine          2.8         11           1
 K lysine             12.8         51           2
 L leucine             7.8         31           2
 M methionine          3.5         14           2
 N asparagine          3.8         15           2
 P proline             4.8         19           2
 Q glutamine           7.8         31           1
 R arginine            4.8         19           2
 S serine              8.5         34           3
 T threonine           3.2         13           1
 V valine              4.0         16           1
 W tryptophan          2.0          8           1
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: upstream binding transcription factor, R... 
UBTFL6                1.000   PREDICTED: upstream binding transcription factor, R...
UBTFL6                0.996   PREDICTED: upstream binding transcription factor, R...
UBTFL3                0.965   PREDICTED: upstream binding transcription factor, R...
UBTFL5                0.962   PREDICTED: upstream binding transcription factor, R...
UBTFL1                0.863   upstream binding transcription factor, RNA polymera...
UBTF                  0.322   upstream binding transcription factor, RNA polymera...
UBTF                  0.322   upstream binding transcription factor, RNA polymera...
UBTF                  0.287   upstream binding transcription factor, RNA polymerase...
TFAM                  0.050   transcription factor A, mitochondrial 
HMG20B                0.034   high-mobility group 20B 
HMGB1                 0.031   high-mobility group box 1 
LOC441795             0.030   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.030   PREDICTED: high mobility group protein B3-like prot...
HMG20A                0.030   high-mobility group 20A 
LOC729595             0.029   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.029   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.029   PREDICTED: similar to high mobility group box 3 iso...
HMGB2                 0.026   high-mobility group box 2 
HMGB2                 0.026   high-mobility group box 2 
HMGB2                 0.026   high-mobility group box 2 
HMGB1L1               0.026   high-mobility group box 1-like 1 
LOC645490             0.026   PREDICTED: similar to hCG1991922 
LOC645490             0.026   PREDICTED: similar to hCG1991922 
LOC645490             0.026   PREDICTED: similar to hCG1991922 
LOC729595             0.026   PREDICTED: similar to high mobility group box 3 iso...
HMGB3                 0.026   high-mobility group box 3 
TOX4                  0.026   epidermal Langerhans cell protein LCP1 
SMARCE1               0.025   SWI/SNF-related matrix-associated actin-dependent re...
CENPE                 0.025   centromere protein E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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