PSMA1 29240

Name: PSMA1	Sequence: fasta or formatted (263aa)		NCBI GI: 4506179
Description: proteasome alpha 1 subunit isoform 2		Referenced in: Proteasome
Other entries for this name: alt prot [130aa] proteasome alpha 1 subunit isoform 3 alt prot [269aa] proteasome alpha 1 subunit isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.7 23 2 C cysteine 1.9 5 1 D aspartate 6.5 17 4 E glutamate 6.8 18 2 F phenylalanine 3.4 9 1 G glycine 6.1 16 1 H histidine 3.4 9 1 I isoleucine 5.3 14 1 K lysine 4.6 12 2 L leucine 9.1 24 2 M methionine 3.0 8 1 N asparagine 3.0 8 1 P proline 5.3 14 1 Q glutamine 5.7 15 1 R arginine 7.2 19 2 S serine 6.1 16 1 T threonine 4.6 12 2 V valine 5.7 15 1 W tryptophan 0.4 1 1 Y tyrosine 3.0 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasome alpha 1 subunit isoform 2 PSMA1 0.996 proteasome alpha 1 subunit isoform 1 PSMA1 0.400 proteasome alpha 1 subunit isoform 3 PSMA8 0.229 proteasome alpha 8 subunit isoform 2 PSMA7 0.223 proteasome alpha 7 subunit PSMA8 0.215 proteasome alpha 8 subunit isoform 1 PSMA2 0.189 proteasome subunit alpha type 2 PSMA5 0.189 proteasome alpha 5 subunit PSMA8 0.174 proteasome alpha 8 subunit isoform 3 PSMA4 0.160 proteasome alpha 4 subunit isoform 1 PSMA4 0.160 proteasome alpha 4 subunit isoform 1 PSMA6 0.156 proteasome alpha 6 subunit PSMA3 0.142 proteasome alpha 3 subunit isoform 1 PSMA3 0.130 proteasome alpha 3 subunit isoform 2 PSMA4 0.087 proteasome alpha 4 subunit isoform 2 LOC121906 0.045 PREDICTED: similar to hCG30646 LOC121906 0.045 PREDICTED: similar to hCG30646 LOC121906 0.045 PREDICTED: similar to hCG30646 PSMB5 0.020 proteasome beta 5 subunit isoform 1 PSMB10 0.018 proteasome beta 10 subunit proprotein PSMB7 0.016 proteasome beta 7 subunit proprotein C1orf173 0.016 hypothetical protein LOC127254 TTC28 0.010 tetratricopeptide repeat domain 28 POLK 0.010 DNA-directed DNA polymerase kappa HIP1 0.008 huntingtin interacting protein 1 FAM48B1 0.008 hypothetical protein LOC100130302 GRM1 0.006 glutamate receptor, metabotropic 1 isoform alpha pr... SCAF1 0.006 SR-related CTD-associated factor 1 GOSR2 0.006 golgi SNAP receptor complex member 2 isoform A [Homo... GOSR2 0.006 golgi SNAP receptor complex member 2 isoform B [Homo... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.