Guide to the Human Genome
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Name: PSMB7 Sequence: fasta or formatted (277aa) NCBI GI: 4506203
Description:

proteasome beta 7 subunit proprotein

Referenced in:

Proteasome

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         24           2
 C cysteine            2.2          6           2
 D aspartate           5.4         15           1
 E glutamate           5.4         15           4
 F phenylalanine       3.2          9           1
 G glycine             9.0         25           2
 H histidine           1.4          4           1
 I isoleucine          5.1         14           1
 K lysine              6.1         17           2
 L leucine             8.7         24           1
 M methionine          3.2          9           1
 N asparagine          4.0         11           1
 P proline             4.3         12           2
 Q glutamine           1.4          4           1
 R arginine            5.1         14           2
 S serine              6.1         17           2
 T threonine           8.3         23           2
 V valine              8.3         23           2
 W tryptophan          0.0          0           0
 Y tyrosine            4.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteasome beta 7 subunit proprotein 
PSMB10                0.570   proteasome beta 10 subunit proprotein 
PSMB6                 0.148   proteasome beta 6 subunit 
PSMB9                 0.127   proteasome beta 9 subunit isoform 2 proprotein [Homo...
PSMB9                 0.127   proteasome beta 9 subunit isoform 1 proprotein 
PSMB11                0.121   proteasome beta 11 subunit 
PSMB5                 0.117   proteasome beta 5 subunit isoform 1 
PSMB8                 0.108   proteasome beta 8 subunit isoform E2 proprotein [Hom...
PSMB8                 0.108   proteasome beta 8 subunit isoform E1 proprotein [Homo...
PSMB5                 0.066   proteasome beta 5 subunit isoform 2 
PSMB5                 0.062   proteasome beta 5 subunit isoform 3 
PSMA5                 0.045   proteasome alpha 5 subunit 
PSMB1                 0.045   proteasome beta 1 subunit 
PSMB2                 0.040   proteasome beta 2 subunit 
PSMB3                 0.036   proteasome beta 3 subunit 
PSMB4                 0.034   proteasome beta 4 subunit 
PSMA7                 0.032   proteasome alpha 7 subunit 
PSMA1                 0.015   proteasome alpha 1 subunit isoform 2 
PSMA1                 0.015   proteasome alpha 1 subunit isoform 1 
CCT8                  0.013   chaperonin containing TCP1, subunit 8 (theta) 
ASAH1                 0.008   N-acylsphingosine amidohydrolase 1 isoform c 
ASAH1                 0.008   N-acylsphingosine amidohydrolase 1 isoform a prepro...
ASAH1                 0.008   N-acylsphingosine amidohydrolase 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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