PSMA4 29243

Name: PSMA4	Sequence: fasta or formatted (261aa)		NCBI GI: 4506185
Description: proteasome alpha 4 subunit isoform 1		Referenced in: Proteasome
Other entries for this name: alt mRNA [261aa] proteasome alpha 4 subunit isoform 1 alt prot [190aa] proteasome alpha 4 subunit isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.8 23 3 C cysteine 1.9 5 1 D aspartate 4.2 11 1 E glutamate 10.0 26 4 F phenylalanine 2.3 6 2 G glycine 6.5 17 2 H histidine 1.5 4 1 I isoleucine 5.7 15 1 K lysine 10.0 26 2 L leucine 10.3 27 2 M methionine 2.3 6 1 N asparagine 3.8 10 2 P proline 1.9 5 1 Q glutamine 5.0 13 1 R arginine 4.6 12 2 S serine 5.4 14 1 T threonine 5.0 13 2 V valine 5.4 14 1 W tryptophan 0.8 2 1 Y tyrosine 4.6 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasome alpha 4 subunit isoform 1 PSMA4 1.000 proteasome alpha 4 subunit isoform 1 PSMA4 0.716 proteasome alpha 4 subunit isoform 2 PSMA8 0.292 proteasome alpha 8 subunit isoform 2 PSMA7 0.278 proteasome alpha 7 subunit PSMA8 0.278 proteasome alpha 8 subunit isoform 1 PSMA2 0.241 proteasome subunit alpha type 2 PSMA8 0.227 proteasome alpha 8 subunit isoform 3 PSMA6 0.215 proteasome alpha 6 subunit PSMA5 0.211 proteasome alpha 5 subunit PSMA3 0.174 proteasome alpha 3 subunit isoform 1 PSMA1 0.164 proteasome alpha 1 subunit isoform 2 PSMA1 0.164 proteasome alpha 1 subunit isoform 1 PSMA3 0.162 proteasome alpha 3 subunit isoform 2 PSMA1 0.083 proteasome alpha 1 subunit isoform 3 PSMB10 0.063 proteasome beta 10 subunit proprotein LOC121906 0.045 PREDICTED: similar to hCG30646 LOC121906 0.045 PREDICTED: similar to hCG30646 LOC121906 0.045 PREDICTED: similar to hCG30646 BAT2D1 0.030 HBxAg transactivated protein 2 LOC100133698 0.028 PREDICTED: hypothetical protein SCAPER 0.024 S-phase cyclin A-associated protein in the ER isofo... C14orf38 0.024 PREDICTED: hypothetical protein C14orf38 0.024 PREDICTED: hypothetical protein C14orf38 0.024 PREDICTED: hypothetical protein SCAPER 0.024 S-phase cyclin A-associated protein in the ER isofo... UPF2 0.024 UPF2 regulator of nonsense transcripts homolog [Homo... UPF2 0.024 UPF2 regulator of nonsense transcripts homolog [Homo... BAZ1A 0.024 bromodomain adjacent to zinc finger domain, 1A isofo... BAZ1A 0.024 bromodomain adjacent to zinc finger domain, 1A isofo... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.