Guide to the Human Genome
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Name: PSMA4 Sequence: fasta or formatted (261aa) NCBI GI: 156713442
Description:

proteasome alpha 4 subunit isoform 1

Referenced in:

Proteasome

Other entries for this name:
alt prot [190aa] proteasome alpha 4 subunit isoform 2
alt mRNA [261aa] proteasome alpha 4 subunit isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         23           3
 C cysteine            1.9          5           1
 D aspartate           4.2         11           1
 E glutamate          10.0         26           4
 F phenylalanine       2.3          6           2
 G glycine             6.5         17           2
 H histidine           1.5          4           1
 I isoleucine          5.7         15           1
 K lysine             10.0         26           2
 L leucine            10.3         27           2
 M methionine          2.3          6           1
 N asparagine          3.8         10           2
 P proline             1.9          5           1
 Q glutamine           5.0         13           1
 R arginine            4.6         12           2
 S serine              5.4         14           1
 T threonine           5.0         13           2
 V valine              5.4         14           1
 W tryptophan          0.8          2           1
 Y tyrosine            4.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteasome alpha 4 subunit isoform 1 
PSMA4                 1.000   proteasome alpha 4 subunit isoform 1 
PSMA4                 0.716   proteasome alpha 4 subunit isoform 2 
PSMA8                 0.292   proteasome alpha 8 subunit isoform 2 
PSMA7                 0.278   proteasome alpha 7 subunit 
PSMA8                 0.278   proteasome alpha 8 subunit isoform 1 
PSMA2                 0.241   proteasome subunit alpha type 2 
PSMA8                 0.227   proteasome alpha 8 subunit isoform 3 
PSMA6                 0.215   proteasome alpha 6 subunit 
PSMA5                 0.211   proteasome alpha 5 subunit 
PSMA3                 0.174   proteasome alpha 3 subunit isoform 1 
PSMA1                 0.164   proteasome alpha 1 subunit isoform 2 
PSMA1                 0.164   proteasome alpha 1 subunit isoform 1 
PSMA3                 0.162   proteasome alpha 3 subunit isoform 2 
PSMA1                 0.083   proteasome alpha 1 subunit isoform 3 
PSMB10                0.063   proteasome beta 10 subunit proprotein 
LOC121906             0.045   PREDICTED: similar to hCG30646 
LOC121906             0.045   PREDICTED: similar to hCG30646 
LOC121906             0.045   PREDICTED: similar to hCG30646 
BAT2D1                0.030   HBxAg transactivated protein 2 
LOC100133698          0.028   PREDICTED: hypothetical protein 
SCAPER                0.024   S-phase cyclin A-associated protein in the ER isofo...
C14orf38              0.024   PREDICTED: hypothetical protein 
C14orf38              0.024   PREDICTED: hypothetical protein 
C14orf38              0.024   PREDICTED: hypothetical protein 
SCAPER                0.024   S-phase cyclin A-associated protein in the ER isofo...
UPF2                  0.024   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.024   UPF2 regulator of nonsense transcripts homolog [Homo...
BAZ1A                 0.024   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.024   bromodomain adjacent to zinc finger domain, 1A isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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