PSMA1 14221

Name: PSMA1	Sequence: fasta or formatted (130aa)		NCBI GI: 221316716
Description: proteasome alpha 1 subunit isoform 3		Referenced in: Proteasome
Other entries for this name: alt prot [269aa] proteasome alpha 1 subunit isoform 1 alt prot [263aa] proteasome alpha 1 subunit isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.2 12 2 C cysteine 1.5 2 1 D aspartate 5.4 7 1 E glutamate 3.8 5 1 F phenylalanine 6.2 8 1 G glycine 5.4 7 1 H histidine 3.8 5 1 I isoleucine 6.2 8 1 K lysine 4.6 6 2 L leucine 10.8 14 2 M methionine 4.6 6 1 N asparagine 3.8 5 1 P proline 2.3 3 1 Q glutamine 5.4 7 1 R arginine 6.2 8 1 S serine 7.7 10 2 T threonine 3.1 4 1 V valine 7.7 10 1 W tryptophan 0.8 1 1 Y tyrosine 1.5 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasome alpha 1 subunit isoform 3 PSMA1 0.868 proteasome alpha 1 subunit isoform 2 PSMA1 0.859 proteasome alpha 1 subunit isoform 1 PSMA8 0.248 proteasome alpha 8 subunit isoform 2 PSMA7 0.244 proteasome alpha 7 subunit PSMA5 0.226 proteasome alpha 5 subunit PSMA3 0.222 proteasome alpha 3 subunit isoform 2 PSMA3 0.222 proteasome alpha 3 subunit isoform 1 PSMA8 0.218 proteasome alpha 8 subunit isoform 1 PSMA4 0.175 proteasome alpha 4 subunit isoform 1 PSMA4 0.175 proteasome alpha 4 subunit isoform 1 PSMA2 0.171 proteasome subunit alpha type 2 PSMA6 0.167 proteasome alpha 6 subunit PSMA8 0.137 proteasome alpha 8 subunit isoform 3 LOC121906 0.098 PREDICTED: similar to hCG30646 LOC121906 0.098 PREDICTED: similar to hCG30646 LOC121906 0.098 PREDICTED: similar to hCG30646 TTC28 0.021 tetratricopeptide repeat domain 28 PSMA4 0.017 proteasome alpha 4 subunit isoform 2 GOSR2 0.013 golgi SNAP receptor complex member 2 isoform A [Homo... GOSR2 0.013 golgi SNAP receptor complex member 2 isoform B [Homo... QTRT1 0.013 queuine tRNA-ribosyltransferase 1 GPR126 0.013 G protein-coupled receptor 126 alpha 1 precursor [Ho... GPR126 0.013 G protein-coupled receptor 126 beta 1 precursor [Hom... GPR126 0.013 G protein-coupled receptor 126 alpha 2 precursor [Ho... GPR126 0.013 G protein-coupled receptor 126 beta 2 precursor [Hom... VPS13D 0.009 vacuolar protein sorting 13D isoform 2 VPS13D 0.009 vacuolar protein sorting 13D isoform 1 FAM48B1 0.009 hypothetical protein LOC100130302 TRIM69 0.004 tripartite motif-containing 69 isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.