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Search of human proteins with 4505981
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505981 pro-platelet basic protein precursor [Homo sapiens] 253 3e-68
gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens] 160 3e-40
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens] 91 2e-19
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi... 87 4e-18
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens] 86 6e-18
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens] 82 9e-17
gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4) ... 80 3e-16
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota... 78 2e-15
gi|4505735 platelet factor 4 variant 1 [Homo sapiens] 75 2e-14
gi|10834978 interleukin 8 precursor [Homo sapiens] 67 3e-12
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens] 55 1e-08
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens] 48 2e-06
gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac... 43 8e-05
gi|4885589 small inducible cytokine B11 precursor [Homo sapiens] 37 0.005
gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 35 0.012
gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 35 0.012
gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 35 0.012
gi|20149565 small inducible cytokine B14 precursor [Homo sapiens] 32 0.18
gi|13435127 TRAF3-interacting JNK-activating modulator [Homo sap... 32 0.18
gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Hom... 30 0.51
gi|5454040 small inducible cytokine A19 precursor [Homo sapiens] 30 0.51
gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Hom... 30 0.51
gi|18375507 apurinic/apyrimidinic endonuclease 2 [Homo sapiens] 30 0.67
gi|223671888 interleukin-1 receptor-associated kinase 4 isoform ... 27 3.3
gi|223671885 interleukin-1 receptor-associated kinase 4 isoform ... 27 3.3
gi|223671883 interleukin-1 receptor-associated kinase 4 isoform ... 27 3.3
gi|166795293 interleukin-1 receptor-associated kinase 4 isoform ... 27 3.3
gi|166795295 interleukin-1 receptor-associated kinase 4 isoform ... 27 3.3
gi|14602449 chemokine (C-C motif) ligand 15 precursor [Homo sapi... 27 3.3
gi|5174671 chemokine (C-C motif) ligand 26 precursor [Homo sapiens] 27 3.3
>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
Length = 128
Score = 253 bits (646), Expect = 3e-68
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE 60
MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE
Sbjct: 1 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE 60
Query: 61 LRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKK 120
LRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKK
Sbjct: 61 LRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKK 120
Query: 121 LAGDESAD 128
LAGDESAD
Sbjct: 121 LAGDESAD 128
>gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens]
Length = 126
Score = 160 bits (404), Expect = 3e-40
Identities = 87/128 (67%), Positives = 99/128 (77%), Gaps = 6/128 (4%)
Query: 1 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE 60
MSLRL TPSCNSARP HALQVLLLLSLLLTAL S T GQ+KRNL K K DSDLY E
Sbjct: 1 MSLRLKATPSCNSARPFHALQVLLLLSLLLTALPSCTNGQSKRNLGKSK----DSDLYIE 56
Query: 61 LRCMCIKTTSGIHPKN-IQSLEV-IGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQ 118
L C+C+K+ SGIHP N I ++ + + G CN+V+VIA LKDGRK+ LDP+APRIKKIVQ
Sbjct: 57 LCCVCVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQ 116
Query: 119 KKLAGDES 126
K L GD S
Sbjct: 117 KMLEGDGS 124
>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
Length = 107
Score = 91.3 bits (225), Expect = 2e-19
Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 12/104 (11%)
Query: 23 LLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLEV 82
LL ++LLL L ++ + ++A ELRC C++T GIHPKNIQS+ V
Sbjct: 15 LLRVALLLLLLVAAGRRAAGASVA------------TELRCQCLQTLQGIHPKNIQSVNV 62
Query: 83 IGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDES 126
G HC Q EVIATLK+GRK CL+P +P +KKI++K L D+S
Sbjct: 63 KSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKS 106
>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
sapiens]
Length = 114
Score = 87.0 bits (214), Expect = 4e-18
Identities = 36/64 (56%), Positives = 53/64 (82%)
Query: 60 ELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQK 119
ELRC+C++TT G+HPK I +L+V G C++VEV+A+LK+G++ICLDP+AP +KK++QK
Sbjct: 46 ELRCVCLQTTQGVHPKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQK 105
Query: 120 KLAG 123
L G
Sbjct: 106 ILDG 109
>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
Length = 107
Score = 86.3 bits (212), Expect = 6e-18
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 12/104 (11%)
Query: 23 LLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLEV 82
LL ++LLL L ++++ + + L ELRC C++T GIH KNIQS++V
Sbjct: 15 LLRVALLLLLLVAASR------------RAAGAPLATELRCQCLQTLQGIHLKNIQSVKV 62
Query: 83 IGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDES 126
G HC Q EVIATLK+G+K CL+P +P +KKI++K L +S
Sbjct: 63 KSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKS 106
>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
Length = 107
Score = 82.4 bits (202), Expect = 9e-17
Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 12/99 (12%)
Query: 23 LLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLEV 82
LL ++LLL L ++++ + + + ELRC C++T GIH KNIQS+ V
Sbjct: 15 LLRVALLLLLLVAASR------------RAAGASVVTELRCQCLQTLQGIHLKNIQSVNV 62
Query: 83 IGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKL 121
G HC Q EVIATLK+G+K CL+P +P ++KI++K L
Sbjct: 63 RSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKIL 101
>gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4)
[Homo sapiens]
Length = 101
Score = 80.5 bits (197), Expect = 3e-16
Identities = 37/70 (52%), Positives = 52/70 (74%)
Query: 52 SLDSDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAP 111
S +++ +L+C+C+KTTS + P++I SLEVI G HC ++IATLK+GRKICLD AP
Sbjct: 30 SAEAEEDGDLQCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAP 89
Query: 112 RIKKIVQKKL 121
KKI++K L
Sbjct: 90 LYKKIIKKLL 99
>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
Length = 114
Score = 77.8 bits (190), Expect = 2e-15
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 21/119 (17%)
Query: 9 PSCNSAR---PLHALQVLLLLSLLLTA---LASSTKGQTKRNLAKGKEESLDSDLYAELR 62
PS +AR P +L LL L LLLT LAS+ S + ELR
Sbjct: 4 PSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPV---------------SAVLTELR 48
Query: 63 CMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKL 121
C C++ T ++PK I L+V G C++VEV+A+LK+G+++CLDP+AP +KK++QK L
Sbjct: 49 CTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKIL 107
>gi|4505735 platelet factor 4 variant 1 [Homo sapiens]
Length = 104
Score = 74.7 bits (182), Expect = 2e-14
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 60 ELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQK 119
+L+C+C+KTTS + P++I SLEVI G HC ++IATLK+GRKICLD A KKI+++
Sbjct: 41 DLQCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKE 100
Query: 120 KL 121
L
Sbjct: 101 HL 102
>gi|10834978 interleukin 8 precursor [Homo sapiens]
Length = 99
Score = 67.4 bits (163), Expect = 3e-12
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 60 ELRCMCIKTTSG-IHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQ 118
ELRC CIKT S HPK I+ L VI G HC E+I L DGR++CLDP ++++V+
Sbjct: 31 ELRCQCIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVE 90
Query: 119 KKLAGDESA 127
K L E++
Sbjct: 91 KFLKRAENS 99
>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
Length = 125
Score = 55.1 bits (131), Expect = 1e-08
Identities = 23/59 (38%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 62 RCMCIKTTSG-IHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQK 119
RC CI T G IH ++++ L+ C ++E+IATLK+G + CL+PD+ +K++++K
Sbjct: 30 RCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKK 88
>gi|149999382 small inducible cytokine B10 precursor [Homo sapiens]
Length = 98
Score = 48.1 bits (113), Expect = 2e-06
Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 61 LRCMCIKTTSG-IHPKNIQSLEVIGKGTHCNQVEVIATL-KDGRKICLDPDAPRIKKIVQ 118
+RC CI ++ ++P++++ LE+I C +VE+IAT+ K G K CL+P++ IK +++
Sbjct: 28 VRCTCISISNQPVNPRSLEKLEIIPASQFCPRVEIIATMKKKGEKRCLNPESKAIKNLLK 87
>gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell
chemoattractant) [Homo sapiens]
Length = 109
Score = 42.7 bits (99), Expect = 8e-05
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 58 YAELRCMCIKTTSGIHPKN-IQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKI 116
Y LRC C++ +S P+ I ++++ +G C + E+I K+ +C+DP A I+++
Sbjct: 28 YTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRM 87
Query: 117 VQ 118
++
Sbjct: 88 ME 89
>gi|4885589 small inducible cytokine B11 precursor [Homo sapiens]
Length = 94
Score = 36.6 bits (83), Expect = 0.005
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 62 RCMCIKT-TSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGR-KICLDPDAPRIKKIVQK 119
RC+CI + +I+ ++ +C+++EVI TLK+ + + CL+P + + + I++K
Sbjct: 29 RCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKK 88
>gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform beta [Homo sapiens]
Length = 93
Score = 35.4 bits (80), Expect = 0.012
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 19/102 (18%)
Query: 21 QVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSL 80
+V+++L L+LTAL L+ GK SL RC C S + N++ L
Sbjct: 4 KVVVVLVLVLTALC----------LSDGKPVSLS------YRCPCRFFESHVARANVKHL 47
Query: 81 EVIGKGTHCNQVEVIATLKDG-RKICLDPDAPRIKKIVQKKL 121
+++ +C ++++A LK+ R++C+DP I++ ++K L
Sbjct: 48 KILNT-PNC-ALQIVARLKNNNRQVCIDPKLKWIQEYLEKAL 87
>gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform gamma [Homo sapiens]
Length = 119
Score = 35.4 bits (80), Expect = 0.012
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 19/102 (18%)
Query: 21 QVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSL 80
+V+++L L+LTAL L+ GK SL RC C S + N++ L
Sbjct: 4 KVVVVLVLVLTALC----------LSDGKPVSLS------YRCPCRFFESHVARANVKHL 47
Query: 81 EVIGKGTHCNQVEVIATLKDG-RKICLDPDAPRIKKIVQKKL 121
+++ +C ++++A LK+ R++C+DP I++ ++K L
Sbjct: 48 KILNT-PNC-ALQIVARLKNNNRQVCIDPKLKWIQEYLEKAL 87
>gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform alpha [Homo sapiens]
Length = 89
Score = 35.4 bits (80), Expect = 0.012
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 19/102 (18%)
Query: 21 QVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSL 80
+V+++L L+LTAL L+ GK SL RC C S + N++ L
Sbjct: 4 KVVVVLVLVLTALC----------LSDGKPVSLS------YRCPCRFFESHVARANVKHL 47
Query: 81 EVIGKGTHCNQVEVIATLKDG-RKICLDPDAPRIKKIVQKKL 121
+++ +C ++++A LK+ R++C+DP I++ ++K L
Sbjct: 48 KILNT-PNC-ALQIVARLKNNNRQVCIDPKLKWIQEYLEKAL 87
>gi|20149565 small inducible cytokine B14 precursor [Homo sapiens]
Length = 111
Score = 31.6 bits (70), Expect = 0.18
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 62 RCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKD-----GRKICLDPDAPRIKKI 116
+C C + I +++ LE+ K HC + VI T K G++ CL P K+
Sbjct: 36 KCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRF 95
Query: 117 VQ 118
++
Sbjct: 96 IK 97
>gi|13435127 TRAF3-interacting JNK-activating modulator [Homo
sapiens]
Length = 531
Score = 31.6 bits (70), Expect = 0.18
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 25 LLSLLLTALASSTKGQTKRNLAKGKEESLDSDLY 58
LLS L+ A SS KGQ + KGK SL++ LY
Sbjct: 201 LLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLY 234
>gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Homo
sapiens]
Length = 93
Score = 30.0 bits (66), Expect = 0.51
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 65 CIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIV 117
C TS P+N + + + C++ VI K GR++C DP ++K V
Sbjct: 35 CFSYTSRQIPQNFIA-DYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYV 86
>gi|5454040 small inducible cytokine A19 precursor [Homo sapiens]
Length = 98
Score = 30.0 bits (66), Expect = 0.51
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 89 CNQVEVIATLKDGRKICLDPDAPRIKKIVQK 119
C V+ T GR++C PD P +++I+Q+
Sbjct: 55 CRVPAVVFTTLRGRQLCAPPDQPWVERIIQR 85
>gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Homo
sapiens]
Length = 93
Score = 30.0 bits (66), Expect = 0.51
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 65 CIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIV 117
C TS P+N + + + C++ VI K GR++C DP ++K V
Sbjct: 35 CFSYTSRQIPQNFIA-DYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYV 86
>gi|18375507 apurinic/apyrimidinic endonuclease 2 [Homo sapiens]
Length = 518
Score = 29.6 bits (65), Expect = 0.67
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 8 TPSCNSARPLHALQVLLLLSLLLT-------ALASSTKGQTKRNLAKGKEE 51
+PSC A P L L L+S L+T A+A KGQ K + AK ++E
Sbjct: 400 SPSCPQASPDIELPSLPLMSALMTPKTPEEKAVAKVVKGQAKTSEAKDEKE 450
>gi|223671888 interleukin-1 receptor-associated kinase 4 isoform b
[Homo sapiens]
Length = 336
Score = 27.3 bits (59), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 60 ELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICL 106
+L M TT + + Q ++V+ K H N VE++ DG +CL
Sbjct: 90 KLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCL 136
>gi|223671885 interleukin-1 receptor-associated kinase 4 isoform b
[Homo sapiens]
Length = 336
Score = 27.3 bits (59), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 60 ELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICL 106
+L M TT + + Q ++V+ K H N VE++ DG +CL
Sbjct: 90 KLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCL 136
>gi|223671883 interleukin-1 receptor-associated kinase 4 isoform b
[Homo sapiens]
Length = 336
Score = 27.3 bits (59), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 60 ELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICL 106
+L M TT + + Q ++V+ K H N VE++ DG +CL
Sbjct: 90 KLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCL 136
>gi|166795293 interleukin-1 receptor-associated kinase 4 isoform a
[Homo sapiens]
Length = 460
Score = 27.3 bits (59), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 60 ELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICL 106
+L M TT + + Q ++V+ K H N VE++ DG +CL
Sbjct: 214 KLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCL 260
>gi|166795295 interleukin-1 receptor-associated kinase 4 isoform a
[Homo sapiens]
Length = 460
Score = 27.3 bits (59), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 60 ELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICL 106
+L M TT + + Q ++V+ K H N VE++ DG +CL
Sbjct: 214 KLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCL 260
>gi|14602449 chemokine (C-C motif) ligand 15 precursor [Homo
sapiens]
Length = 113
Score = 27.3 bits (59), Expect = 3.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 87 THCNQVEVIATLKDGRKICLDPDAPRIKKIVQK 119
+ C++ VI K GR++C P P ++ ++K
Sbjct: 75 SECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKK 107
>gi|5174671 chemokine (C-C motif) ligand 26 precursor [Homo sapiens]
Length = 94
Score = 27.3 bits (59), Expect = 3.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 89 CNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLA 122
C+Q VI T K G+K+C P KK VQK ++
Sbjct: 57 CSQRAVIFTTKRGKKVCTHPR----KKWVQKYIS 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,375,794
Number of Sequences: 37866
Number of extensions: 157345
Number of successful extensions: 426
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 39
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.