Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4505183
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505183 CD99 antigen isoform a precursor [Homo sapiens]
(185 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505183 CD99 antigen isoform a precursor [Homo sapiens] 376 e-105
gi|171543879 CD99 antigen isoform b precursor [Homo sapiens] 333 7e-92
gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo sapi... 80 1e-15
gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens] 79 3e-15
gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens] 75 4e-14
gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens] 54 6e-08
gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens] 53 2e-07
gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens] 49 3e-06
gi|41352705 kinesin family member 3C [Homo sapiens] 39 0.002
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 39 0.002
gi|4758896 peroxisomal biogenesis factor 14 [Homo sapiens] 39 0.003
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 39 0.003
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 39 0.003
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 38 0.004
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 38 0.004
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 38 0.004
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 38 0.006
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 38 0.006
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 38 0.006
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 37 0.013
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 37 0.013
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 37 0.013
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 37 0.013
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 37 0.013
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 37 0.013
gi|222831660 family with sequence similarity 171, member A2 [Hom... 36 0.017
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 36 0.017
gi|46409372 G protein-coupled receptor 153 [Homo sapiens] 36 0.017
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 36 0.022
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 36 0.022
>gi|4505183 CD99 antigen isoform a precursor [Homo sapiens]
Length = 185
Score = 376 bits (965), Expect = e-105
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV 60
MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
Sbjct: 1 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV 60
Query: 61 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE 120
DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
Sbjct: 61 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE 120
Query: 121 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR 180
ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
Sbjct: 121 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR 180
Query: 181 TLLEK 185
TLLEK
Sbjct: 181 TLLEK 185
>gi|171543879 CD99 antigen isoform b precursor [Homo sapiens]
Length = 169
Score = 333 bits (853), Expect = 7e-92
Identities = 169/185 (91%), Positives = 169/185 (91%), Gaps = 16/185 (8%)
Query: 1 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV 60
MARGAALALLLFGLLGVLVAAPDGGFDLSDALP GDDFDLGDAVV
Sbjct: 1 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV 44
Query: 61 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE 120
DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
Sbjct: 45 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE 104
Query: 121 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR 180
ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
Sbjct: 105 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR 164
Query: 181 TLLEK 185
TLLEK
Sbjct: 165 TLLEK 169
>gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo
sapiens]
Length = 262
Score = 79.7 bits (195), Expect = 1e-15
Identities = 71/194 (36%), Positives = 95/194 (48%), Gaps = 46/194 (23%)
Query: 22 PDGGFDLSDALPDNEN--KKP-----------TAIPKKP--------SAGDDFDLGDAVV 60
P G DL+DAL D ++ +KP T K+P + G+DFDL DA+
Sbjct: 67 PGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFDLADALD 126
Query: 61 D-GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE---GKGGSDGG-GSHR 115
D + DD R KP+ + G FSD DL D V GGE KG DG GS+
Sbjct: 127 DRNDRDDGRR----KPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSND 174
Query: 116 KEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQG-EVDMESHRNAN 173
G A PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +QG D N
Sbjct: 175 DPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQQGLNADYVKGENLE 232
Query: 174 A----EPAVQRTLL 183
A EP V+ + L
Sbjct: 233 AVVCEEPQVKYSTL 246
>gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens]
Length = 213
Score = 78.6 bits (192), Expect = 3e-15
Identities = 76/208 (36%), Positives = 99/208 (47%), Gaps = 42/208 (20%)
Query: 3 RGAALALLLFGLLGVLVAAPDGGFD---LSDALPDNENKKP-----TAIPKKP------- 47
R A L L F L LV G FD L DA+ + + K T K+P
Sbjct: 5 RSAFLVCLAFSL-ATLVQRGSGDFDDFNLEDAVKETSSVKQRWNHVTTTTKRPVTTRAPA 63
Query: 48 -SAGDDFDLGDAVVD-GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE-- 103
+ G+DFDL DA+ D + DD R KP+ + G FSD DL D V GGE
Sbjct: 64 NTLGNDFDLADALDDRNDRDDGRR----KPI--------AGGGGFSDKDLEDIVGGGEYK 111
Query: 104 -GKGGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAE 160
KG DG GS+ G A PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +
Sbjct: 112 PDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQ 169
Query: 161 QG-EVDMESHRNANA----EPAVQRTLL 183
QG D N A EP V+ + L
Sbjct: 170 QGLNADYVKGENLEAVVCEEPQVKYSTL 197
>gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens]
Length = 190
Score = 74.7 bits (182), Expect = 4e-14
Identities = 72/195 (36%), Positives = 93/195 (47%), Gaps = 39/195 (20%)
Query: 3 RGAALALLLFGLLGVLVAAPDGGFD---LSDALPDNENKKPTAIPKKPSAGDDFDLGDAV 59
R A L L F L LV G FD L DA+ + + K +DFDL DA+
Sbjct: 5 RSAFLVCLAFSL-ATLVQRGSGDFDDFNLEDAVKETSSVKR----------NDFDLADAL 53
Query: 60 VD-GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE---GKGGSDGG-GSH 114
D + DD R KP+ + G FSD DL D V GGE KG DG GS+
Sbjct: 54 DDRNDRDDGRR----KPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSN 101
Query: 115 RKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQG-EVDMESHRNA 172
G A PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +QG D N
Sbjct: 102 DDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQQGLNADYVKGENL 159
Query: 173 NA----EPAVQRTLL 183
A EP V+ + L
Sbjct: 160 EAVVCEEPQVKYSTL 174
>gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens]
Length = 180
Score = 54.3 bits (129), Expect = 6e-08
Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 32/156 (20%)
Query: 26 FDLSDALPDNE-NKKPTA--IPK-KPSAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNP 81
FDL+DAL D E KKP + PK KP + D+ G N PRP KP P P P
Sbjct: 25 FDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDS---GGNIYPRP----KPRPQPQP 77
Query: 82 -NHPSSSGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEGEEADAP------ 124
N +S G F+D D DG +GG G G S G S G + +
Sbjct: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEG 137
Query: 125 ----GVIPGIVGAVVVAVAGAISSFIAYQKKKLCFK 156
++ IV VVV + GA +S+ ++ CF+
Sbjct: 138 NMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFR 173
>gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens]
Length = 181
Score = 52.8 bits (125), Expect = 2e-07
Identities = 50/155 (32%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 26 FDLSDALPDNE-NKKPTA--IPK-KPSAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNP 81
FDL+DAL D E KKP + PK KP + D+ G N PRP P+P P P
Sbjct: 25 FDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDS---GGNIYPRPK--PRPQPQPGN 79
Query: 82 NHPSSSGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEG----------EEA 121
+ S F+D D DG +GG G G S G S G E
Sbjct: 80 SGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEGN 139
Query: 122 DAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFK 156
++ IV VVV + GA +S+ ++ CF+
Sbjct: 140 MVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFR 174
>gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens]
Length = 195
Score = 48.5 bits (114), Expect = 3e-06
Identities = 53/171 (30%), Positives = 68/171 (39%), Gaps = 47/171 (27%)
Query: 26 FDLSDALPDNE-NKKPTA--IPK-KPSAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNP 81
FDL+DAL D E KKP + PK KP + D+ G N PRP KP P P P
Sbjct: 25 FDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDS---GGNIYPRP----KPRPQPQP 77
Query: 82 -NHPSSSGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEG------------ 118
N +S G F+D D DG +GG G G S G S G
Sbjct: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGN 137
Query: 119 -------------EEADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFK 156
E ++ IV VVV + GA +S+ ++ CF+
Sbjct: 138 TYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFR 188
>gi|41352705 kinesin family member 3C [Homo sapiens]
Length = 793
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 100 SGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKL 153
SGG G GG GGG+ + +EA + +G V+ A+AG S+ I Y+ KL
Sbjct: 269 SGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKL 322
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 35 NENKKPTAIPKKPSAGDDFDLGDAV-VDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDA 93
N +K K DD L + DGE D + P N P+H +S G+ +
Sbjct: 366 NPSKTSNGHQSKSMLKDDLKLSSSEDSDGEQDCDKTMPRSTPGSNSEPSHHNSEGADNSR 425
Query: 94 DLADGVSGGEGKGGSDGGGSHRKEGEEADAP 124
D + SG E GSD EA+ P
Sbjct: 426 DDSSSHSGSESSSGSDSESESSSSDSEANEP 456
>gi|4758896 peroxisomal biogenesis factor 14 [Homo sapiens]
Length = 377
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 67 PRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPGV 126
P+ P+ P+ +P+P+ P++ S +D++ E S G H EG +
Sbjct: 236 PKIPSWQIPVKSPSPSSPAAVNHHSSSDISP--VSNESTSSSPGKEGHSPEGSTVTYHLL 293
Query: 127 IPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR 180
P G VV V G + + +++K KE+ E E D SH + VQR
Sbjct: 294 GPQEEGEGVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQR 347
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo
sapiens]
Length = 2603
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 68 RPPNPP--KPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEAD 122
+PP K N PSSS S SD+D + G GG G GG GG S EE D
Sbjct: 65 KPPQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGTSSNNSEEEED 121
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo
sapiens]
Length = 2352
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 68 RPPNPP--KPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEAD 122
+PP K N PSSS S SD+D + G GG G GG GG S EE D
Sbjct: 65 KPPQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGTSSNNSEEEED 121
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 121
GEN D P PP P P P P ADG G G GS GG + E EA
Sbjct: 1222 GENGDVGPMGPPGP---PGPRGPQGPNG------ADGPQGPPGSVGSVGGVGEKGEPGEA 1272
Query: 122 DAPGVIPGIVG 132
PG PG G
Sbjct: 1273 GNPGP-PGEAG 1282
Score = 35.8 bits (81), Expect = 0.022
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 37 NKKPTAIPKKPS-------AGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGS 89
N P P P AG D GD DG+ P PP P P P
Sbjct: 1319 NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1378
Query: 90 FSDADLADGVSGGEGKGGSDG-GGSHRKEGEEADA--PGV-----IPGIVG 132
+ A+ G G +G+ G++G G G + A PG IPG VG
Sbjct: 1379 AAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1429
Score = 31.2 bits (69), Expect = 0.53
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 21/105 (20%)
Query: 46 KPSAGDDFDLGDAVVDGENDDPRPPNPPKPM----------PNPNPNHPSSSGSFSDADL 95
K GDD G+ G DP PP P P + +P P G +A
Sbjct: 1308 KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA-- 1365
Query: 96 ADGVSGGEGKGGSDG-GGSHRKEGE-----EADAPGVIPGIVGAV 134
G G GK G G G+ ++GE EA A G PG G V
Sbjct: 1366 --GPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP-PGKTGPV 1407
Score = 28.5 bits (62), Expect = 3.4
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 56 GDAVVDGENDDPRP---PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDG 110
G+ G+ +P P P P P+ P P + ADG G GK G G
Sbjct: 697 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSG 754
Score = 28.1 bits (61), Expect = 4.5
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDG 110
GE PP P P+ P P AD G+ G +G+ G DG
Sbjct: 754 GEKGALGPPGPQGPIGYPGPR------GVKGADGVRGLKGSKGEKGEDG 796
Score = 28.1 bits (61), Expect = 4.5
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 121
GE P PP PP P ++G + A G G +G G DG R E
Sbjct: 994 GERGHPGPPGPP-----GEQGLPGAAGK----EGAKGDPGPQGISGKDGPAGLRGFPGER 1044
Query: 122 DAPGV--IPGIVG 132
PG PG+ G
Sbjct: 1045 GLPGAQGAPGLKG 1057
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 121
GEN D P PP P P P P ADG G G GS GG + E EA
Sbjct: 1171 GENGDVGPMGPPGP---PGPRGPQGPNG------ADGPQGPPGSVGSVGGVGEKGEPGEA 1221
Query: 122 DAPGVIPGIVG 132
PG PG G
Sbjct: 1222 GNPGP-PGEAG 1231
Score = 35.8 bits (81), Expect = 0.022
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 37 NKKPTAIPKKPS-------AGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGS 89
N P P P AG D GD DG+ P PP P P P
Sbjct: 1268 NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1327
Query: 90 FSDADLADGVSGGEGKGGSDG-GGSHRKEGEEADA--PGV-----IPGIVG 132
+ A+ G G +G+ G++G G G + A PG IPG VG
Sbjct: 1328 AAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1378
Score = 31.2 bits (69), Expect = 0.53
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 21/105 (20%)
Query: 46 KPSAGDDFDLGDAVVDGENDDPRPPNPPKPM----------PNPNPNHPSSSGSFSDADL 95
K GDD G+ G DP PP P P + +P P G +A
Sbjct: 1257 KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA-- 1314
Query: 96 ADGVSGGEGKGGSDG-GGSHRKEGE-----EADAPGVIPGIVGAV 134
G G GK G G G+ ++GE EA A G PG G V
Sbjct: 1315 --GPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP-PGKTGPV 1356
Score = 28.5 bits (62), Expect = 3.4
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 56 GDAVVDGENDDPRP---PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDG 110
G+ G+ +P P P P P+ P P + ADG G GK G G
Sbjct: 646 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSG 703
Score = 28.1 bits (61), Expect = 4.5
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDG 110
GE PP P P+ P P AD G+ G +G+ G DG
Sbjct: 703 GEKGALGPPGPQGPIGYPGPR------GVKGADGVRGLKGSKGEKGEDG 745
Score = 28.1 bits (61), Expect = 4.5
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 121
GE P PP PP P ++G + A G G +G G DG R E
Sbjct: 943 GERGHPGPPGPP-----GEQGLPGAAGK----EGAKGDPGPQGISGKDGPAGLRGFPGER 993
Query: 122 DAPGV--IPGIVG 132
PG PG+ G
Sbjct: 994 GLPGAQGAPGLKG 1006
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 121
GEN D P PP P P P P ADG G G GS GG + E EA
Sbjct: 1210 GENGDVGPMGPPGP---PGPRGPQGPNG------ADGPQGPPGSVGSVGGVGEKGEPGEA 1260
Query: 122 DAPGVIPGIVG 132
PG PG G
Sbjct: 1261 GNPGP-PGEAG 1270
Score = 35.8 bits (81), Expect = 0.022
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 37 NKKPTAIPKKPS-------AGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGS 89
N P P P AG D GD DG+ P PP P P P
Sbjct: 1307 NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1366
Query: 90 FSDADLADGVSGGEGKGGSDG-GGSHRKEGEEADA--PGV-----IPGIVG 132
+ A+ G G +G+ G++G G G + A PG IPG VG
Sbjct: 1367 AAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1417
Score = 31.2 bits (69), Expect = 0.53
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 21/105 (20%)
Query: 46 KPSAGDDFDLGDAVVDGENDDPRPPNPPKPM----------PNPNPNHPSSSGSFSDADL 95
K GDD G+ G DP PP P P + +P P G +A
Sbjct: 1296 KGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA-- 1353
Query: 96 ADGVSGGEGKGGSDG-GGSHRKEGE-----EADAPGVIPGIVGAV 134
G G GK G G G+ ++GE EA A G PG G V
Sbjct: 1354 --GPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP-PGKTGPV 1395
Score = 28.5 bits (62), Expect = 3.4
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 56 GDAVVDGENDDPRP---PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDG 110
G+ G+ +P P P P P+ P P + ADG G GK G G
Sbjct: 685 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSG 742
Score = 28.1 bits (61), Expect = 4.5
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDG 110
GE PP P P+ P P AD G+ G +G+ G DG
Sbjct: 742 GEKGALGPPGPQGPIGYPGPR------GVKGADGVRGLKGSKGEKGEDG 784
Score = 28.1 bits (61), Expect = 4.5
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEA 121
GE P PP PP P ++G + A G G +G G DG R E
Sbjct: 982 GERGHPGPPGPP-----GEQGLPGAAGK----EGAKGDPGPQGISGKDGPAGLRGFPGER 1032
Query: 122 DAPGV--IPGIVG 132
PG PG+ G
Sbjct: 1033 GLPGAQGAPGLKG 1045
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 37.7 bits (86), Expect = 0.006
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 48 SAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHP-SSSGSFSDADL--------ADG 98
S G D+G G+ P P P P+ +P P P GS D + +G
Sbjct: 568 SPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREG 627
Query: 99 VSGGEGKGGSDGGGSHRKEGEEAD-APGVIPGIVGAV 134
G G+ G G G + G + P PG+ G+V
Sbjct: 628 PMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSV 664
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 37.7 bits (86), Expect = 0.006
Identities = 43/128 (33%), Positives = 50/128 (39%), Gaps = 28/128 (21%)
Query: 6 ALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVVDGEND 65
AL LLL GL L AA G P E P P P D +DG+
Sbjct: 10 ALGLLLLGLC--LCAAQRG--------PPGEQGPPG--PPGPPGVPGID----GIDGDRG 53
Query: 66 DPRPPNPPKPMPNP-NPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAP 124
PP PP P P P P G+ ADG++G +G GS G + E P
Sbjct: 54 PKGPPGPPGPAGEPGKPGAPGKPGTPG----ADGLTGPDGSPGSIGSKGQKGE------P 103
Query: 125 GVIPGIVG 132
GV PG G
Sbjct: 104 GV-PGSRG 110
Score = 27.7 bits (60), Expect = 5.9
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 62 GENDDPRPPNPPKPMPN----------PNPNHPSSSGSFSDADLADGVSGGEGKGGSDGG 111
G P PP PP P PN P SG + G G +G+ G G
Sbjct: 142 GRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSG-YPGLPGMRGHKGAKGEIGEPGR 200
Query: 112 GSHRKEGEEAD 122
H+ GEE D
Sbjct: 201 QGHK--GEEGD 209
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 37.7 bits (86), Expect = 0.006
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 69 PPNPPKPMPNPNP-NHPSSSGSFSDADLADGVSGGEGKGGSDGG-GSHRKEGEEADAPGV 126
PP+PP+ +P P HP GS+S A + G +G G GG GS + A AP +
Sbjct: 276 PPHPPQALPCPPACRHPEKQGSYSPALPLQPLGGHKGTGYQAGGLGSPYLRQQAAQAPYI 335
Query: 127 IP 128
P
Sbjct: 336 PP 337
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 36.6 bits (83), Expect = 0.013
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 68 RPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAP 124
R P PP+ P + PS G L +G GG G+GG GGGS +EG P
Sbjct: 138 RRPGPPEEPPRELESVPSKLGE--PPPLGEG-GGGGGEGGGAGGGSGEREGGAPQPP 191
Score = 29.3 bits (64), Expect = 2.0
Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 24/133 (18%)
Query: 5 AALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVVDGEN 64
AA A L L G P+ +++P + P G+ G + E
Sbjct: 126 AAPAATLAALGGRRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREG 185
Query: 65 DDPRPPNPPK-------------------PMPNPNPNHPSSSGSFSDADLADGVSGGEGK 105
P+PP PP+ P+P+ + + + GV+GG
Sbjct: 186 GAPQPP-PPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGG--- 241
Query: 106 GGSDGGGSHRKEG 118
GS GGGS+ KEG
Sbjct: 242 -GSGGGGSYWKEG 253
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 36.6 bits (83), Expect = 0.013
Identities = 42/138 (30%), Positives = 51/138 (36%), Gaps = 19/138 (13%)
Query: 5 AALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVVDGEN 64
A LLL LLG L+AA LP P P KP G +DGE
Sbjct: 6 ACAPLLLLLLLGELLAAAGAQ---RVGLPGPPG--PPGPPGKP--------GQDGIDGEA 52
Query: 65 DDPRPPNPPKPMPNPN-PNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADA 123
P P PP P P P P +G DG++G +G G G R
Sbjct: 53 GPPGLPGPPGPKGAPGKPGKPGEAG-LPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGP 111
Query: 124 PGV----IPGIVGAVVVA 137
PG+ +PG G V+
Sbjct: 112 PGLGGKGLPGPPGEAGVS 129
Score = 29.6 bits (65), Expect = 1.5
Identities = 34/130 (26%), Positives = 42/130 (32%), Gaps = 19/130 (14%)
Query: 22 PDGGFDLS--DALPDNENKKPTAIPKKPSAGDDFDLGDAVVDGENDDPRPPNP------- 72
P+G DL P P K G + G+ DGE DP PP P
Sbjct: 166 PEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSV 225
Query: 73 ----PKPMPN-PNPNHPSSSGSFSDADLADGVSGGEGKGGSDG-GGSHRKEGEEAD---- 122
P+ + P P P G+ G GK G G G G + D
Sbjct: 226 GLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRP 285
Query: 123 APGVIPGIVG 132
P PG+ G
Sbjct: 286 GPKGTPGVAG 295
Score = 29.3 bits (64), Expect = 2.0
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 40 PTAIPKKPS-AGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADG 98
P IP P AGD + G G D P P P PS D +G
Sbjct: 254 PPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKG---TPGVAGPSGEPGMPGKDGQNG 310
Query: 99 VSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVG 132
V G +G+ G G + GE+ P +PG+ G
Sbjct: 311 VPGLDGQKGE--AGRNGAPGEK--GPNGLPGLPG 340
Score = 28.5 bits (62), Expect = 3.4
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 29/100 (29%)
Query: 62 GENDDPRPPNPPKPMPNPNPNHP----------------SSSGSFSDADLA----DGVSG 101
G P PP PP + +P P + G D A DG G
Sbjct: 557 GPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEG 616
Query: 102 GEGKGGSDGGGSHRKEGEEADAPGV--------IPGIVGA 133
+G G G K+G++ APG +PG +GA
Sbjct: 617 DQGPQGPQGVPGTSKDGQDG-APGEPGPPGDPGLPGAIGA 655
Score = 27.7 bits (60), Expect = 5.9
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 67 PRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHR-------KEGE 119
P PP PP P +P ++ + G G G G G ++ K+GE
Sbjct: 150 PGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGE 209
Query: 120 EAD----APGVIPGIVG 132
+ D P +PG VG
Sbjct: 210 KGDPGPPGPAGLPGSVG 226
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 36.6 bits (83), Expect = 0.013
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 70 PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGS-HRKEGEEADAPGVIP 128
P P+ N + +P+S + G GG G GG GGGS G A A G
Sbjct: 219 PGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGA 278
Query: 129 GIVGAVVVAVAGA 141
G V A A A A
Sbjct: 279 GAVAAAAAAAAAA 291
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 36.6 bits (83), Expect = 0.013
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 70 PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGS-HRKEGEEADAPGVIP 128
P P+ N + +P+S + G GG G GG GGGS G A A G
Sbjct: 219 PGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGA 278
Query: 129 GIVGAVVVAVAGA 141
G V A A A A
Sbjct: 279 GAVAAAAAAAAAA 291
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 36.6 bits (83), Expect = 0.013
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 70 PNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGS-HRKEGEEADAPGVIP 128
P P+ N + +P+S + G GG G GG GGGS G A A G
Sbjct: 219 PGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGA 278
Query: 129 GIVGAVVVAVAGA 141
G V A A A A
Sbjct: 279 GAVAAAAAAAAAA 291
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 36.6 bits (83), Expect = 0.013
Identities = 17/57 (29%), Positives = 22/57 (38%)
Query: 32 LPDNENKKPTAIPKKPSAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSG 88
+P+ E P +P G L + D RP PP P P P+P P G
Sbjct: 500 VPEQEEASTPMDPSRPLPGSQLSLSSPGSTEDEDTGRPLPPPHPQPPPHPQPPDLDG 556
>gi|222831660 family with sequence similarity 171, member A2 [Homo
sapiens]
Length = 826
Score = 36.2 bits (82), Expect = 0.017
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 56 GDAVVDGENDDPRPPN-----PPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDG 110
G+A G D+P PP P + P P+P P G G G G GG +G
Sbjct: 551 GEAGAAGVGDEPAPPEGTAPGPARAFPQPDPQRPQMPGH-------SGPGGEGGGGGGEG 603
Query: 111 GGSHR 115
G+ R
Sbjct: 604 WGAGR 608
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 36.2 bits (82), Expect = 0.017
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 60 VDGENDDPRPPNPPKPMPNP-NPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEG 118
+DG+ PP PP P P P P G+ ADG++G +G GS G + E
Sbjct: 291 IDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPG----ADGLTGPDGSPGSIGSKGQKGE- 345
Query: 119 EEADAPGVIPGIVG 132
PGV PG G
Sbjct: 346 -----PGV-PGSRG 353
Score = 27.7 bits (60), Expect = 5.9
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 62 GENDDPRPPNPPKPMPN----------PNPNHPSSSGSFSDADLADGVSGGEGKGGSDGG 111
G P PP PP P PN P SG + G G +G+ G G
Sbjct: 385 GRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSG-YPGLPGMRGHKGAKGEIGEPGR 443
Query: 112 GSHRKEGEEAD 122
H+ GEE D
Sbjct: 444 QGHK--GEEGD 452
>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
Length = 609
Score = 36.2 bits (82), Expect = 0.017
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 33 PDNENKKPTAIPKKPSAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSD 92
P + P P P+A D D G+A P PP+ + P P P+ S +GS
Sbjct: 512 PQALRRPPGPFPAAPAAPDGADPGEA--------PTPPSSAQRSPGPRPSAHSHAGS--- 560
Query: 93 ADLADGVSGGEGKGG----SDGGGS 113
L G+S G+ G + GGGS
Sbjct: 561 --LRPGLSASWGEPGGLRAAGGGGS 583
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 35.8 bits (81), Expect = 0.022
Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 31 ALPDNENKKPTAI-------PKKPSAGDDFDLGDAVVDGENDDPRPPNPPKPMP-NPNPN 82
A P EN+K PK+P+ G + +A E PR P P P P P P
Sbjct: 69 ARPPRENRKRAVPARAARGPPKRPAGGQTGGV-EAASGEERSQPRRPRRPPPAPRRPRPA 127
Query: 83 HPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPG 125
+ A L GG D GGS G A G
Sbjct: 128 PGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGG 170
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 35.8 bits (81), Expect = 0.022
Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 31 ALPDNENKKPTAI-------PKKPSAGDDFDLGDAVVDGENDDPRPPNPPKPMP-NPNPN 82
A P EN+K PK+P+ G + +A E PR P P P P P P
Sbjct: 69 ARPPRENRKRAVPARAARGPPKRPAGGQTGGV-EAASGEERSQPRRPRRPPPAPRRPRPA 127
Query: 83 HPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEEADAPG 125
+ A L GG D GGS G A G
Sbjct: 128 PGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGG 170
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,377,364
Number of Sequences: 37866
Number of extensions: 608226
Number of successful extensions: 8309
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 384
Number of HSP's that attempted gapping in prelim test: 6160
Number of HSP's gapped (non-prelim): 1975
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.