Guide to the Human Genome
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Name: C20orf151 Sequence: fasta or formatted (664aa) NCBI GI: 24308394
Description:

hypothetical protein LOC140893

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         59           3
 C cysteine            1.2          8           1
 D aspartate           4.2         28           1
 E glutamate           9.8         65           2
 F phenylalanine       0.8          5           1
 G glycine             8.1         54           2
 H histidine           2.9         19           1
 I isoleucine          1.4          9           1
 K lysine              4.4         29           2
 L leucine            10.8         72           3
 M methionine          1.4          9           1
 N asparagine          2.4         16           1
 P proline            12.7         84           3
 Q glutamine           5.3         35           3
 R arginine            8.1         54           2
 S serine              9.3         62           2
 T threonine           5.4         36           2
 V valine              2.3         15           2
 W tryptophan          0.6          4           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC140893 
RBBP8                 0.085   retinoblastoma binding protein 8 isoform b 
RBBP8                 0.085   retinoblastoma binding protein 8 isoform a 
RBBP8                 0.085   retinoblastoma binding protein 8 isoform a 
SRRM1                 0.038   serine/arginine repetitive matrix 1 
NACA                  0.037   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.035   PREDICTED: hypothetical protein LOC80164 
SETD1B                0.031   SET domain containing 1B 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
PCLO                  0.028   piccolo isoform 2 
PCLO                  0.028   piccolo isoform 1 
C2orf55               0.028   hypothetical protein LOC343990 
SRRM2                 0.026   splicing coactivator subunit SRm300 
ZNF469                0.026   zinc finger protein 469 
NCOR2                 0.025   nuclear receptor co-repressor 2 isoform 2 
GLTSCR1               0.024   glioma tumor suppressor candidate region gene 1 [Ho...
BSN                   0.023   bassoon protein 
MAP1S                 0.023   BPY2 interacting protein 1 
TNRC18                0.023   trinucleotide repeat containing 18 
MYLK3                 0.023   myosin light chain kinase 3 
BAHCC1                0.023   BAH domain and coiled-coil containing 1 
NCOR2                 0.023   nuclear receptor co-repressor 2 isoform 1 
SCAF1                 0.023   SR-related CTD-associated factor 1 
PRG4                  0.022   proteoglycan 4 isoform D 
PRG4                  0.022   proteoglycan 4 isoform C 
PRG4                  0.022   proteoglycan 4 isoform B 
PRG4                  0.022   proteoglycan 4 isoform A 
MLL2                  0.022   myeloid/lymphoid or mixed-lineage leukemia 2 
KIAA1522              0.022   hypothetical protein LOC57648 
PRB4                  0.022   proline-rich protein BstNI subfamily 4 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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