Guide to the Human Genome
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Name: MBD4 Sequence: fasta or formatted (580aa) NCBI GI: 4505121
Description:

methyl-CpG binding domain protein 4

Referenced in:

DNA Methylation
DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         25           2
 C cysteine            2.4         14           1
 D aspartate           5.3         31           2
 E glutamate           8.6         50           2
 F phenylalanine       4.1         24           1
 G glycine             5.3         31           1
 H histidine           2.1         12           1
 I isoleucine          3.8         22           2
 K lysine             10.5         61           3
 L leucine             8.6         50           3
 M methionine          1.4          8           2
 N asparagine          4.3         25           2
 P proline             4.7         27           2
 Q glutamine           2.9         17           1
 R arginine            6.0         35           2
 S serine             10.5         61           4
 T threonine           5.9         34           2
 V valine              5.2         30           2
 W tryptophan          1.7         10           1
 Y tyrosine            2.2         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   methyl-CpG binding domain protein 4 
MECP2                 0.045   methyl CpG binding protein 2 isoform 2 
MECP2                 0.045   methyl CpG binding protein 2 isoform 1 
MBD3                  0.022   methyl-CpG binding domain protein 3 
MBD2                  0.021   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.021   methyl-CpG binding domain protein 2 isoform 1 
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform 2 
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform 4 
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform PCM1 [Ho...
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform 1 
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform 3 [Homo...
CYLC1                 0.011   cylicin, basic protein of sperm head cytoskeleton 1...
BAZ2B                 0.010   bromodomain adjacent to zinc finger domain, 2B [Homo...
DPCR1                 0.009   diffuse panbronchiolitis critical region 1 protein ...
FAM133A               0.008   hypothetical protein LOC286499 
LOC100294236          0.008   PREDICTED: similar to diffuse panbronchiolitis crit...
PPP1R3A               0.008   protein phosphatase 1, regulatory (inhibitor) subun...
PCLO                  0.008   piccolo isoform 2 
PCLO                  0.008   piccolo isoform 1 
EFCAB5                0.007   EF-hand calcium binding domain 5 isoform b 
EFCAB5                0.007   EF-hand calcium binding domain 5 isoform a 
CCDC39                0.007   coiled-coil domain containing 39 
BRCA2                 0.006   breast cancer 2, early onset 
SRRT                  0.006   arsenate resistance protein 2 isoform d 
SRRT                  0.006   arsenate resistance protein 2 isoform a 
HNRNPD                0.006   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.006   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPD                0.006   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.006   heterogeneous nuclear ribonucleoprotein D isoform d ...
PRPF4B                0.006   serine/threonine-protein kinase PRP4K 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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