LDB2 28949

Name: LDB2	Sequence: fasta or formatted (373aa)		NCBI GI: 4504971
Description: LIM domain binding 2 isoform a		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [331aa] LIM domain binding 2 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.3 16 2 C cysteine 1.9 7 1 D aspartate 5.9 22 2 E glutamate 6.2 23 2 F phenylalanine 4.6 17 2 G glycine 4.3 16 2 H histidine 2.1 8 1 I isoleucine 3.2 12 1 K lysine 5.1 19 3 L leucine 8.0 30 1 M methionine 3.8 14 1 N asparagine 5.6 21 2 P proline 7.0 26 3 Q glutamine 4.6 17 1 R arginine 6.4 24 2 S serine 8.6 32 2 T threonine 9.7 36 2 V valine 3.8 14 2 W tryptophan 1.3 5 2 Y tyrosine 3.8 14 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM domain binding 2 isoform a LDB2 0.796 LIM domain binding 2 isoform b LDB1 0.758 LIM domain binding 1 isoform 1 LDB1 0.758 LIM domain binding 1 isoform 3 SRRM2 0.017 splicing coactivator subunit SRm300 NOLC1 0.012 nucleolar and coiled-body phosphoprotein 1 KIAA1486 0.011 hypothetical protein LOC57624 LOC100293817 0.011 PREDICTED: similar to hCG1811893 ARL6IP4 0.011 SRp25 nuclear protein isoform 3 SPEN 0.009 spen homolog, transcriptional regulator ALPK3 0.009 alpha-kinase 3 PER1 0.009 period 1 CNOT3 0.009 CCR4-NOT transcription complex, subunit 3 MLLT1 0.008 myeloid/lymphoid or mixed-lineage leukemia (trithora... PRG4 0.008 proteoglycan 4 isoform D PRG4 0.008 proteoglycan 4 isoform C PRG4 0.008 proteoglycan 4 isoform B PRG4 0.008 proteoglycan 4 isoform A SYNE1 0.008 spectrin repeat containing, nuclear envelope 1 isofo... SYNE1 0.008 spectrin repeat containing, nuclear envelope 1 isof... PHC2 0.008 polyhomeotic-like 2 isoform a NKX6-1 0.007 NK6 transcription factor related, locus 1 INO80C 0.007 Ies6-similar protein isoform 1 ZNF318 0.007 zinc finger protein 318 NAP1L3 0.007 nucleosome assembly protein 1-like 3 TNRC6B 0.007 trinucleotide repeat containing 6B isoform 2 TNRC6B 0.007 trinucleotide repeat containing 6B isoform 1 ATRX 0.007 transcriptional regulator ATRX isoform 2 ATRX 0.007 transcriptional regulator ATRX isoform 1 RNF111 0.007 ring finger protein 111 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.