LDB1 6753

Name: LDB1	Sequence: fasta or formatted (411aa)		NCBI GI: 164663816
Description: LIM domain binding 1 isoform 1		Referenced in: LIM Domain Proteins Additional Genes in Development Ring Finger Proteins
Other entries for this name: alt prot [375aa] LIM domain binding 1 isoform 3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.1 17 2 C cysteine 2.7 11 1 D aspartate 5.4 22 2 E glutamate 6.1 25 2 F phenylalanine 5.1 21 2 G glycine 6.6 27 3 H histidine 2.2 9 1 I isoleucine 3.4 14 1 K lysine 5.1 21 3 L leucine 7.8 32 1 M methionine 4.4 18 2 N asparagine 5.1 21 2 P proline 8.0 33 2 Q glutamine 4.6 19 2 R arginine 5.8 24 2 S serine 9.2 38 2 T threonine 6.8 28 2 V valine 3.2 13 2 W tryptophan 1.5 6 2 Y tyrosine 2.9 12 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM domain binding 1 isoform 1 LDB1 0.902 LIM domain binding 1 isoform 3 LDB2 0.678 LIM domain binding 2 isoform a LDB2 0.519 LIM domain binding 2 isoform b PPHLN1 0.010 periphilin 1 isoform 7 PPHLN1 0.010 periphilin 1 isoform 1 PPHLN1 0.010 periphilin 1 isoform 3 PPHLN1 0.010 periphilin 1 isoform 2 IL16 0.010 interleukin 16 isoform 2 INO80C 0.010 Ies6-similar protein isoform 1 EIF4G3 0.008 eukaryotic translation initiation factor 4 gamma, 3 ... SRRM2 0.008 splicing coactivator subunit SRm300 CNOT3 0.008 CCR4-NOT transcription complex, subunit 3 ARL6IP4 0.007 SRp25 nuclear protein isoform 3 FLJ10357 0.007 hypothetical protein LOC55701 LOC100292793 0.007 PREDICTED: hypothetical protein LOC100290071 0.007 PREDICTED: hypothetical protein XP_002347957 LOC100287600 0.007 PREDICTED: hypothetical protein XP_002343679 PRR12 0.007 proline rich 12 MIER1 0.006 mesoderm induction early response 1 isoform g [Homo... MIER1 0.006 mesoderm induction early response 1 isoform i [Homo... MIER1 0.006 mesoderm induction early response 1 isoform h [Homo... MIER1 0.006 mesoderm induction early response 1 isoform a [Homo... MIER1 0.006 mesoderm induction early response 1 isoform f [Homo... MIER1 0.006 mesoderm induction early response 1 isoform e [Homo... MIER1 0.006 mesoderm induction early response 1 isoform d [Homo... MIER1 0.006 mesoderm induction early response 1 isoform c [Homo... MIER1 0.006 mesoderm induction early response 1 isoform b [Homo... MIER1 0.006 mesoderm induction early response 1 isoform a [Homo... CBFA2T2 0.006 core-binding factor, runt domain, alpha subunit 2; t... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.