LDB1 28948

Name: LDB1	Sequence: fasta or formatted (375aa)		NCBI GI: 4504969
Description: LIM domain binding 1 isoform 3		Referenced in: LIM Domain Proteins Additional Genes in Development Ring Finger Proteins
Other entries for this name: alt prot [411aa] LIM domain binding 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.0 15 2 C cysteine 2.1 8 1 D aspartate 5.9 22 2 E glutamate 6.4 24 2 F phenylalanine 4.8 18 2 G glycine 6.1 23 3 H histidine 2.1 8 1 I isoleucine 3.7 14 1 K lysine 4.8 18 3 L leucine 8.3 31 1 M methionine 4.5 17 2 N asparagine 5.1 19 2 P proline 6.9 26 2 Q glutamine 5.1 19 2 R arginine 6.4 24 2 S serine 8.8 33 2 T threonine 7.2 27 2 V valine 3.2 12 2 W tryptophan 1.6 6 2 Y tyrosine 2.9 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM domain binding 1 isoform 3 LDB1 1.000 LIM domain binding 1 isoform 1 LDB2 0.751 LIM domain binding 2 isoform a LDB2 0.575 LIM domain binding 2 isoform b IL16 0.011 interleukin 16 isoform 2 INO80C 0.011 Ies6-similar protein isoform 1 EIF4G3 0.009 eukaryotic translation initiation factor 4 gamma, 3 ... SRRM2 0.009 splicing coactivator subunit SRm300 CNOT3 0.009 CCR4-NOT transcription complex, subunit 3 ARL6IP4 0.008 SRp25 nuclear protein isoform 3 FLJ10357 0.008 hypothetical protein LOC55701 PRR12 0.008 proline rich 12 MIER1 0.007 mesoderm induction early response 1 isoform g [Homo... MIER1 0.007 mesoderm induction early response 1 isoform i [Homo... MIER1 0.007 mesoderm induction early response 1 isoform h [Homo... MIER1 0.007 mesoderm induction early response 1 isoform a [Homo... MIER1 0.007 mesoderm induction early response 1 isoform f [Homo... MIER1 0.007 mesoderm induction early response 1 isoform e [Homo... MIER1 0.007 mesoderm induction early response 1 isoform d [Homo... MIER1 0.007 mesoderm induction early response 1 isoform c [Homo... MIER1 0.007 mesoderm induction early response 1 isoform b [Homo... MIER1 0.007 mesoderm induction early response 1 isoform a [Homo... PRDM2 0.007 retinoblastoma protein-binding zinc finger protein i... PRDM2 0.007 retinoblastoma protein-binding zinc finger protein i... PRDM2 0.007 retinoblastoma protein-binding zinc finger protein i... MUC21 0.007 mucin 21 BTBD10 0.007 K+ channel tetramerization protein SRRM1 0.007 serine/arginine repetitive matrix 1 ARHGAP24 0.007 Rho GTPase activating protein 24 isoform 3 ARHGAP24 0.007 Rho GTPase activating protein 24 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.