Guide to the Human Genome
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Name: PHC2 Sequence: fasta or formatted (858aa) NCBI GI: 37595528
Description:

polyhomeotic-like 2 isoform a

Referenced in:

Stem Cells and Early Development

Other entries for this name:
alt prot [323aa] polyhomeotic-like 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         92           4
 C cysteine            1.4         12           1
 D aspartate           2.4         21           2
 E glutamate           4.2         36           2
 F phenylalanine       1.5         13           1
 G glycine             6.6         57           2
 H histidine           3.1         27           2
 I isoleucine          2.9         25           1
 K lysine              3.8         33           3
 L leucine             8.6         74           4
 M methionine          2.1         18           1
 N asparagine          2.9         25           2
 P proline            11.1         95           3
 Q glutamine          10.4         89           4
 R arginine            4.0         34           3
 S serine             11.3         97           4
 T threonine           6.2         53           4
 V valine              5.0         43           1
 W tryptophan          0.2          2           1
 Y tyrosine            1.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polyhomeotic-like 2 isoform a 
PHC2                  0.370   polyhomeotic-like 2 isoform b 
PHC1                  0.215   polyhomeotic 1-like 
PHC3                  0.154   polyhomeotic like 3 
SAMD7                 0.033   sterile alpha motif domain containing 7 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
KIAA0754              0.030   hypothetical protein LOC643314 
L3MBTL4               0.029   l(3)mbt-like 4 
NACA                  0.029   nascent polypeptide-associated complex alpha subuni...
L3MBTL3               0.029   l(3)mbt-like 3 isoform b 
L3MBTL3               0.029   l(3)mbt-like 3 isoform a 
POU6F2                0.029   POU domain, class 6, transcription factor 2 
RAPH1                 0.029   Ras association and pleckstrin homology domains 1 is...
SAMD11                0.029   sterile alpha motif domain containing 11 
MLL2                  0.028   myeloid/lymphoid or mixed-lineage leukemia 2 
AAK1                  0.026   AP2 associated kinase 1 
GLTSCR1               0.026   glioma tumor suppressor candidate region gene 1 [Ho...
FLJ22184              0.025   PREDICTED: hypothetical protein LOC80164 
CIZ1                  0.025   CDKN1A interacting zinc finger protein 1 isoform 3 ...
SRCAP                 0.024   Snf2-related CBP activator protein 
SCMH1                 0.024   sex comb on midleg 1 isoform 1 
SCMH1                 0.024   sex comb on midleg 1 isoform 2 
ARID1A                0.023   AT rich interactive domain 1A isoform a 
ARID1A                0.023   AT rich interactive domain 1A isoform b 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
SFMBT1                0.023   Scm-like with four mbt domains 1 
SFMBT1                0.023   Scm-like with four mbt domains 1 
SFMBT1                0.023   Scm-like with four mbt domains 1 
SFPQ                  0.023   splicing factor proline/glutamine rich (polypyrimidin...
TAF4                  0.023   TBP-associated factor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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