LDB2 11188

Name: LDB2	Sequence: fasta or formatted (331aa)		NCBI GI: 195546926
Description: LIM domain binding 2 isoform b		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [373aa] LIM domain binding 2 isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.9 13 2 C cysteine 2.7 9 1 D aspartate 5.1 17 2 E glutamate 4.5 15 1 F phenylalanine 4.8 16 2 G glycine 4.5 15 2 H histidine 3.0 10 1 I isoleucine 3.6 12 1 K lysine 5.7 19 3 L leucine 8.8 29 1 M methionine 3.3 11 1 N asparagine 4.5 15 2 P proline 6.3 21 2 Q glutamine 4.2 14 1 R arginine 6.9 23 2 S serine 9.1 30 2 T threonine 10.0 33 2 V valine 3.6 12 1 W tryptophan 1.2 4 2 Y tyrosine 3.9 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM domain binding 2 isoform b LDB2 0.896 LIM domain binding 2 isoform a LDB1 0.654 LIM domain binding 1 isoform 1 LDB1 0.654 LIM domain binding 1 isoform 3 SRRM2 0.020 splicing coactivator subunit SRm300 CCDC49 0.015 coiled-coil domain containing 49 KIAA1486 0.012 hypothetical protein LOC57624 LOC100293817 0.012 PREDICTED: similar to hCG1811893 ANKRD12 0.012 ankyrin repeat domain 12 isoform 2 ANKRD12 0.012 ankyrin repeat domain 12 isoform 1 ARL6IP4 0.012 SRp25 nuclear protein isoform 3 SPEN 0.011 spen homolog, transcriptional regulator PACS1 0.011 phosphofurin acidic cluster sorting protein 1 SYNE1 0.009 spectrin repeat containing, nuclear envelope 1 isofo... SYNE1 0.009 spectrin repeat containing, nuclear envelope 1 isof... GATA5 0.009 GATA binding protein 5 UBQLN1 0.008 ubiquilin 1 isoform 2 UBQLN1 0.008 ubiquilin 1 isoform 1 ATXN7L1 0.008 ataxin 7-like 1 isoform 1 ATXN7L1 0.008 ataxin 7-like 1 isoform 3 ZNF318 0.008 zinc finger protein 318 CHD9 0.008 chromodomain helicase DNA binding protein 9 RNF111 0.008 ring finger protein 111 AFF4 0.008 ALL1 fused gene from 5q31 SRRM1 0.008 serine/arginine repetitive matrix 1 SETD5 0.008 SET domain containing 5 LOC643355 0.008 PREDICTED: hypothetical protein LOC643355 0.008 PREDICTED: hypothetical protein KIF18A 0.008 kinesin family member 18A PPM1H 0.008 protein phosphatase 1H (PP2C domain containing) [Ho... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.