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Search of human proteins with 4504155
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
(107 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens] 209 4e-55
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens] 187 2e-48
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens] 186 3e-48
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi... 89 8e-19
gi|4505981 pro-platelet basic protein precursor [Homo sapiens] 86 5e-18
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota... 80 3e-16
gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4) ... 75 9e-15
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens] 72 7e-14
gi|10834978 interleukin 8 precursor [Homo sapiens] 72 7e-14
gi|4505735 platelet factor 4 variant 1 [Homo sapiens] 69 1e-12
gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens] 59 1e-09
gi|20149565 small inducible cytokine B14 precursor [Homo sapiens] 51 2e-07
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens] 50 5e-07
gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 45 2e-05
gi|4885589 small inducible cytokine B11 precursor [Homo sapiens] 43 5e-05
gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac... 43 6e-05
gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 42 1e-04
gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 42 1e-04
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 32 0.11
gi|5174671 chemokine (C-C motif) ligand 26 precursor [Homo sapiens] 31 0.25
gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Hom... 31 0.25
gi|4506831 small inducible cytokine A18 precursor [Homo sapiens] 31 0.25
gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Hom... 31 0.25
gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Hom... 30 0.32
gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Hom... 30 0.32
gi|14589961 chemokine (C-C motif) ligand 14 isoform 1 precursor ... 28 1.2
gi|4759226 transforming growth factor, beta receptor I isoform 1... 28 1.6
gi|195963412 transforming growth factor, beta receptor I isoform... 28 1.6
gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo sap... 28 1.6
gi|14589959 chemokine (C-C motif) ligand 14 isoform 2 precursor ... 27 2.7
>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
Length = 107
Score = 209 bits (532), Expect = 4e-55
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV 60
MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
Sbjct: 1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV 60
Query: 61 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 107
KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
Sbjct: 61 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 107
>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
Length = 107
Score = 187 bits (475), Expect = 2e-48
Identities = 96/107 (89%), Positives = 100/107 (93%)
Query: 1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV 60
MARA LSAAPSNPRLLRVALLLLLLVAA RRAAGA +ATELRCQCLQTLQGIH KNIQSV
Sbjct: 1 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSV 60
Query: 61 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 107
VKSPGPHCAQTEVIATLKNG+KACLNPASP+VKKIIEKML + KSN
Sbjct: 61 NVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN 107
>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
Length = 107
Score = 186 bits (473), Expect = 3e-48
Identities = 94/107 (87%), Positives = 100/107 (93%)
Query: 1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV 60
MA ATLSAAPSNPRLLRVALLLLLLVAASRRAAGA + TELRCQCLQTLQGIHLKNIQSV
Sbjct: 1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV 60
Query: 61 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 107
V+SPGPHCAQTEVIATLKNG+KACLNPASPMV+KIIEK+L G +N
Sbjct: 61 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 107
>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
sapiens]
Length = 114
Score = 89.0 bits (219), Expect = 8e-19
Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 2 ARATLSAAPSNPRLLRVALLLLLLVAASRRAAG--APLATELRCQCLQTLQGIHLKNIQS 59
+RA PS+ + LLLLL +AG A + ELRC CLQT QG+H K I +
Sbjct: 6 SRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISN 65
Query: 60 VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNG 104
++V + GP C++ EV+A+LKNG++ CL+P +P +KK+I+K+L G
Sbjct: 66 LQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGG 110
>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
Length = 128
Score = 86.3 bits (212), Expect = 5e-18
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 16/107 (14%)
Query: 16 LRVALLLLLLVAA----------------SRRAAGAPLATELRCQCLQTLQGIHLKNIQS 59
L+V LLL LL+ A + + L ELRC C++T GIH KNIQS
Sbjct: 20 LQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQS 79
Query: 60 VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKS 106
++V G HC Q EVIATLK+G+K CL+P +P +KKI++K L +S
Sbjct: 80 LEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDES 126
>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
Length = 114
Score = 80.5 bits (197), Expect = 3e-16
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 2 ARATLSAAPSNPRLLRVALLLLLLVAASRRAAG--APLATELRCQCLQTLQGIHLKNIQS 59
+RA PS +ALLLLL +AG + + TELRC CL+ ++ K I
Sbjct: 6 SRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGK 65
Query: 60 VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNG 104
++V GP C++ EV+A+LKNG++ CL+P +P +KK+I+K+L +G
Sbjct: 66 LQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSG 110
>gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4)
[Homo sapiens]
Length = 101
Score = 75.5 bits (184), Expect = 9e-15
Identities = 41/93 (44%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 11 SNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCA 70
S P LL + LLLL LV A +A A +L+C C++T + ++I S++V GPHC
Sbjct: 10 SRPGLLFLGLLLLPLVVAFA-SAEAEEDGDLQCLCVKTTSQVRPRHITSLEVIKAGPHCP 68
Query: 71 QTEVIATLKNGQKACLNPASPMVKKIIEKMLKN 103
++IATLKNG+K CL+ +P+ KKII+K+L++
Sbjct: 69 TAQLIATLKNGRKICLDLQAPLYKKIIKKLLES 101
>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
Length = 125
Score = 72.4 bits (176), Expect = 7e-14
Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
Query: 15 LLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQG-IHLKNIQSVKVKSPGPHCAQTE 73
L + ++LL+L+ G P+ + RC C+ T QG IHL++++ +K +P P C + E
Sbjct: 7 LFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIE 62
Query: 74 VIATLKNGQKACLNPASPMVKKIIEKMLK 102
+IATLKNG + CLNP S VK++I+K K
Sbjct: 63 IIATLKNGVQTCLNPDSADVKELIKKWEK 91
>gi|10834978 interleukin 8 precursor [Homo sapiens]
Length = 99
Score = 72.4 bits (176), Expect = 7e-14
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Query: 16 LRVALLLLLLVAASRRAAGAPL---ATELRCQCLQTL-QGIHLKNIQSVKVKSPGPHCAQ 71
L VALL L++A+ GA L A ELRCQC++T + H K I+ ++V GPHCA
Sbjct: 5 LAVALLAAFLISAAL-CEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCAN 63
Query: 72 TEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 107
TE+I L +G++ CL+P V++++EK LK +++
Sbjct: 64 TEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 99
>gi|4505735 platelet factor 4 variant 1 [Homo sapiens]
Length = 104
Score = 68.6 bits (166), Expect = 1e-12
Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Query: 2 ARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVK 61
AR+ L+ A + +L +ALLLL +V A RA A +L+C C++T + ++I S++
Sbjct: 5 ARSRLTRA-TRQEMLFLALLLLPVVVAFARAE-AEEDGDLQCLCVKTTSQVRPRHITSLE 62
Query: 62 VKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKN 103
V GPHC ++IATLKNG+K CL+ + + KKII++ L++
Sbjct: 63 VIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES 104
>gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens]
Length = 126
Score = 58.5 bits (140), Expect = 1e-09
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 17/120 (14%)
Query: 3 RATLSAAPSNP-RLLRVALLLLLLVAA--------SRRAAG----APLATELRCQCLQTL 49
+AT S + P L+V LLL LL+ A S+R G + L EL C C+++
Sbjct: 6 KATPSCNSARPFHALQVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSA 65
Query: 50 QGIHLKNIQS---VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKS 106
GIH NI + + S P C + +VIA LK+G+K L+P +P +KKI++KML+ S
Sbjct: 66 SGIHPSNIIPNIHIYLLSGAP-CNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLEGDGS 124
>gi|20149565 small inducible cytokine B14 precursor [Homo sapiens]
Length = 111
Score = 51.2 bits (121), Expect = 2e-07
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 8 AAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGP 67
A P + RLL ALLLLLL + R G+ +C+C + I +++ +++K P
Sbjct: 8 APPVSMRLLAAALLLLLLALYTARVDGS------KCKCSRKGPKIRYSDVKKLEMKPKYP 61
Query: 68 HCAQTEVIATLKN-----GQKACLNPASPMVKKIIE 98
HC + VI T K+ GQ+ CL+P K+ I+
Sbjct: 62 HCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIK 97
>gi|149999382 small inducible cytokine B10 precursor [Homo sapiens]
Length = 98
Score = 49.7 bits (117), Expect = 5e-07
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 20 LLLLLLVAASRRAAGAPLATELRCQCLQ-TLQGIHLKNIQSVKVKSPGPHCAQTEVIATL 78
L+ L+ G PL+ +RC C+ + Q ++ ++++ +++ C + E+IAT+
Sbjct: 7 LICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRVEIIATM 66
Query: 79 KN-GQKACLNPASPMVKKIIEKMLK 102
K G+K CLNP S +K +++ + K
Sbjct: 67 KKKGEKRCLNPESKAIKNLLKAVSK 91
>gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform gamma [Homo sapiens]
Length = 119
Score = 44.7 bits (104), Expect = 2e-05
Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 17 RVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIA 76
+V ++L+L++ A + G P++ RC C + N++ +K+ + P+CA +++A
Sbjct: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
Query: 77 TLKNGQK-ACLNPASPMVKKIIEKMLKNGK 105
LKN + C++P +++ +EK L G+
Sbjct: 62 RLKNNNRQVCIDPKLKWIQEYLEKALNKGR 91
>gi|4885589 small inducible cytokine B11 precursor [Homo sapiens]
Length = 94
Score = 43.1 bits (100), Expect = 5e-05
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 21 LLLLLVAASRRAAGAPLATELRCQCLQT-LQGIHLKNIQSVKVKSPGPHCAQTEVIATLK 79
+ L ++ + G P+ RC C+ ++ + + +I+ + P +C + EVI TLK
Sbjct: 8 IALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLK 67
Query: 80 -NGQKACLNPASPMVKKIIEKM 100
N + CLNP S + II+K+
Sbjct: 68 ENKGQRCLNPKSKQARLIIKKV 89
>gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell
chemoattractant) [Homo sapiens]
Length = 109
Score = 42.7 bits (99), Expect = 6e-05
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 14 RLLRVALLLLLLVAASRRAAGA--PLATELRCQCLQTLQG-IHLKNIQSVKVKSPGPHCA 70
+ + +LLL+LLV++ G T LRC+C+Q I + I +++ G C
Sbjct: 2 KFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCP 61
Query: 71 QTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKS 106
+ E+I KN C++P + +++++E + K S
Sbjct: 62 RKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSS 97
>gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform beta [Homo sapiens]
Length = 93
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 17 RVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIA 76
+V ++L+L++ A + G P++ RC C + N++ +K+ + P+CA +++A
Sbjct: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
Query: 77 TLKNGQK-ACLNPASPMVKKIIEKML 101
LKN + C++P +++ +EK L
Sbjct: 62 RLKNNNRQVCIDPKLKWIQEYLEKAL 87
>gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform alpha [Homo sapiens]
Length = 89
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 17 RVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIA 76
+V ++L+L++ A + G P++ RC C + N++ +K+ + P+CA +++A
Sbjct: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
Query: 77 TLKNGQK-ACLNPASPMVKKIIEKML 101
LKN + C++P +++ +EK L
Sbjct: 62 RLKNNNRQVCIDPKLKWIQEYLEKAL 87
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 1 MARATLSAAPSNPRLLRVALLLLLLVAASRRA 32
+A A L+AAP+ PRL VA +L+L+ +A R A
Sbjct: 488 LALAALAAAPAGPRLALVAAVLVLVASALRSA 519
>gi|5174671 chemokine (C-C motif) ligand 26 precursor [Homo sapiens]
Length = 94
Score = 30.8 bits (68), Expect = 0.25
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 69 CAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGK 105
C+Q VI T K G+K C +P V+K I +LK K
Sbjct: 57 CSQRAVIFTTKRGKKVCTHPRKKWVQKYI-SLLKTPK 92
>gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Homo
sapiens]
Length = 93
Score = 30.8 bits (68), Expect = 0.25
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 21 LLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIATLKN 80
+LL +A + APLA + C + + C++ VI K
Sbjct: 10 VLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKR 69
Query: 81 GQKACLNPASPMVKKIIEKM 100
G++ C +P+ V+K + +
Sbjct: 70 GRQVCADPSEEWVQKYVSDL 89
>gi|4506831 small inducible cytokine A18 precursor [Homo sapiens]
Length = 89
Score = 30.8 bits (68), Expect = 0.25
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 18 VALLLLLLVAASRRAAGAPLATELRCQCL-QTLQGIHLKNIQSVKVKSPGPHCAQTEVIA 76
+A LL+LV + A + T CL T I K I V P C + VI
Sbjct: 4 LAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFI--VDYSETSPQCPKPGVIL 61
Query: 77 TLKNGQKACLNPASPMVKKIIEKMLKN 103
K G++ C +P V+K I + N
Sbjct: 62 LTKRGRQICADPNKKWVQKYISDLKLN 88
>gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Homo
sapiens]
Length = 93
Score = 30.8 bits (68), Expect = 0.25
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 21 LLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIATLKN 80
+LL +A + APLA + C + + C++ VI K
Sbjct: 10 VLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKR 69
Query: 81 GQKACLNPASPMVKKIIEKM 100
G++ C +P+ V+K + +
Sbjct: 70 GRQVCADPSEEWVQKYVSDL 89
>gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Homo
sapiens]
Length = 92
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 18 VALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIAT 77
V LL+L+ A A AP+ ++ C + L V C+Q V+
Sbjct: 7 VLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQ 66
Query: 78 LKNGQKACLNPASPMVKKII 97
K G++ C +P+ V++ +
Sbjct: 67 TKRGKQVCADPSESWVQEYV 86
>gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Homo
sapiens]
Length = 92
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 18 VALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIAT 77
V LL+L+ A A AP+ ++ C + L V C+Q V+
Sbjct: 7 VLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQ 66
Query: 78 LKNGQKACLNPASPMVKKII 97
K G++ C +P+ V++ +
Sbjct: 67 TKRGKQVCADPSESWVQEYV 86
>gi|14589961 chemokine (C-C motif) ligand 14 isoform 1 precursor
[Homo sapiens]
Length = 93
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/86 (17%), Positives = 32/86 (37%)
Query: 18 VALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIAT 77
+ LL+ +A + + +C T + + + C++ ++
Sbjct: 8 IPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFI 67
Query: 78 LKNGQKACLNPASPMVKKIIEKMLKN 103
K G C NP+ V+ I+ M +N
Sbjct: 68 TKRGHSVCTNPSDKWVQDYIKDMKEN 93
>gi|4759226 transforming growth factor, beta receptor I isoform 1
precursor [Homo sapiens]
Length = 503
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 8 AAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQC 45
AAP PRLL LL+L AA+ AA P AT L+C C
Sbjct: 6 AAP-RPRLL----LLVLAAAAAAAAALLPGATALQCFC 38
>gi|195963412 transforming growth factor, beta receptor I isoform
2 precursor [Homo sapiens]
Length = 426
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 8 AAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQC 45
AAP PRLL LL+L AA+ AA P AT L+C C
Sbjct: 6 AAP-RPRLL----LLVLAAAAAAAAALLPGATALQCFC 38
>gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo
sapiens]
Length = 400
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 10 PSNPRLLR-VALLLLLLVAASRR--AAGAPLATELRC--QCLQ 47
P NPR L V L+LLLL+ S AAG PL TE R CLQ
Sbjct: 4 PLNPRPLPPVVLMLLLLLPPSPLPLAAGDPLPTESRLMNSCLQ 46
>gi|14589959 chemokine (C-C motif) ligand 14 isoform 2 precursor
[Homo sapiens]
Length = 109
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 13 PRLLRVALLLLLLVAASRRAAGAPLATELRC----------QCLQTLQGIHLKNIQSVKV 62
P L + + L +S + G P +++ +C T + + +
Sbjct: 9 PFFLLITIALGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDY 68
Query: 63 KSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKN 103
C++ ++ K G C NP+ V+ I+ M +N
Sbjct: 69 YETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 109
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,001,512
Number of Sequences: 37866
Number of extensions: 148925
Number of successful extensions: 461
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 41
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.