Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C9 Sequence: fasta or formatted (559aa) NCBI GI: 4502511
Description:

complement component 9 precursor

Referenced in:

Complement
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         29           2
 C cysteine            4.7         26           2
 D aspartate           6.3         35           2
 E glutamate           8.6         48           2
 F phenylalanine       5.0         28           1
 G glycine             6.4         36           2
 H histidine           1.6          9           1
 I isoleucine          5.9         33           2
 K lysine              6.6         37           2
 L leucine             7.5         42           2
 M methionine          1.8         10           1
 N asparagine          4.8         27           1
 P proline             3.4         19           2
 Q glutamine           2.5         14           1
 R arginine            5.9         33           2
 S serine              8.6         48           3
 T threonine           5.7         32           3
 V valine              5.0         28           2
 W tryptophan          0.7          4           1
 Y tyrosine            3.8         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   complement component 9 precursor 
C8A                   0.210   complement component 8, alpha polypeptide precursor [...
C6                    0.178   complement component 6 precursor 
C6                    0.178   complement component 6 precursor 
C8B                   0.175   complement component 8, beta polypeptide preproprotei...
C7                    0.170   complement component 7 precursor 
LRP4                  0.031   low density lipoprotein receptor-related protein 4 ...
LRP1B                 0.028   low density lipoprotein-related protein 1B precursor...
LRP1                  0.027   low density lipoprotein-related protein 1 
VLDLR                 0.026   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.026   very low density lipoprotein receptor isoform a [Hom...
SORL1                 0.024   sortilin-related receptor containing LDLR class A rep...
CORIN                 0.024   corin 
LRP6                  0.024   low density lipoprotein receptor-related protein 6 ...
LRP2                  0.024   low density lipoprotein-related protein 2 
LRP5                  0.023   low density lipoprotein receptor-related protein 5 ...
ST14                  0.023   matriptase 
LRP8                  0.022   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.022   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.022   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.022   low density lipoprotein receptor-related protein 8 i...
HSPG2                 0.021   heparan sulfate proteoglycan 2 
LRP12                 0.020   low density lipoprotein-related protein 12 isoform ...
LRP12                 0.020   low density lipoprotein-related protein 12 isoform a ...
LDLRAD3               0.018   low density lipoprotein receptor class A domain cont...
LDLR                  0.018   low density lipoprotein receptor precursor 
LRP10                 0.018   low density lipoprotein receptor-related protein 10 ...
TMPRSS7               0.017   transmembrane protease, serine 7 
PRF1                  0.015   perforin 1 precursor 
PRF1                  0.015   perforin 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press