Guide to the Human Genome
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Name: C6 Sequence: fasta or formatted (934aa) NCBI GI: 189242612
Description:

complement component 6 precursor

Referenced in:

Complement
Additional Genes in Development

Other entries for this name:
alt mRNA [934aa] complement component 6 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         41           2
 C cysteine            6.9         64           1
 D aspartate           4.8         45           2
 E glutamate           7.9         74           3
 F phenylalanine       4.2         39           1
 G glycine             7.1         66           2
 H histidine           2.0         19           2
 I isoleucine          4.2         39           1
 K lysine              7.1         66           2
 L leucine             7.3         68           2
 M methionine          0.9          8           1
 N asparagine          5.4         50           2
 P proline             4.6         43           2
 Q glutamine           4.9         46           2
 R arginine            5.0         47           2
 S serine              8.9         83           2
 T threonine           5.7         53           2
 V valine              4.6         43           2
 W tryptophan          1.4         13           1
 Y tyrosine            2.9         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   complement component 6 precursor 
C6                    1.000   complement component 6 precursor 
C7                    0.220   complement component 7 precursor 
C8A                   0.144   complement component 8, alpha polypeptide precursor [...
C8B                   0.134   complement component 8, beta polypeptide preproprotei...
C9                    0.102   complement component 9 precursor 
PRF1                  0.032   perforin 1 precursor 
PRF1                  0.032   perforin 1 precursor 
SVEP1                 0.021   polydom 
CR1                   0.021   complement receptor 1 isoform S precursor 
CR1                   0.021   complement receptor 1 isoform F precursor 
UNC5D                 0.020   unc-5 homolog D 
BAI3                  0.020   brain-specific angiogenesis inhibitor 3 
SEMA5A                0.019   semaphorin 5A 
CR2                   0.019   complement component (3d/Epstein Barr virus) recepto...
CR2                   0.019   complement component (3d/Epstein Barr virus) recepto...
HMCN1                 0.019   hemicentin 1 
THBS2                 0.019   thrombospondin 2 precursor 
THSD7A                0.019   thrombospondin, type I, domain containing 7A 
UNC5C                 0.018   unc5C 
C4BPA                 0.018   complement component 4 binding protein, alpha chain p...
BAI1                  0.018   brain-specific angiogenesis inhibitor 1 precursor [...
ADAMTS5               0.017   ADAM metallopeptidase with thrombospondin type 1 mo...
SSPO                  0.017   SCO-spondin 
ADAMTS10              0.017   ADAM metallopeptidase with thrombospondin type 1 mot...
UNC5A                 0.017   netrin receptor Unc5h1 
SPON1                 0.017   spondin 1, extracellular matrix protein 
ADAMTS3               0.017   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS9               0.017   ADAM metallopeptidase with thrombospondin type 1 mot...
F13B                  0.017   coagulation factor XIII B subunit precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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