Guide to the Human Genome
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Name: HMMR Sequence: fasta or formatted (724aa) NCBI GI: 217416394
Description:

hyaluronan-mediated motility receptor isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {725aa} hyaluronan-mediated motility receptor isoform a
alt prot {638aa} hyaluronan-mediated motility receptor isoform d
alt prot {709aa} hyaluronan-mediated motility receptor isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         43           2
 C cysteine            1.0          7           1
 D aspartate           4.0         29           1
 E glutamate          15.2        110           3
 F phenylalanine       2.2         16           1
 G glycine             2.2         16           1
 H histidine           1.5         11           2
 I isoleucine          3.5         25           1
 K lysine             13.5         98           3
 L leucine            13.8        100           3
 M methionine          1.8         13           2
 N asparagine          5.2         38           2
 P proline             1.5         11           1
 Q glutamine           8.8         64           2
 R arginine            3.7         27           2
 S serine              7.0         51           3
 T threonine           3.9         28           2
 V valine              3.5         25           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hyaluronan-mediated motility receptor isoform b [Ho... 
HMMR                  0.996   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.971   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.871   hyaluronan-mediated motility receptor isoform d [Ho...
KIF15                 0.080   kinesin family member 15 
GOLGA4                0.074   golgi autoantigen, golgin subfamily a, 4 
NUMA1                 0.073   nuclear mitotic apparatus protein 1 
MYH10                 0.073   myosin, heavy polypeptide 10, non-muscle 
GCC2                  0.072   GRIP and coiled-coil domain-containing 2 
MYH4                  0.072   myosin, heavy polypeptide 4, skeletal muscle 
MYH6                  0.071   myosin heavy chain 6 
MYH9                  0.070   myosin, heavy polypeptide 9, non-muscle 
MYH3                  0.069   myosin, heavy chain 3, skeletal muscle, embryonic [H...
GOLGB1                0.068   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH1                  0.068   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH7                  0.068   myosin, heavy chain 7, cardiac muscle, beta 
CLIP1                 0.068   restin isoform b 
CLIP1                 0.068   restin isoform a 
CCDC88A               0.067   coiled-coil domain containing 88A isoform 1 
MYH2                  0.067   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.067   myosin, heavy chain 2, skeletal muscle, adult [Homo...
ROCK1                 0.066   Rho-associated, coiled-coil containing protein kinase...
CEP250                0.066   centrosomal protein 2 
CCDC88A               0.066   coiled-coil domain containing 88A isoform 2 
MYH13                 0.065   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CROCC                 0.065   ciliary rootlet coiled-coil 
CIT                   0.065   citron 
CGNL1                 0.065   cingulin-like 1 
ERC2                  0.064   cytomatrix protein p110 
MYH11                 0.063   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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