Guide to the Human Genome
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Name: DEF6 Sequence: fasta or formatted (631aa) NCBI GI: 145312241
Description:

differentially expressed in FDCP 6 homolog

Referenced in:

Inositol Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         46           2
 C cysteine            1.6         10           2
 D aspartate           4.3         27           4
 E glutamate          13.0         82           5
 F phenylalanine       2.2         14           1
 G glycine             3.8         24           2
 H histidine           2.1         13           1
 I isoleucine          2.2         14           2
 K lysine              6.3         40           2
 L leucine            12.0         76           2
 M methionine          2.5         16           1
 N asparagine          3.0         19           1
 P proline             3.3         21           2
 Q glutamine          10.1         64           3
 R arginine            9.0         57           3
 S serine              6.3         40           3
 T threonine           2.9         18           2
 V valine              4.3         27           1
 W tryptophan          1.6         10           1
 Y tyrosine            2.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   differentially expressed in FDCP 6 homolog 
SWAP70                0.395   SWAP-70 protein 
TCHH                  0.068   trichohyalin 
LOC645202             0.059   PREDICTED: hypothetical protein LOC645202 
INCENP                0.058   inner centromere protein antigens 135/155kDa isofor...
ZNF853                0.058   zinc finger protein 853 
LOC440243             0.058   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283767             0.057   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.056   golgi autoantigen, golgin subfamily a-like 
INCENP                0.055   inner centromere protein antigens 135/155kDa isofor...
PLEC1                 0.055   plectin 1 isoform 11 
PLEC1                 0.055   plectin 1 isoform 10 
PLEC1                 0.055   plectin 1 isoform 8 
PLEC1                 0.055   plectin 1 isoform 7 
PLEC1                 0.055   plectin 1 isoform 6 
PLEC1                 0.055   plectin 1 isoform 3 
PLEC1                 0.055   plectin 1 isoform 2 
PLEC1                 0.055   plectin 1 isoform 1 
GIGYF2                0.055   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.055   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.055   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.055   GRB10 interacting GYF protein 2 isoform b 
LOC400352             0.055   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.055   PREDICTED: similar to Putative golgin subfamily A m...
LOC283685             0.054   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133220          0.054   PREDICTED: hypothetical protein 
LOC283685             0.054   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133758          0.053   PREDICTED: hypothetical protein, partial 
MAP4K4                0.050   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.049   mitogen-activated protein kinase kinase kinase kinas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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