Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TPM2 Sequence: fasta or formatted (284aa) NCBI GI: 42476296
Description:

tropomyosin 2 (beta) isoform 1

Referenced in:

Muscle

Other entries for this name:
alt prot [231aa] tropomyosin 2 (beta) isoform 3
alt prot [284aa] tropomyosin 2 (beta) isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         34           2
 C cysteine            0.7          2           1
 D aspartate           7.4         21           2
 E glutamate          21.1         60           3
 F phenylalanine       0.4          1           1
 G glycine             1.4          4           1
 H histidine           0.4          1           1
 I isoleucine          3.9         11           1
 K lysine             13.7         39           3
 L leucine            10.2         29           2
 M methionine          2.8          8           1
 N asparagine          2.5          7           2
 P proline             0.0          0           0
 Q glutamine           5.6         16           2
 R arginine            4.9         14           2
 S serine              4.2         12           1
 T threonine           2.8          8           1
 V valine              3.9         11           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tropomyosin 2 (beta) isoform 1 
TPM3                  0.882   tropomyosin 3 isoform 1 
TPM1                  0.875   tropomyosin 1 alpha chain isoform 1 
TPM2                  0.855   tropomyosin 2 (beta) isoform 2 
TPM1                  0.831   tropomyosin 1 alpha chain isoform 5 
TPM4                  0.822   tropomyosin 4 isoform 1 
TPM1                  0.802   tropomyosin 1 alpha chain isoform 3 
TPM1                  0.759   tropomyosin 1 alpha chain isoform 4 
TPM1                  0.729   tropomyosin 1 alpha chain isoform 2 
TPM1                  0.686   tropomyosin 1 alpha chain isoform 7 
TPM3                  0.602   tropomyosin 3 isoform 5 
TPM4                  0.598   tropomyosin 4 isoform 2 
TPM3                  0.594   tropomyosin 3 isoform 4 
TPM1                  0.592   tropomyosin 1 alpha chain isoform 6 
TPM3                  0.565   tropomyosin 3 isoform 3 
TPM3                  0.559   tropomyosin 3 isoform 2 
TPM2                  0.492   tropomyosin 2 (beta) isoform 3 
LOC645202             0.125   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.124   PREDICTED: Putative golgin subfamily A member 6-lik...
MYH9                  0.114   myosin, heavy polypeptide 9, non-muscle 
LOC400352             0.114   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.114   PREDICTED: similar to Putative golgin subfamily A m...
LOC727832             0.110   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.108   golgi autoantigen, golgin subfamily a-like 
CCDC18                0.108   sarcoma antigen NY-SAR-41 
WDR87                 0.108   NYD-SP11 protein 
LOC283685             0.106   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.106   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133220          0.106   PREDICTED: hypothetical protein 
MYH10                 0.104   myosin, heavy polypeptide 10, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press